Gene list
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COG category: Translation, ribosomal structure and biogenesis
Organism: Pseudomonas syringae pv. tomato str. DC3000, DC3000
Number of genes found: 199
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| Pseudomonas syringae pv. tomato str. DC3000, DC3000 | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | PSPTO0706 | lipopolysaccharide biosynthesis protein, putative | SubName: Full=Lipopolysaccharide biosynthesis protein, putative; | chromosome | CDS | 759038 | 762 | + | 0.547244 |
| NA | PSPTO3006 | deaminase AmnE, putative | SubName: Full=Deaminase AmnE, putative; | chromosome | CDS | 3380581 | 435 | - | 0.641379 |
| NA | PSPTO4134 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4660133 | 1047 | + | 0.627507 |
| NA | PSPTO4019 | conserved hypothetical protein TIGR01125 | RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; EC=2.-.-.-; AltName: Full=Ribosome maturation factor RimO; | chromosome | CDS | 4530408 | 1332 | + | 0.602853 |
| NA | PSPTO4778 | endoribonuclease L-PSP family protein | SubName: Full=Endoribonuclease L-PSP family protein; | chromosome | CDS | 5419226 | 384 | - | 0.622396 |
| NA | PSPTO2569 | amidase family protein | SubName: Full=Amidase family protein; | chromosome | CDS | 2836915 | 1524 | - | 0.635171 |
| NA | PSPTO4526 | 6-aminohexanoate-cyclic-dimer hydrolase, putative | SubName: Full=6-aminohexanoate-cyclic-dimer hydrolase, putative; | chromosome | CDS | 5111194 | 1446 | - | 0.65491 |
| NA | PSPTO4012 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4524602 | 762 | - | 0.585302 |
| NA | PSPTO2675 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2970772 | 591 | - | 0.57868 |
| NA | PSPTO3115 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3501750 | 459 | - | 0.553377 |
| NA | PSPTO5559 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 6333723 | 975 | + | 0.598974 |
| NA | PSPTO1103 | ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 | RecName: Full=50S ribosomal protein L25; AltName: Full=General stress protein CTC; | chromosome | CDS | 1217760 | 612 | - | 0.568627 |
| NA | PSPTO0201 | conserved domain protein | SubName: Full=Conserved domain protein; | chromosome | CDS | 224484 | 900 | - | 0.402222 |
| NA | PSPTO2205 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2429130 | 582 | - | 0.608247 |
| NA | PSPTO3641 | endoribonuclease L-PSP family protein | SubName: Full=Endoribonuclease L-PSP family protein; | chromosome | CDS | 4100364 | 393 | + | 0.631043 |
| NA | PSPTO1753 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1924100 | 1443 | + | 0.589051 |
| NA | PSPTO2477 | endoribonuclease L-PSP family protein | SubName: Full=Endoribonuclease L-PSP family protein; | chromosome | CDS | 2735702 | 399 | - | 0.611529 |
| NA | PSPTO5387 | stability cassette protein, putative | SubName: Full=Stability cassette protein, putative; | chromosome | CDS | 6119030 | 291 | - | 0.525773 |
| NA | PSPTO5120 | amidase family protein | SubName: Full=Amidase family protein; | chromosome | CDS | 5824060 | 1560 | - | 0.572436 |
| NA | PSPTO5070 | ATP-dependent RNA helicase rhlE, putative | RecName: Full=ATP-dependent RNA helicase RhlE; EC=3.6.4.13; | chromosome | CDS | 5774194 | 1890 | + | 0.630688 |
| NA | PSPTO4021 | S4 domain protein | SubName: Full=S4 domain protein; | chromosome | CDS | 4532376 | 711 | + | 0.589311 |
| NA | PSPTO1693 | RNA methyltransferase, TrmA family | RecName: Full=23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD; EC=2.1.1.190; AltName: Full=23S rRNA(m5U1939)-methyltransferase; | chromosome | CDS | 1862367 | 1356 | + | 0.60767 |
| NA | PSPTO4096 | conserved domain protein | SubName: Full=Conserved domain protein; | chromosome | CDS | 4616010 | 141 | + | 0.560284 |
| NA | PSPTO5507 | acetyltransferase, GNAT family | SubName: Full=Acetyltransferase, GNAT family; | chromosome | CDS | 6272897 | 669 | + | 0.573991 |
| NA | PSPTO1845 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2015294 | 492 | - | 0.603659 |
| NA | PSPTO2964 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3333375 | 1485 | - | 0.63165 |
| NA | PSPTO1011 | acetyltransferase, GNAT family | SubName: Full=Acetyltransferase, GNAT family; | chromosome | CDS | 1105251 | 564 | - | 0.601064 |
| NA | PSPTO3192 | amidase family protein | SubName: Full=Amidase family protein; | chromosome | CDS | 3582812 | 1428 | - | 0.632353 |
| NA | PSPTO0072 | endoribonuclease L-PSP, putative | SubName: Full=Endoribonuclease L-PSP, putative; | chromosome | CDS | 94399 | 381 | - | 0.572178 |
| NA | PSPTO5384 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 6117371 | 342 | - | 0.526316 |
| NA | PSPTO1361 | amidase family protein | SubName: Full=Amidase family protein; | chromosome | CDS | 1498345 | 1806 | - | 0.631783 |
| NA | PSPTO1420 | RNA methyltransferase, TrmH family, group 1 | SubName: Full=RNA methyltransferase, TrmH family, group 1; | chromosome | CDS | 1560768 | 774 | + | 0.621447 |
| NA | PSPTO4934 | RNA methyltransferase, TrmH family, group 3 | RecName: Full=23S rRNA (guanosine-2-O-)-methyltransferase RlmB; EC=2.1.1.185; AltName: Full=23S rRNA (guanosine2251 2-O)-methyltransferase; AltName: Full=23S rRNA Gm2251 2-O-methyltransferase; | chromosome | CDS | 5589356 | 753 | - | 0.626826 |
| NA | PSPTO1811 | Sua5/YciO/YrdC/YwlC family protein | SubName: Full=Sua5/YciO/YrdC/YwlC family protein; | chromosome | CDS | 1980240 | 630 | + | 0.625397 |
| NA | PSPTO0174 | SUA5/yciO/yrdC family domain protein | RecName: Full=Threonylcarbamoyl-AMP synthase; Short=TC-AMP synthase; EC=2.7.7.87; AltName: Full=L-threonylcarbamoyladenylate synthase; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaC; AltName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein TsaC; | chromosome | CDS | 195488 | 558 | - | 0.634409 |
| NA | PSPTO3779 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4281838 | 1356 | - | 0.606932 |
| NA | PSPTO1457 | cytidine/deoxycytidylate deaminase family protein | RecName: Full=tRNA-specific adenosine deaminase; EC=3.5.4.33; | chromosome | CDS | 1602041 | 510 | + | 0.639216 |
| NA | PSPTO0102 | endoribonuclease L-PSP family protein | SubName: Full=Endoribonuclease L-PSP family protein; | chromosome | CDS | 122249 | 354 | + | 0.590395 |
| NA | PSPTO0967 | glutamyl-tRNA synthetase-related protein | RecName: Full=Glutamyl-Q tRNA(Asp) synthetase; Short=Glu-Q-RSs; EC=6.1.1.-; | chromosome | CDS | 1051822 | 888 | - | 0.617117 |
| NA | PSPTO2040 | modification methylase, HemK family | RecName: Full=50S ribosomal protein L3 glutamine methyltransferase; Short=L3 MTase; EC=2.1.1.298; AltName: Full=N5-glutamine methyltransferase PrmB; | chromosome | CDS | 2223115 | 909 | + | 0.605061 |
| NA | PSPTO4498 | FtsJ cell division protein | RecName: Full=Ribosomal RNA large subunit methyltransferase E; EC=2.1.1.166; AltName: Full=23S rRNA Um2552 methyltransferase; AltName: Full=rRNA (uridine-2-O-)-methyltransferase; | chromosome | CDS | 5067120 | 651 | - | 0.55914 |
| NA | PSPTO4664 | ATP-dependent RNA helicase rhlE, putative | SubName: Full=ATP-dependent RNA helicase rhlE, putative; | chromosome | CDS | 5267751 | 1329 | - | 0.610986 |
| NA | PSPTO2083 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2255556 | 528 | - | 0.473485 |
| NA | PSPTO2779 | endoribonuclease L-PSP family protein | SubName: Full=Endoribonuclease L-PSP family protein; | chromosome | CDS | 3097484 | 387 | + | 0.596899 |
| NA | PSPTO1744 | initiation factor 2 subunit family | RecName: Full=Methylthioribose-1-phosphate isomerase; Short=M1Pi; Short=MTR-1-P isomerase; EC=5.3.1.23; AltName: Full=S-methyl-5-thioribose-1-phosphate isomerase; | chromosome | CDS | 1912105 | 1077 | + | 0.640669 |
| NA | PSPTO5323 | RNA methyltransferase, TrmH family, group 2 | RecName: Full=tRNA (cytidine(34)-2-O)-methyltransferase; EC=2.1.1.207; AltName: Full=tRNA (cytidine/uridine-2-O-)-methyltransferase TrmL; | chromosome | CDS | 6052188 | 456 | + | 0.609649 |
| NA | PSPTO2126 | TIM-barrel protein, yjbN family | RecName: Full=tRNA-dihydrouridine synthase A; EC=1.-.-.-; | chromosome | CDS | 2299104 | 1011 | + | 0.602374 |
| NA | PSPTO4841 | translation initiation factor SUI1, putative | SubName: Full=Translation initiation factor SUI1, putative; | chromosome | CDS | 5480837 | 372 | + | 0.61828 |
| NA | PSPTO3916 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4431331 | 498 | + | 0.604418 |
| NA | PSPTO4244 | amidase family protein | SubName: Full=Amidase family protein; | chromosome | CDS | 4779401 | 1815 | + | 0.640771 |
| NA | PSPTO4645 | methyltransferase, putative | RecName: Full=Ribosomal RNA large subunit methyltransferase G; EC=2.1.1.174; AltName: Full=23S rRNA m2G1835 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase RlmG; | chromosome | CDS | 5248092 | 1125 | + | 0.633778 |
| NA | PSPTO4499 | conserved hypothetical protein TIGR00253 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 5067874 | 312 | + | 0.522436 |
| NA | PSPTO4903 | osmotically-inducible lipoprotein OsmE, putative | SubName: Full=Osmotically-inducible lipoprotein OsmE, putative; | chromosome | CDS | 5552577 | 339 | + | 0.539823 |
| NA | PSPTO3750 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4237660 | 624 | - | 0.586538 |
| NA | PSPTO0668 | conserved domain protein | SubName: Full=Conserved domain protein; | chromosome | CDS | 721761 | 669 | - | 0.54858 |
| NA | PSPTO2169 | dihydrouridine synthase family protein | RecName: Full=tRNA-dihydrouridine synthase C; EC=1.-.-.-; | chromosome | CDS | 2387868 | 954 | + | 0.624738 |
| NA | PSPTO4864 | TIM-barrel protein, putative, NifR3 family | RecName: Full=tRNA-dihydrouridine synthase B; EC=1.-.-.-; | chromosome | CDS | 5509603 | 1014 | + | 0.601578 |
| NA | PSPTO3841 | ribonuclease, Rne/Rng family protein | RecName: Full=Ribonuclease E; Short=RNase E; EC=3.1.26.12; | chromosome | CDS | 4347221 | 3387 | + | 0.618541 |
| NA | PSPTO4204 | amidase family protein | SubName: Full=Amidase family protein; | chromosome | CDS | 4735471 | 1329 | - | 0.659895 |
| NA | PSPTO0280 | methionine aminopeptidase, putative | SubName: Full=Methionine aminopeptidase, putative; | chromosome | CDS | 305562 | 705 | - | 0.563121 |
| NA | PSPTO1818 | peptidyl-tRNA hydrolase domain protein | SubName: Full=Peptidyl-tRNA hydrolase domain protein; | chromosome | CDS | 1985964 | 414 | + | 0.596618 |
| NA | PSPTO4661 | acetyltransferase, GNAT family | SubName: Full=Acetyltransferase, GNAT family; | chromosome | CDS | 5264717 | 570 | - | 0.621053 |
| NA | PSPTO0556 | nucleotidyltransferase family protein | SubName: Full=Nucleotidyltransferase family protein; | chromosome | CDS | 611814 | 633 | + | 0.627172 |
| NA | PSPTO1155 | endoribonuclease L-PSP family protein | RecName: Full=Putative aminoacrylate peracid reductase RutC; EC=1.-.-.-; | chromosome | CDS | 1269120 | 384 | - | 0.591146 |
| NA | PSPTO1775 | ATP-dependent RNA helicase, DEAD box family | RecName: Full=ATP-dependent RNA helicase DeaD; EC=3.6.4.13; AltName: Full=Cold-shock DEAD box protein A; | chromosome | CDS | 1943997 | 1689 | + | 0.616933 |
| NA | PSPTO2611 | tRNA synthetase class II family protein | SubName: Full=tRNA synthetase class II family protein; | chromosome | CDS | 2902216 | 582 | - | 0.582474 |
| alaS | PSPTO1842 | alanyl-tRNA synthetase | RecName: Full=Alanine--tRNA ligase; EC=6.1.1.7; AltName: Full=Alanyl-tRNA synthetase; Short=AlaRS; | chromosome | CDS | 2010440 | 2625 | + | 0.593524 |
| amdA | PSPTO2421 | amidase | SubName: Full=Amidase; | chromosome | CDS | 2669857 | 1536 | + | 0.629557 |
| ansA | PSPTO5501 | L-asparaginase I | SubName: Full=L-asparaginase I; | chromosome | CDS | 6266793 | 1005 | + | 0.642786 |
| argS | PSPTO5138 | arginyl-tRNA synthetase | RecName: Full=Arginine--tRNA ligase; EC=6.1.1.19; AltName: Full=Arginyl-tRNA synthetase; Short=ArgRS; | chromosome | CDS | 5848467 | 1737 | + | 0.603339 |
| aspS | PSPTO3981 | aspartyl-tRNA synthetase | RecName: Full=Aspartate--tRNA(Asp/Asn) ligase; EC=6.1.1.23; AltName: Full=Aspartyl-tRNA synthetase; Short=AspRS; AltName: Full=Non-discriminating aspartyl-tRNA synthetase; Short=ND-AspRS; | chromosome | CDS | 4486896 | 1776 | - | 0.594032 |
| avrPto1 | PSPTO4001 | type III effector protein AvrPto1 | SubName: Full=Type III effector protein AvrPto1; | chromosome | CDS | 4514766 | 495 | - | 0.494949 |
| cafA | PSPTO4468 | ribonuclease G | SubName: Full=Ribonuclease G; | chromosome | CDS | 5032433 | 1458 | - | 0.581619 |
| cca | PSPTO0544 | tRNA nucleotidyltransferase | RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; EC=2.7.7.72; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2-nucleotidase; EC=3.1.3.-; Includes: RecName: Full=2,3-cyclic phosphodiesterase; EC=3.1.4.-; Includes: RecName: Full=Phosphatase; EC=3.1.3.-; | chromosome | CDS | 596465 | 1230 | - | 0.622764 |
| cdd | PSPTO1602 | cytosine deaminase | SubName: Full=Cytosine deaminase; | chromosome | CDS | 1758068 | 438 | + | 0.577626 |
| cysS | PSPTO3742 | cysteinyl-tRNA synthetase | RecName: Full=Cysteine--tRNA ligase; EC=6.1.1.16; AltName: Full=Cysteinyl-tRNA synthetase; Short=CysRS; | chromosome | CDS | 4227791 | 1383 | - | 0.607375 |
| dbpA | PSPTO5007 | ATP-independent RNA helicase DbpA | SubName: Full=ATP-independent RNA helicase DbpA; | chromosome | CDS | 5691491 | 1380 | + | 0.608696 |
| def-1 | PSPTO0177 | polypeptide deformylase | RecName: Full=Peptide deformylase 1; Short=PDF 1; EC=3.5.1.88; AltName: Full=Polypeptide deformylase 1; | chromosome | CDS | 198474 | 507 | + | 0.564103 |
| def-2 | PSPTO1598 | polypeptide deformylase | RecName: Full=Peptide deformylase 2; Short=PDF 2; EC=3.5.1.88; AltName: Full=Polypeptide deformylase 2; | chromosome | CDS | 1755282 | 540 | + | 0.57037 |
| dtd | PSPTO5163 | D-tyrosyl-tRNA(Tyr) deacylase | RecName: Full=D-tyrosyl-tRNA(Tyr) deacylase; EC=3.1.-.-; | chromosome | CDS | 5876289 | 438 | - | 0.563927 |
| efp | PSPTO1765 | translation elongation factor P | RecName: Full=Elongation factor P; Short=EF-P; | chromosome | CDS | 1936301 | 570 | + | 0.536842 |
| fmt | PSPTO0178 | methionyl-tRNA formyltransferase | RecName: Full=Methionyl-tRNA formyltransferase; EC=2.1.2.9; | chromosome | CDS | 199041 | 945 | + | 0.647619 |
| frr | PSPTO1537 | ribosome recycling factor | RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor; | chromosome | CDS | 1696300 | 558 | + | 0.580645 |
| fusA | PSPTO0623 | translation elongation factor G | RecName: Full=Elongation factor G; Short=EF-G; | chromosome | CDS | 688019 | 2106 | + | 0.542735 |
| gatA | PSPTO4474 | glutamyl-tRNA(Gln) amidotransferase, A subunit | RecName: Full=Glutamyl-tRNA(Gln) amidotransferase subunit A; Short=Glu-ADT subunit A; EC=6.3.5.7; | chromosome | CDS | 5037897 | 1452 | + | 0.626033 |
| gatB | PSPTO4475 | glutamyl-tRNA(Gln) amidotransferase, B subunit | RecName: Full=Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Short=Asp/Glu-ADT subunit B; EC=6.3.5.-; | chromosome | CDS | 5039359 | 1446 | + | 0.589212 |
| gatC | PSPTO4473 | glutamyl-tRNA(Gln) amidotransferase, C subunit | RecName: Full=Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; Short=Asp/Glu-ADT subunit C; EC=6.3.5.-; | chromosome | CDS | 5037595 | 288 | + | 0.579861 |
| glnS | PSPTO3743 | glutaminyl-tRNA synthetase | RecName: Full=Glutamine--tRNA ligase; EC=6.1.1.18; AltName: Full=Glutaminyl-tRNA synthetase; Short=GlnRS; | chromosome | CDS | 4229193 | 1710 | - | 0.595906 |
| gltX | PSPTO2166 | glutamyl-tRNA synthetase | RecName: Full=Glutamate--tRNA ligase; EC=6.1.1.17; AltName: Full=Glutamyl-tRNA synthetase; Short=GluRS; | chromosome | CDS | 2383120 | 1482 | + | 0.60054 |
| glyQ | PSPTO0184 | glycyl-tRNA synthetase, alpha subunit | RecName: Full=Glycine--tRNA ligase alpha subunit; EC=6.1.1.14; AltName: Full=Glycyl-tRNA synthetase alpha subunit; Short=GlyRS; | chromosome | CDS | 206834 | 948 | + | 0.610759 |
| glyS | PSPTO0185 | glycyl-tRNA synthetase, beta subunit | RecName: Full=Glycine--tRNA ligase beta subunit; EC=6.1.1.14; AltName: Full=Glycyl-tRNA synthetase beta subunit; Short=GlyRS; | chromosome | CDS | 207778 | 2055 | + | 0.618005 |
| gshB | PSPTO5035 | glutathione synthetase | RecName: Full=Glutathione synthetase; EC=6.3.2.3; AltName: Full=GSH synthetase; Short=GSH-S; Short=GSHase; AltName: Full=Glutathione synthase; | chromosome | CDS | 5736905 | 960 | + | 0.622917 |
| hemK | PSPTO1110 | hemK protein | RecName: Full=Release factor glutamine methyltransferase; Short=RF MTase; EC=2.1.1.297; AltName: Full=N5-glutamine methyltransferase PrmC; AltName: Full=Protein-(glutamine-N5) MTase PrmC; AltName: Full=Protein-glutamine N-methyltransferase PrmC; | chromosome | CDS | 1225393 | 834 | + | 0.642686 |
| hisS | PSPTO1435 | histidyl-tRNA synthetase | RecName: Full=Histidine--tRNA ligase; EC=6.1.1.21; AltName: Full=Histidyl-tRNA synthetase; Short=HisRS; | chromosome | CDS | 1572682 | 1290 | + | 0.583721 |
| hopAB2 | PSPTO3087 | type III effector HopAB2 | RecName: Full=Effector protein HopAB2; AltName: Full=Avirulence protein AvrPtoB; Includes: RecName: Full=E3 ubiquitin-protein ligase; EC=6.3.2.-; | chromosome | CDS | 3468470 | 1662 | - | 0.591456 |
| hopC1 | PSPTO0589 | type III effector HopC1 | SubName: Full=Type III effector HopC1; | chromosome | CDS | 648896 | 810 | - | 0.469136 |
| hslR | PSPTO0237 | heat shock protein 15 | RecName: Full=Heat shock protein 15; | chromosome | CDS | 257588 | 408 | + | 0.598039 |
| ileS | PSPTO0806 | isoleucyl-tRNA synthetase | RecName: Full=Isoleucine--tRNA ligase; EC=6.1.1.5; AltName: Full=Isoleucyl-tRNA synthetase; Short=IleRS; | chromosome | CDS | 870407 | 2832 | + | 0.603814 |
| infA | PSPTO3352 | translation initiation factor IF-1 | RecName: Full=Translation initiation factor IF-1; | chromosome | CDS | 3788954 | 219 | + | 0.538813 |
| infB | PSPTO4490 | translation initiation factor IF-2 | RecName: Full=Translation initiation factor IF-2; | chromosome | CDS | 5056608 | 2526 | - | 0.593824 |
| infC | PSPTO2379 | translation initiation factor IF-3 | RecName: Full=Translation initiation factor IF-3; | chromosome | CDS | 2629307 | 534 | + | 0.518727 |
| kptA | PSPTO4788 | RNA 2'-phosphotransferase | RecName: Full=Probable RNA 2-phosphotransferase; EC=2.7.1.-; | chromosome | CDS | 5427872 | 564 | + | 0.578014 |
| ksgA | PSPTO0551 | dimethyladenosine transferase | RecName: Full=Ribosomal RNA small subunit methyltransferase A; EC=2.1.1.182; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N, N-adenosyl(rRNA) dimethyltransferase; | chromosome | CDS | 604665 | 807 | - | 0.60223 |
| leuS | PSPTO4812 | leucyl-tRNA synthetase | RecName: Full=Leucine--tRNA ligase; EC=6.1.1.4; AltName: Full=Leucyl-tRNA synthetase; Short=LeuRS; | chromosome | CDS | 5449874 | 2607 | + | 0.602992 |
| lysS | PSPTO1501 | lysyl-tRNA synthetase | RecName: Full=Lysine--tRNA ligase; EC=6.1.1.6; AltName: Full=Lysyl-tRNA synthetase; Short=LysRS; | chromosome | CDS | 1658196 | 1503 | + | 0.600133 |
| map-1 | PSPTO1533 | methionine aminopeptidase, type I | RecName: Full=Methionine aminopeptidase; Short=MAP; Short=MetAP; EC=3.4.11.18; AltName: Full=Peptidase M; | chromosome | CDS | 1692462 | 783 | - | 0.58493 |
| map-2 | PSPTO2362 | methionine aminopeptidase, type I | RecName: Full=Methionine aminopeptidase; Short=MAP; Short=MetAP; EC=3.4.11.18; AltName: Full=Peptidase M; | chromosome | CDS | 2615439 | 792 | + | 0.592172 |
| miaA | PSPTO4943 | tRNA delta(2)-isopentenylpyrophosphate transferase | RecName: Full=tRNA dimethylallyltransferase; EC=2.5.1.75; AltName: Full=Dimethylallyl diphosphate:tRNA dimethylallyltransferase; Short=DMAPP:tRNA dimethylallyltransferase; Short=DMATase; AltName: Full=Isopentenyl-diphosphate:tRNA isopentenyltransferase; Short=IPP transferase; Short=IPPT; Short=IPTase; | chromosome | CDS | 5602132 | 972 | - | 0.584362 |
| miaB | PSPTO4804 | tRNA-i(6)A37 modification enzyme MiaB | RecName: Full=tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; EC=2.8.4.3; AltName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase; | chromosome | CDS | 5442888 | 1329 | + | 0.600451 |
| omlA | PSPTO4509 | outer membrane lipoprotein OmlA | RecName: Full=Outer membrane protein assembly factor BamE; Flags: Precursor; | chromosome | CDS | 5080844 | 522 | + | 0.582375 |
| pcnB | PSPTO0963 | poly(A) polymerase | RecName: Full=Poly(A) polymerase I; Short=PAP I; EC=2.7.7.19; | chromosome | CDS | 1045046 | 1404 | - | 0.602564 |
| pheS | PSPTO2382 | phenylalanyl-tRNA synthetase, alpha subunit | RecName: Full=Phenylalanine--tRNA ligase alpha subunit; EC=6.1.1.20; AltName: Full=Phenylalanyl-tRNA synthetase alpha subunit; Short=PheRS; | chromosome | CDS | 2630585 | 1017 | + | 0.584071 |
| pnp | PSPTO4486 | polyribonucleotide nucleotidyltransferase | RecName: Full=Polyribonucleotide nucleotidyltransferase; EC=2.7.7.8; AltName: Full=Polynucleotide phosphorylase; Short=PNPase; | chromosome | CDS | 5052402 | 2106 | - | 0.582146 |
| prfA | PSPTO1109 | peptide chain release factor 1 | RecName: Full=Peptide chain release factor 1; Short=RF-1; | chromosome | CDS | 1224310 | 1083 | + | 0.594644 |
| prfC | PSPTO4579 | peptide chain release factor 3 | RecName: Full=Peptide chain release factor 3; Short=RF-3; | chromosome | CDS | 5175451 | 1584 | + | 0.600379 |
| prmA | PSPTO4862 | ribosomal protein L11 methyltransferase | RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11 Mtase; EC=2.1.1.-; | chromosome | CDS | 5507022 | 879 | + | 0.637088 |
| proS | PSPTO3988 | prolyl-tRNA synthetase | RecName: Full=Proline--tRNA ligase; EC=6.1.1.15; AltName: Full=Prolyl-tRNA synthetase; Short=ProRS; | chromosome | CDS | 4494353 | 1716 | + | 0.592075 |
| pth | PSPTO1102 | peptidyl-tRNA hydrolase | RecName: Full=Peptidyl-tRNA hydrolase; Short=PTH; EC=3.1.1.29; | chromosome | CDS | 1217011 | 585 | - | 0.603419 |
| queA | PSPTO1412 | S-adenosylmethionine:tRNAribosyltransferase-isom erase | RecName: Full=S-adenosylmethionine:tRNA ribosyltransferase-isomerase; EC=2.4.99.17; AltName: Full=Queuosine biosynthesis protein QueA; | chromosome | CDS | 1551979 | 1065 | + | 0.624413 |
| rbfA | PSPTO4489 | ribosome-binding factor A | RecName: Full=Ribosome-binding factor A; | chromosome | CDS | 5056032 | 417 | - | 0.58753 |
| rhlB | PSPTO1253 | ATP-dependent RNA helicase RhlB | RecName: Full=ATP-dependent RNA helicase RhlB; EC=3.6.4.13; | chromosome | CDS | 1375533 | 1194 | - | 0.608878 |
| rimK | PSPTO0234 | ribosomal protein S6 modification protein | RecName: Full=Probable alpha-L-glutamate ligase; EC=6.3.2.-; | chromosome | CDS | 255243 | 906 | - | 0.601545 |
| rimM | PSPTO1474 | 16S rRNA processing protein RimM | RecName: Full=Ribosome maturation factor RimM; | chromosome | CDS | 1619447 | 540 | + | 0.544444 |
| rmf | PSPTO2310 | ribosome modulation factor-related protein | RecName: Full=Ribosome modulation factor; Short=RMF; | chromosome | CDS | 2557345 | 216 | - | 0.537037 |
| rnd | PSPTO3922 | ribonuclease D | RecName: Full=Ribonuclease D; Short=RNase D; EC=3.1.13.5; | chromosome | CDS | 4434945 | 1134 | - | 0.61552 |
| rnpA | PSPTO5614 | ribonuclease P protein component | RecName: Full=Ribonuclease P protein component; Short=RNase P protein; Short=RNaseP protein; EC=3.1.26.5; AltName: Full=Protein C5; | chromosome | CDS | 6396329 | 402 | - | 0.537313 |
| rph | PSPTO0077 | ribonuclease PH | RecName: Full=Ribonuclease PH; Short=RNase PH; EC=2.7.7.56; AltName: Full=tRNA nucleotidyltransferase; | chromosome | CDS | 99223 | 723 | + | 0.611342 |
| rplA | PSPTO0616 | ribosomal protein L1 | RecName: Full=50S ribosomal protein L1; | chromosome | CDS | 676424 | 696 | + | 0.551724 |
| rplB | PSPTO0629 | ribosomal protein L2 | RecName: Full=50S ribosomal protein L2; | chromosome | CDS | 693445 | 825 | + | 0.556364 |
| rplC | PSPTO0626 | ribosomal protein L3 | RecName: Full=50S ribosomal protein L3; | chromosome | CDS | 691884 | 636 | + | 0.559748 |
| rplD | PSPTO0627 | ribosomal protein L4 | RecName: Full=50S ribosomal protein L4; | chromosome | CDS | 692532 | 603 | + | 0.542289 |
| rplE | PSPTO0638 | ribosomal protein L5 | RecName: Full=50S ribosomal protein L5; | chromosome | CDS | 697232 | 540 | + | 0.518519 |
| rplF | PSPTO0641 | ribosomal protein L6 | RecName: Full=50S ribosomal protein L6; | chromosome | CDS | 698710 | 534 | + | 0.552434 |
| rplI | PSPTO4930 | ribosomal protein L9 | RecName: Full=50S ribosomal protein L9; | chromosome | CDS | 5587055 | 447 | - | 0.565996 |
| rplJ | PSPTO0617 | ribosomal protein L10 | RecName: Full=50S ribosomal protein L10; | chromosome | CDS | 677322 | 501 | + | 0.550898 |
| rplK | PSPTO0615 | ribosomal protein L11 | RecName: Full=50S ribosomal protein L11; | chromosome | CDS | 675993 | 432 | + | 0.543981 |
| rplL | PSPTO0618 | ribosomal protein L7/L12 | RecName: Full=50S ribosomal protein L7/L12; | chromosome | CDS | 677902 | 366 | + | 0.508197 |
| rplM | PSPTO4426 | ribosomal protein L13 | RecName: Full=50S ribosomal protein L13; | chromosome | CDS | 4993329 | 429 | - | 0.550117 |
| rplN | PSPTO0636 | ribosomal protein L14 | RecName: Full=50S ribosomal protein L14; | chromosome | CDS | 696517 | 369 | + | 0.544715 |
| rplO | PSPTO0645 | ribosomal protein L15 | RecName: Full=50S ribosomal protein L15; | chromosome | CDS | 700291 | 435 | + | 0.577011 |
| rplP | PSPTO0633 | ribosomal protein L16 | RecName: Full=50S ribosomal protein L16; | chromosome | CDS | 695620 | 414 | + | 0.572464 |
| rplQ | PSPTO0652 | ribosomal protein L17 | RecName: Full=50S ribosomal protein L17; | chromosome | CDS | 704817 | 387 | + | 0.555556 |
| rplR | PSPTO0642 | ribosomal protein L18 | RecName: Full=50S ribosomal protein L18; | chromosome | CDS | 699254 | 351 | + | 0.589744 |
| rplS | PSPTO1476 | ribosomal protein L19 | RecName: Full=50S ribosomal protein L19; | chromosome | CDS | 1620789 | 351 | + | 0.524217 |
| rplT | PSPTO2381 | ribosomal protein L20 | RecName: Full=50S ribosomal protein L20; | chromosome | CDS | 2630125 | 357 | + | 0.521008 |
| rplU | PSPTO0797 | ribosomal protein L21 | RecName: Full=50S ribosomal protein L21; | chromosome | CDS | 863291 | 312 | + | 0.512821 |
| rplV | PSPTO0631 | ribosomal protein L22 | RecName: Full=50S ribosomal protein L22; | chromosome | CDS | 694575 | 333 | + | 0.570571 |
| rplW | PSPTO0628 | ribosomal protein L23 | RecName: Full=50S ribosomal protein L23; | chromosome | CDS | 693131 | 300 | + | 0.506667 |
| rplX | PSPTO0637 | ribosomal protein L24 | RecName: Full=50S ribosomal protein L24; | chromosome | CDS | 696897 | 315 | + | 0.51746 |
| rpmA | PSPTO0798 | ribosomal protein L27 | RecName: Full=50S ribosomal protein L27; | chromosome | CDS | 863635 | 276 | + | 0.565217 |
| rpmB | PSPTO0089 | ribosomal protein L28 | RecName: Full=50S ribosomal protein L28; | chromosome | CDS | 110860 | 234 | + | 0.517094 |
| rpmC | PSPTO0634 | ribosomal protein L29 | RecName: Full=50S ribosomal protein L29; | chromosome | CDS | 696033 | 192 | + | 0.520833 |
| rpmD | PSPTO0644 | ribosomal protein L30 | RecName: Full=50S ribosomal protein L30; | chromosome | CDS | 700111 | 177 | + | 0.497175 |
| rpmE-1 | PSPTO4183 | ribosomal protein L31 | RecName: Full=50S ribosomal protein L31 type B; | chromosome | CDS | 4713249 | 282 | - | 0.602837 |
| rpmE-2 | PSPTO5136 | ribosomal protein L31 | RecName: Full=50S ribosomal protein L31; | chromosome | CDS | 5845754 | 228 | - | 0.54386 |
| rpmF | PSPTO3835 | ribosomal protein L32 | RecName: Full=50S ribosomal protein L32; | chromosome | CDS | 4342460 | 183 | - | 0.535519 |
| rpmG | PSPTO0090 | ribosomal protein L33 | RecName: Full=50S ribosomal protein L33; | chromosome | CDS | 111105 | 156 | + | 0.435897 |
| rpmH | PSPTO5615 | ribosomal protein L34 | RecName: Full=50S ribosomal protein L34; | chromosome | CDS | 6396747 | 135 | - | 0.592593 |
| rpmI | PSPTO2380 | ribosomal protein L35 | RecName: Full=50S ribosomal protein L35; | chromosome | CDS | 2629901 | 195 | + | 0.497436 |
| rpmJ | PSPTO0647 | ribosomal protein L36 | RecName: Full=50S ribosomal protein L36; | chromosome | CDS | 702089 | 117 | + | 0.504274 |
| rpsA | PSPTO1750 | ribosomal protein S1 | RecName: Full=30S ribosomal protein S1; | chromosome | CDS | 1921117 | 1692 | + | 0.550827 |
| rpsB | PSPTO1534 | ribosomal protein S2 | RecName: Full=30S ribosomal protein S2; | chromosome | CDS | 1693557 | 744 | + | 0.548387 |
| rpsC | PSPTO0632 | ribosomal protein S3 | RecName: Full=30S ribosomal protein S3; | chromosome | CDS | 694921 | 687 | + | 0.531295 |
| rpsD | PSPTO0650 | ribosomal protein S4 | RecName: Full=30S ribosomal protein S4; | chromosome | CDS | 703131 | 621 | + | 0.534622 |
| rpsE | PSPTO0643 | ribosomal protein S5 | RecName: Full=30S ribosomal protein S5; | chromosome | CDS | 699608 | 501 | + | 0.53493 |
| rpsF | PSPTO4933 | ribosomal protein S6 | RecName: Full=30S ribosomal protein S6; | chromosome | CDS | 5588716 | 426 | - | 0.556338 |
| rpsG | PSPTO0622 | ribosomal protein S7 | RecName: Full=30S ribosomal protein S7; | chromosome | CDS | 687518 | 471 | + | 0.562633 |
| rpsH | PSPTO0640 | ribosomal protein S8 | RecName: Full=30S ribosomal protein S8; | chromosome | CDS | 698305 | 393 | + | 0.541985 |
| rpsI | PSPTO4425 | ribosomal protein S9 | RecName: Full=30S ribosomal protein S9; | chromosome | CDS | 4992922 | 393 | - | 0.572519 |
| rpsJ | PSPTO0625 | ribosomal protein S10 | RecName: Full=30S ribosomal protein S10; | chromosome | CDS | 691491 | 312 | + | 0.532051 |
| rpsK | PSPTO0649 | ribosomal protein S11 | RecName: Full=30S ribosomal protein S11; | chromosome | CDS | 702723 | 390 | + | 0.566667 |
| rpsL | PSPTO0621 | ribosomal protein S12 | RecName: Full=30S ribosomal protein S12; | chromosome | CDS | 687024 | 372 | + | 0.551075 |
| rpsM | PSPTO0648 | ribosomal protein S13 | RecName: Full=30S ribosomal protein S13; | chromosome | CDS | 702336 | 357 | + | 0.543417 |
| rpsN | PSPTO0639 | ribosomal protein S14 | RecName: Full=30S ribosomal protein S14; | chromosome | CDS | 697785 | 306 | + | 0.565359 |
| rpsO | PSPTO4487 | ribosomal protein S15 | RecName: Full=30S ribosomal protein S15; | chromosome | CDS | 5054683 | 270 | - | 0.540741 |
| rpsP | PSPTO1473 | ribosomal protein S16 | RecName: Full=30S ribosomal protein S16; | chromosome | CDS | 1619184 | 258 | + | 0.565891 |
| rpsQ | PSPTO0635 | ribosomal protein S17 | RecName: Full=30S ribosomal protein S17; | chromosome | CDS | 696227 | 267 | + | 0.52809 |
| rpsR | PSPTO4932 | ribosomal protein S18 | RecName: Full=30S ribosomal protein S18; | chromosome | CDS | 5588457 | 231 | - | 0.541126 |
| rpsS | PSPTO0630 | ribosomal protein S19 | RecName: Full=30S ribosomal protein S19; | chromosome | CDS | 694286 | 276 | + | 0.5 |
| rpsT | PSPTO0802 | ribosomal protein S20 | RecName: Full=30S ribosomal protein S20; | chromosome | CDS | 867260 | 279 | - | 0.523297 |
| rpsU | PSPTO0539 | ribosomal protein S21 | RecName: Full=30S ribosomal protein S21; | chromosome | CDS | 593192 | 216 | - | 0.555556 |
| rsmC | PSPTO1146 | ribosomal RNA small subunit methyltransferase C | RecName: Full=Ribosomal RNA small subunit methyltransferase C; EC=2.1.1.172; AltName: Full=16S rRNA m2G1207 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase RsmC; | chromosome | CDS | 1255859 | 999 | - | 0.617618 |
| serS | PSPTO3345 | seryl-tRNA synthetase | RecName: Full=Serine--tRNA ligase; EC=6.1.1.11; AltName: Full=Seryl-tRNA synthetase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec) synthetase; | chromosome | CDS | 3780801 | 1281 | - | 0.605777 |
| srmB | PSPTO1587 | ATP-dependent RNA helicase SrmB | SubName: Full=ATP-dependent RNA helicase SrmB; | chromosome | CDS | 1746321 | 1362 | + | 0.609398 |
| sun | PSPTO0179 | sun protein | RecName: Full=Ribosomal RNA small subunit methyltransferase B; EC=2.1.1.176; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase RsmB; | chromosome | CDS | 199982 | 1347 | + | 0.644395 |
| tgt | PSPTO1413 | queuine tRNA-ribosyltransferase | RecName: Full=Queuine tRNA-ribosyltransferase; EC=2.4.2.29; AltName: Full=Guanine insertion enzyme; AltName: Full=tRNA-guanine transglycosylase; | chromosome | CDS | 1553058 | 1116 | + | 0.602151 |
| thrS | PSPTO2378 | threonyl-tRNA synthetase | RecName: Full=Threonine--tRNA ligase; EC=6.1.1.3; AltName: Full=Threonyl-tRNA synthetase; Short=ThrRS; | chromosome | CDS | 2627367 | 1923 | + | 0.575143 |
| traO-1 | PSPTO_B0061 | traO protein | SubName: Full=TraO protein; | pDC3000B | CDS | 49799 | 1359 | + | 0.593083 |
| traO-2 | PSPTOA0053 | traO protein | SubName: Full=TraO protein; | pDC3000A | CDS | 54184 | 1359 | + | 0.593083 |
| trmA | PSPTO4654 | tRNA (uracil-5-)-methyltransferase | RecName: Full=tRNA/tmRNA (uracil-C(5))-methyltransferase; EC=2.1.1.-; EC=2.1.1.35; AltName: Full=tRNA (uracil(54)-C(5))-methyltransferase; AltName: Full=tRNA(m5U54)-methyltransferase; Short=RUMT; AltName: Full=tmRNA (uracil(341)-C(5))-methyltransferase; | chromosome | CDS | 5257608 | 1086 | + | 0.612339 |
| trmD | PSPTO1475 | tRNA (guanine-N1)-methyltransferase | RecName: Full=tRNA (guanine-N(1)-)-methyltransferase; EC=2.1.1.228; AltName: Full=M1G-methyltransferase; AltName: Full=tRNA [GM37] methyltransferase; | chromosome | CDS | 1619992 | 753 | + | 0.571049 |
| trmU | PSPTO3358 | tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase | RecName: Full=tRNA-specific 2-thiouridylase MnmA; EC=2.8.1.-; | chromosome | CDS | 3795943 | 1131 | + | 0.601238 |
| trpS | PSPTO4429 | tryptophanyl-tRNA synthetase | RecName: Full=Tryptophan--tRNA ligase; EC=6.1.1.2; AltName: Full=Tryptophanyl-tRNA synthetase; Short=TrpRS; | chromosome | CDS | 4996395 | 1350 | - | 0.607407 |
| tsf | PSPTO1535 | translation elongation factor Ts | RecName: Full=Elongation factor Ts; Short=EF-Ts; | chromosome | CDS | 1694491 | 864 | + | 0.542824 |
| tuf | PSPTO0624 | translation elongation factor Tu | RecName: Full=Elongation factor Tu; Short=EF-Tu; | chromosome | CDS | 690156 | 1194 | + | 0.558626 |
| tyrS | PSPTO0609 | tyrosyl-tRNA synthetase | RecName: Full=Tyrosine--tRNA ligase; EC=6.1.1.1; AltName: Full=Tyrosyl-tRNA synthetase; Short=TyrRS; | chromosome | CDS | 665010 | 1212 | + | 0.564356 |
| valS | PSPTO1268 | valyl-tRNA synthetase | RecName: Full=Valine--tRNA ligase; EC=6.1.1.9; AltName: Full=Valyl-tRNA synthetase; Short=ValRS; | chromosome | CDS | 1389375 | 2847 | - | 0.60836 |
| ychF | PSPTO1101 | GTP-binding protein YchF | RecName: Full=Ribosome-binding ATPase YchF; | chromosome | CDS | 1215889 | 1101 | - | 0.584923 |
| yfiA | PSPTO4454 | ribosomal subunit interface protein | SubName: Full=Ribosomal subunit interface protein; | chromosome | CDS | 5018797 | 309 | + | 0.514563 |
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