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2024-05-07 09:44:25

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Pseudomonas syringae pv. tomato str. DC3000, DC3000

Number of genes found: 199

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Pseudomonas syringae pv. tomato str. DC3000, DC3000
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA PSPTO1103 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5chromosome CDS1217760 612 - 0.568627
NA PSPTO4012 hypothetical proteinchromosome CDS4524602 762 - 0.585302
NA PSPTO4498 FtsJ cell division proteinchromosome CDS5067120 651 - 0.55914
NA PSPTO0556 nucleotidyltransferase family proteinchromosome CDS611814 633 + 0.627172
NA PSPTO2611 tRNA synthetase class II family proteinchromosome CDS2902216 582 - 0.582474
NA PSPTO4664 ATP-dependent RNA helicase rhlE, putativechromosome CDS5267751 1329 - 0.610986
NA PSPTO4841 translation initiation factor SUI1, putativechromosome CDS5480837 372 + 0.61828
NA PSPTO3006 deaminase AmnE, putativechromosome CDS3380581 435 - 0.641379
NA PSPTO2477 endoribonuclease L-PSP family proteinchromosome CDS2735702 399 - 0.611529
NA PSPTO5507 acetyltransferase, GNAT familychromosome CDS6272897 669 + 0.573991
NA PSPTO5387 stability cassette protein, putativechromosome CDS6119030 291 - 0.525773
NA PSPTO1361 amidase family proteinchromosome CDS1498345 1806 - 0.631783
NA PSPTO2040 modification methylase, HemK familychromosome CDS2223115 909 + 0.605061
NA PSPTO5120 amidase family proteinchromosome CDS5824060 1560 - 0.572436
NA PSPTO2569 amidase family proteinchromosome CDS2836915 1524 - 0.635171
NA PSPTO4021 S4 domain proteinchromosome CDS4532376 711 + 0.589311
NA PSPTO5070 ATP-dependent RNA helicase rhlE, putativechromosome CDS5774194 1890 + 0.630688
NA PSPTO4204 amidase family proteinchromosome CDS4735471 1329 - 0.659895
NA PSPTO3841 ribonuclease, Rne/Rng family proteinchromosome CDS4347221 3387 + 0.618541
NA PSPTO0668 conserved domain proteinchromosome CDS721761 669 - 0.54858
NA PSPTO1818 peptidyl-tRNA hydrolase domain proteinchromosome CDS1985964 414 + 0.596618
NA PSPTO4244 amidase family proteinchromosome CDS4779401 1815 + 0.640771
NA PSPTO2083 hypothetical proteinchromosome CDS2255556 528 - 0.473485
NA PSPTO0072 endoribonuclease L-PSP, putativechromosome CDS94399 381 - 0.572178
NA PSPTO3641 endoribonuclease L-PSP family proteinchromosome CDS4100364 393 + 0.631043
NA PSPTO1845 conserved hypothetical proteinchromosome CDS2015294 492 - 0.603659
NA PSPTO3115 hypothetical proteinchromosome CDS3501750 459 - 0.553377
NA PSPTO0967 glutamyl-tRNA synthetase-related proteinchromosome CDS1051822 888 - 0.617117
NA PSPTO5384 conserved hypothetical proteinchromosome CDS6117371 342 - 0.526316
NA PSPTO2205 conserved hypothetical proteinchromosome CDS2429130 582 - 0.608247
NA PSPTO4134 conserved hypothetical proteinchromosome CDS4660133 1047 + 0.627507
NA PSPTO2675 conserved hypothetical proteinchromosome CDS2970772 591 - 0.57868
NA PSPTO4019 conserved hypothetical protein TIGR01125chromosome CDS4530408 1332 + 0.602853
NA PSPTO3916 conserved hypothetical proteinchromosome CDS4431331 498 + 0.604418
NA PSPTO1693 RNA methyltransferase, TrmA familychromosome CDS1862367 1356 + 0.60767
NA PSPTO2126 TIM-barrel protein, yjbN familychromosome CDS2299104 1011 + 0.602374
NA PSPTO3750 conserved hypothetical proteinchromosome CDS4237660 624 - 0.586538
NA PSPTO3192 amidase family proteinchromosome CDS3582812 1428 - 0.632353
NA PSPTO4778 endoribonuclease L-PSP family proteinchromosome CDS5419226 384 - 0.622396
NA PSPTO0201 conserved domain proteinchromosome CDS224484 900 - 0.402222
NA PSPTO4645 methyltransferase, putativechromosome CDS5248092 1125 + 0.633778
NA PSPTO4864 TIM-barrel protein, putative, NifR3 familychromosome CDS5509603 1014 + 0.601578
NA PSPTO0174 SUA5/yciO/yrdC family domain proteinchromosome CDS195488 558 - 0.634409
NA PSPTO4499 conserved hypothetical protein TIGR00253chromosome CDS5067874 312 + 0.522436
NA PSPTO4661 acetyltransferase, GNAT familychromosome CDS5264717 570 - 0.621053
NA PSPTO5559 conserved hypothetical proteinchromosome CDS6333723 975 + 0.598974
NA PSPTO1420 RNA methyltransferase, TrmH family, group 1chromosome CDS1560768 774 + 0.621447
NA PSPTO2169 dihydrouridine synthase family proteinchromosome CDS2387868 954 + 0.624738
NA PSPTO3779 conserved hypothetical proteinchromosome CDS4281838 1356 - 0.606932
NA PSPTO4903 osmotically-inducible lipoprotein OsmE, putativechromosome CDS5552577 339 + 0.539823
NA PSPTO1775 ATP-dependent RNA helicase, DEAD box familychromosome CDS1943997 1689 + 0.616933
NA PSPTO0102 endoribonuclease L-PSP family proteinchromosome CDS122249 354 + 0.590395
NA PSPTO0706 lipopolysaccharide biosynthesis protein, putativechromosome CDS759038 762 + 0.547244
NA PSPTO0280 methionine aminopeptidase, putativechromosome CDS305562 705 - 0.563121
NA PSPTO2779 endoribonuclease L-PSP family proteinchromosome CDS3097484 387 + 0.596899
NA PSPTO5323 RNA methyltransferase, TrmH family, group 2chromosome CDS6052188 456 + 0.609649
NA PSPTO1457 cytidine/deoxycytidylate deaminase family proteinchromosome CDS1602041 510 + 0.639216
NA PSPTO4096 conserved domain proteinchromosome CDS4616010 141 + 0.560284
NA PSPTO4934 RNA methyltransferase, TrmH family, group 3chromosome CDS5589356 753 - 0.626826
NA PSPTO1744 initiation factor 2 subunit familychromosome CDS1912105 1077 + 0.640669
NA PSPTO4526 6-aminohexanoate-cyclic-dimer hydrolase, putativechromosome CDS5111194 1446 - 0.65491
NA PSPTO1011 acetyltransferase, GNAT familychromosome CDS1105251 564 - 0.601064
NA PSPTO1753 conserved hypothetical proteinchromosome CDS1924100 1443 + 0.589051
NA PSPTO1811 Sua5/YciO/YrdC/YwlC family proteinchromosome CDS1980240 630 + 0.625397
NA PSPTO1155 endoribonuclease L-PSP family proteinchromosome CDS1269120 384 - 0.591146
NA PSPTO2964 conserved hypothetical proteinchromosome CDS3333375 1485 - 0.63165
alaS PSPTO1842 alanyl-tRNA synthetasechromosome CDS2010440 2625 + 0.593524
amdA PSPTO2421 amidasechromosome CDS2669857 1536 + 0.629557
ansA PSPTO5501 L-asparaginase Ichromosome CDS6266793 1005 + 0.642786
argS PSPTO5138 arginyl-tRNA synthetasechromosome CDS5848467 1737 + 0.603339
aspS PSPTO3981 aspartyl-tRNA synthetasechromosome CDS4486896 1776 - 0.594032
avrPto1 PSPTO4001 type III effector protein AvrPto1chromosome CDS4514766 495 - 0.494949
cafA PSPTO4468 ribonuclease Gchromosome CDS5032433 1458 - 0.581619
cca PSPTO0544 tRNA nucleotidyltransferasechromosome CDS596465 1230 - 0.622764
cdd PSPTO1602 cytosine deaminasechromosome CDS1758068 438 + 0.577626
cysS PSPTO3742 cysteinyl-tRNA synthetasechromosome CDS4227791 1383 - 0.607375
dbpA PSPTO5007 ATP-independent RNA helicase DbpAchromosome CDS5691491 1380 + 0.608696
def-1 PSPTO0177 polypeptide deformylasechromosome CDS198474 507 + 0.564103
def-2 PSPTO1598 polypeptide deformylasechromosome CDS1755282 540 + 0.57037
dtd PSPTO5163 D-tyrosyl-tRNA(Tyr) deacylasechromosome CDS5876289 438 - 0.563927
efp PSPTO1765 translation elongation factor Pchromosome CDS1936301 570 + 0.536842
fmt PSPTO0178 methionyl-tRNA formyltransferasechromosome CDS199041 945 + 0.647619
frr PSPTO1537 ribosome recycling factorchromosome CDS1696300 558 + 0.580645
fusA PSPTO0623 translation elongation factor Gchromosome CDS688019 2106 + 0.542735
gatA PSPTO4474 glutamyl-tRNA(Gln) amidotransferase, A subunitchromosome CDS5037897 1452 + 0.626033
gatB PSPTO4475 glutamyl-tRNA(Gln) amidotransferase, B subunitchromosome CDS5039359 1446 + 0.589212
gatC PSPTO4473 glutamyl-tRNA(Gln) amidotransferase, C subunitchromosome CDS5037595 288 + 0.579861
glnS PSPTO3743 glutaminyl-tRNA synthetasechromosome CDS4229193 1710 - 0.595906
gltX PSPTO2166 glutamyl-tRNA synthetasechromosome CDS2383120 1482 + 0.60054
glyQ PSPTO0184 glycyl-tRNA synthetase, alpha subunitchromosome CDS206834 948 + 0.610759
glyS PSPTO0185 glycyl-tRNA synthetase, beta subunitchromosome CDS207778 2055 + 0.618005
gshB PSPTO5035 glutathione synthetasechromosome CDS5736905 960 + 0.622917
hemK PSPTO1110 hemK proteinchromosome CDS1225393 834 + 0.642686
hisS PSPTO1435 histidyl-tRNA synthetasechromosome CDS1572682 1290 + 0.583721
hopAB2 PSPTO3087 type III effector HopAB2chromosome CDS3468470 1662 - 0.591456
hopC1 PSPTO0589 type III effector HopC1chromosome CDS648896 810 - 0.469136
hslR PSPTO0237 heat shock protein 15chromosome CDS257588 408 + 0.598039
ileS PSPTO0806 isoleucyl-tRNA synthetasechromosome CDS870407 2832 + 0.603814
infA PSPTO3352 translation initiation factor IF-1chromosome CDS3788954 219 + 0.538813
infB PSPTO4490 translation initiation factor IF-2chromosome CDS5056608 2526 - 0.593824
infC PSPTO2379 translation initiation factor IF-3chromosome CDS2629307 534 + 0.518727
kptA PSPTO4788 RNA 2'-phosphotransferasechromosome CDS5427872 564 + 0.578014
ksgA PSPTO0551 dimethyladenosine transferasechromosome CDS604665 807 - 0.60223
leuS PSPTO4812 leucyl-tRNA synthetasechromosome CDS5449874 2607 + 0.602992
lysS PSPTO1501 lysyl-tRNA synthetasechromosome CDS1658196 1503 + 0.600133
map-1 PSPTO1533 methionine aminopeptidase, type Ichromosome CDS1692462 783 - 0.58493
map-2 PSPTO2362 methionine aminopeptidase, type Ichromosome CDS2615439 792 + 0.592172
miaA PSPTO4943 tRNA delta(2)-isopentenylpyrophosphate transferasechromosome CDS5602132 972 - 0.584362
miaB PSPTO4804 tRNA-i(6)A37 modification enzyme MiaBchromosome CDS5442888 1329 + 0.600451
omlA PSPTO4509 outer membrane lipoprotein OmlAchromosome CDS5080844 522 + 0.582375
pcnB PSPTO0963 poly(A) polymerasechromosome CDS1045046 1404 - 0.602564
pheS PSPTO2382 phenylalanyl-tRNA synthetase, alpha subunitchromosome CDS2630585 1017 + 0.584071
pnp PSPTO4486 polyribonucleotide nucleotidyltransferasechromosome CDS5052402 2106 - 0.582146
prfA PSPTO1109 peptide chain release factor 1chromosome CDS1224310 1083 + 0.594644
prfC PSPTO4579 peptide chain release factor 3chromosome CDS5175451 1584 + 0.600379
prmA PSPTO4862 ribosomal protein L11 methyltransferasechromosome CDS5507022 879 + 0.637088
proS PSPTO3988 prolyl-tRNA synthetasechromosome CDS4494353 1716 + 0.592075
pth PSPTO1102 peptidyl-tRNA hydrolasechromosome CDS1217011 585 - 0.603419
queA PSPTO1412 S-adenosylmethionine:tRNAribosyltransferase-isom erasechromosome CDS1551979 1065 + 0.624413
rbfA PSPTO4489 ribosome-binding factor Achromosome CDS5056032 417 - 0.58753
rhlB PSPTO1253 ATP-dependent RNA helicase RhlBchromosome CDS1375533 1194 - 0.608878
rimK PSPTO0234 ribosomal protein S6 modification proteinchromosome CDS255243 906 - 0.601545
rimM PSPTO1474 16S rRNA processing protein RimMchromosome CDS1619447 540 + 0.544444
rmf PSPTO2310 ribosome modulation factor-related proteinchromosome CDS2557345 216 - 0.537037
rnd PSPTO3922 ribonuclease Dchromosome CDS4434945 1134 - 0.61552
rnpA PSPTO5614 ribonuclease P protein componentchromosome CDS6396329 402 - 0.537313
rph PSPTO0077 ribonuclease PHchromosome CDS99223 723 + 0.611342
rplA PSPTO0616 ribosomal protein L1chromosome CDS676424 696 + 0.551724
rplB PSPTO0629 ribosomal protein L2chromosome CDS693445 825 + 0.556364
rplC PSPTO0626 ribosomal protein L3chromosome CDS691884 636 + 0.559748
rplD PSPTO0627 ribosomal protein L4chromosome CDS692532 603 + 0.542289
rplE PSPTO0638 ribosomal protein L5chromosome CDS697232 540 + 0.518519
rplF PSPTO0641 ribosomal protein L6chromosome CDS698710 534 + 0.552434
rplI PSPTO4930 ribosomal protein L9chromosome CDS5587055 447 - 0.565996
rplJ PSPTO0617 ribosomal protein L10chromosome CDS677322 501 + 0.550898
rplK PSPTO0615 ribosomal protein L11chromosome CDS675993 432 + 0.543981
rplL PSPTO0618 ribosomal protein L7/L12chromosome CDS677902 366 + 0.508197
rplM PSPTO4426 ribosomal protein L13chromosome CDS4993329 429 - 0.550117
rplN PSPTO0636 ribosomal protein L14chromosome CDS696517 369 + 0.544715
rplO PSPTO0645 ribosomal protein L15chromosome CDS700291 435 + 0.577011
rplP PSPTO0633 ribosomal protein L16chromosome CDS695620 414 + 0.572464
rplQ PSPTO0652 ribosomal protein L17chromosome CDS704817 387 + 0.555556
rplR PSPTO0642 ribosomal protein L18chromosome CDS699254 351 + 0.589744
rplS PSPTO1476 ribosomal protein L19chromosome CDS1620789 351 + 0.524217
rplT PSPTO2381 ribosomal protein L20chromosome CDS2630125 357 + 0.521008
rplU PSPTO0797 ribosomal protein L21chromosome CDS863291 312 + 0.512821
rplV PSPTO0631 ribosomal protein L22chromosome CDS694575 333 + 0.570571
rplW PSPTO0628 ribosomal protein L23chromosome CDS693131 300 + 0.506667
rplX PSPTO0637 ribosomal protein L24chromosome CDS696897 315 + 0.51746
rpmA PSPTO0798 ribosomal protein L27chromosome CDS863635 276 + 0.565217
rpmB PSPTO0089 ribosomal protein L28chromosome CDS110860 234 + 0.517094
rpmC PSPTO0634 ribosomal protein L29chromosome CDS696033 192 + 0.520833
rpmD PSPTO0644 ribosomal protein L30chromosome CDS700111 177 + 0.497175
rpmE-1 PSPTO4183 ribosomal protein L31chromosome CDS4713249 282 - 0.602837
rpmE-2 PSPTO5136 ribosomal protein L31chromosome CDS5845754 228 - 0.54386
rpmF PSPTO3835 ribosomal protein L32chromosome CDS4342460 183 - 0.535519
rpmG PSPTO0090 ribosomal protein L33chromosome CDS111105 156 + 0.435897
rpmH PSPTO5615 ribosomal protein L34chromosome CDS6396747 135 - 0.592593
rpmI PSPTO2380 ribosomal protein L35chromosome CDS2629901 195 + 0.497436
rpmJ PSPTO0647 ribosomal protein L36chromosome CDS702089 117 + 0.504274
rpsA PSPTO1750 ribosomal protein S1chromosome CDS1921117 1692 + 0.550827
rpsB PSPTO1534 ribosomal protein S2chromosome CDS1693557 744 + 0.548387
rpsC PSPTO0632 ribosomal protein S3chromosome CDS694921 687 + 0.531295
rpsD PSPTO0650 ribosomal protein S4chromosome CDS703131 621 + 0.534622
rpsE PSPTO0643 ribosomal protein S5chromosome CDS699608 501 + 0.53493
rpsF PSPTO4933 ribosomal protein S6chromosome CDS5588716 426 - 0.556338
rpsG PSPTO0622 ribosomal protein S7chromosome CDS687518 471 + 0.562633
rpsH PSPTO0640 ribosomal protein S8chromosome CDS698305 393 + 0.541985
rpsI PSPTO4425 ribosomal protein S9chromosome CDS4992922 393 - 0.572519
rpsJ PSPTO0625 ribosomal protein S10chromosome CDS691491 312 + 0.532051
rpsK PSPTO0649 ribosomal protein S11chromosome CDS702723 390 + 0.566667
rpsL PSPTO0621 ribosomal protein S12chromosome CDS687024 372 + 0.551075
rpsM PSPTO0648 ribosomal protein S13chromosome CDS702336 357 + 0.543417
rpsN PSPTO0639 ribosomal protein S14chromosome CDS697785 306 + 0.565359
rpsO PSPTO4487 ribosomal protein S15chromosome CDS5054683 270 - 0.540741
rpsP PSPTO1473 ribosomal protein S16chromosome CDS1619184 258 + 0.565891
rpsQ PSPTO0635 ribosomal protein S17chromosome CDS696227 267 + 0.52809
rpsR PSPTO4932 ribosomal protein S18chromosome CDS5588457 231 - 0.541126
rpsS PSPTO0630 ribosomal protein S19chromosome CDS694286 276 + 0.5
rpsT PSPTO0802 ribosomal protein S20chromosome CDS867260 279 - 0.523297
rpsU PSPTO0539 ribosomal protein S21chromosome CDS593192 216 - 0.555556
rsmC PSPTO1146 ribosomal RNA small subunit methyltransferase Cchromosome CDS1255859 999 - 0.617618
serS PSPTO3345 seryl-tRNA synthetasechromosome CDS3780801 1281 - 0.605777
srmB PSPTO1587 ATP-dependent RNA helicase SrmBchromosome CDS1746321 1362 + 0.609398
sun PSPTO0179 sun proteinchromosome CDS199982 1347 + 0.644395
tgt PSPTO1413 queuine tRNA-ribosyltransferasechromosome CDS1553058 1116 + 0.602151
thrS PSPTO2378 threonyl-tRNA synthetasechromosome CDS2627367 1923 + 0.575143
traO-1 PSPTO_B0061 traO proteinpDC3000B CDS49799 1359 + 0.593083
traO-2 PSPTOA0053 traO proteinpDC3000A CDS54184 1359 + 0.593083
trmA PSPTO4654 tRNA (uracil-5-)-methyltransferasechromosome CDS5257608 1086 + 0.612339
trmD PSPTO1475 tRNA (guanine-N1)-methyltransferasechromosome CDS1619992 753 + 0.571049
trmU PSPTO3358 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS3795943 1131 + 0.601238
trpS PSPTO4429 tryptophanyl-tRNA synthetasechromosome CDS4996395 1350 - 0.607407
tsf PSPTO1535 translation elongation factor Tschromosome CDS1694491 864 + 0.542824
tuf PSPTO0624 translation elongation factor Tuchromosome CDS690156 1194 + 0.558626
tyrS PSPTO0609 tyrosyl-tRNA synthetasechromosome CDS665010 1212 + 0.564356
valS PSPTO1268 valyl-tRNA synthetasechromosome CDS1389375 2847 - 0.60836
ychF PSPTO1101 GTP-binding protein YchFchromosome CDS1215889 1101 - 0.584923
yfiA PSPTO4454 ribosomal subunit interface proteinchromosome CDS5018797 309 + 0.514563