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2024-05-17 11:51:52

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Buchnera aphidicola str. Bp (Baizongia pistaciae), Bp (Baizongia pistaciae)

Number of genes found: 116

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Buchnera aphidicola str. Bp (Baizongia pistaciae), Bp (Baizongia pistaciae)
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
alaS bbp364 alanyl-tRNA synthetaseRecName: Full=Alanine--tRNA ligase; EC=6.1.1.7; AltName: Full=Alanyl-tRNA synthetase; Short=AlaRS; chromosome CDS420763 2643 + 0.251986
argS bbp224 arginyl-tRNA synthetaseRecName: Full=Arginine--tRNA ligase; EC=6.1.1.19; AltName: Full=Arginyl-tRNA synthetase; Short=ArgRS; chromosome CDS264814 1737 - 0.244099
asnS bbp329 asparaginyl-tRNA synthetaseRecName: Full=Asparagine--tRNA ligase; EC=6.1.1.22; AltName: Full=Asparaginyl-tRNA synthetase; Short=AsnRS; chromosome CDS379444 1401 - 0.275517
aspS bbp293 aspartyl-tRNA synthetaseRecName: Full=Aspartate--tRNA ligase; EC=6.1.1.12; AltName: Full=Aspartyl-tRNA synthetase; Short=AspRS; chromosome CDS342535 1731 + 0.263432
cca bbp057 tRNA nucleotidyltransferaseRecName: Full=CCA-adding enzyme; EC=2.7.7.72; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; chromosome CDS64717 1260 + 0.255556
cysS bbp431 cysteinyl-tRNA synthetaseRecName: Full=Cysteine--tRNA ligase; EC=6.1.1.16; AltName: Full=Cysteinyl-tRNA synthetase; Short=CysRS; chromosome CDS505190 1410 - 0.264539
deaD bbp335 ATP-dependent RNA helicaseRecName: Full=ATP-dependent RNA helicase DeaD; EC=3.6.4.13; AltName: Full=Cold-shock DEAD box protein A; chromosome CDS390346 1809 - 0.305694
def bbp439 polypeptide deformylaseRecName: Full=Peptide deformylase; Short=PDF; EC=3.5.1.88; AltName: Full=Polypeptide deformylase; chromosome CDS513039 483 + 0.256729
efp bbp023 elongation factor PRecName: Full=Elongation factor P; Short=EF-P; chromosome CDS23004 570 + 0.249123
fmt bbp440 methionyl-tRNA formyltransferaseRecName: Full=Methionyl-tRNA formyltransferase; EC=2.1.2.9; chromosome CDS513523 972 + 0.279835
frr bbp216 ribosome recycling factorRecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor; chromosome CDS252164 552 + 0.231884
ftsJ bbp346 ribosomal RNA large subunit methyltransferase JRecName: Full=Ribosomal RNA large subunit methyltransferase E; EC=2.1.1.166; AltName: Full=23S rRNA Um2552 methyltransferase; AltName: Full=rRNA (uridine-2-O-)-methyltransferase; chromosome CDS405411 633 - 0.301738
fusA bbp470 elongation factor GRecName: Full=Elongation factor G; Short=EF-G; chromosome CDS531310 2133 - 0.327239
glnS bbp375 glutaminyl-tRNA synthetaseRecName: Full=Glutamine--tRNA ligase; EC=6.1.1.18; AltName: Full=Glutaminyl-tRNA synthetase; Short=GlnRS; chromosome CDS429617 1653 + 0.257713
gltX bbp065 glutamyl-tRNA synthetaseRecName: Full=Glutamate--tRNA ligase; EC=6.1.1.17; AltName: Full=Glutamyl-tRNA synthetase; Short=GluRS; chromosome CDS73495 1419 + 0.262861
glyQ bbp127 Glycyl-tRNA synthetase alpha chainRecName: Full=Glycine--tRNA ligase alpha subunit; EC=6.1.1.14; AltName: Full=Glycyl-tRNA synthetase alpha subunit; Short=GlyRS; chromosome CDS140274 903 - 0.269103
glyS bbp126 glycyl-tRNA synthetase beta chain (Glycine--tRNA ligase beta chain) (GlyRS)RecName: Full=Glycine--tRNA ligase beta subunit; EC=6.1.1.14; AltName: Full=Glycyl-tRNA synthetase beta subunit; Short=GlyRS; chromosome CDS138135 2094 - 0.242598
gshB bbp490 glutathione synthetaseRecName: Full=Glutathione synthetase; EC=6.3.2.3; AltName: Full=GSH synthetase; Short=GSH-S; Short=GSHase; AltName: Full=Glutathione synthase; chromosome CDS552392 975 + 0.267692
hemK bbp162 HemKRecName: Full=Release factor glutamine methyltransferase; Short=RF MTase; EC=2.1.1.297; AltName: Full=N5-glutamine methyltransferase PrmC; AltName: Full=Protein-(glutamine-N5) MTase PrmC; AltName: Full=Protein-glutamine N-methyltransferase PrmC; chromosome CDS182787 834 + 0.260192
hisS bbp267 histidyl-tRNA synthetaseRecName: Full=Histidine--tRNA ligase; EC=6.1.1.21; AltName: Full=Histidyl-tRNA synthetase; Short=HisRS; chromosome CDS307258 1278 + 0.262911
ileS bbp139 isoleucyl-tRNA synthetaseRecName: Full=Isoleucine--tRNA ligase; EC=6.1.1.5; AltName: Full=Isoleucyl-tRNA synthetase; Short=IleRS; chromosome CDS153486 2820 - 0.269858
infA bbp292 translation initiation factor IF-1RecName: Full=Translation initiation factor IF-1; chromosome CDS342241 219 + 0.315068
infB bbp340 translation initiation factor IF-2RecName: Full=Translation initiation factor IF-2; chromosome CDS396760 2631 - 0.265678
infC bbp120 translation initiation factor IF-3RecName: Full=Translation initiation factor IF-3; chromosome CDS132598 546 + 0.28022
ksgA bbp131 dimethyladenosine transferaseRecName: Full=Ribosomal RNA small subunit methyltransferase A; EC=2.1.1.182; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N, N-adenosyl(rRNA) dimethyltransferase; chromosome CDS144271 783 + 0.247765
leuS bbp395 leucyl-tRNA synthetaseRecName: Full=Leucine--tRNA ligase; EC=6.1.1.4; AltName: Full=Leucyl-tRNA synthetase; Short=LeuRS; chromosome CDS456713 2586 + 0.265275
lysS bbp389 lysyl-tRNA synthetaseRecName: Full=Lysine--tRNA ligase; EC=6.1.1.6; AltName: Full=Lysyl-tRNA synthetase; Short=LysRS; chromosome CDS448844 1503 - 0.25682
map bbp212 methionine aminopeptidaseRecName: Full=Methionine aminopeptidase; Short=MAP; Short=MetAP; EC=3.4.11.18; AltName: Full=Peptidase M; chromosome CDS248425 801 - 0.278402
metG bbp103 methionyl-tRNA synthetaseRecName: Full=Methionine--tRNA ligase; EC=6.1.1.10; AltName: Full=Methionyl-tRNA synthetase; Short=MetRS; chromosome CDS113619 1638 + 0.26801
miaA bbp514 tRNA delta(2)-isopentenylpyrophosphate transferaseRecName: Full=tRNA dimethylallyltransferase; EC=2.5.1.75; AltName: Full=Dimethylallyl diphosphate:tRNA dimethylallyltransferase; Short=DMAPP:tRNA dimethylallyltransferase; Short=DMATase; AltName: Full=Isopentenyl-diphosphate:tRNA isopentenyltransferase; Short=IPP transferase; Short=IPPT; Short=IPTase; chromosome CDS574629 972 - 0.25823
pheS bbp123 phenylalanyl-tRNA synthetase alpha chainRecName: Full=Phenylalanine--tRNA ligase alpha subunit; EC=6.1.1.20; AltName: Full=Phenylalanyl-tRNA synthetase alpha subunit; Short=PheRS; chromosome CDS133982 987 + 0.257345
pnp bbp336 polyribonucleotide nucleotidyltransferaseRecName: Full=Polyribonucleotide nucleotidyltransferase; EC=2.7.7.8; AltName: Full=Polynucleotide phosphorylase; Short=PNPase; chromosome CDS392685 2082 - 0.315562
prfA bbp161 peptide chain release factor 1RecName: Full=Peptide chain release factor 1; Short=RF-1; chromosome CDS181702 1089 + 0.295684
prfB bbp390 peptide chain release factor 2RecName: Full=Peptide chain release factor 2; Short=RF-2; chromosome CDS450407 1014 - 0.280079
prfC bbp485 peptide chain release factor 3RecName: Full=Peptide chain release factor 3; Short=RF-3; chromosome CDS544861 1599 - 0.267042
proS bbp221 prolyl-tRNA synthetaseRecName: Full=Proline--tRNA ligase; EC=6.1.1.15; AltName: Full=Prolyl-tRNA synthetase; Short=ProRS; chromosome CDS259265 1725 - 0.251594
pth bbp179 peptidyl-tRNA hydrolaseRecName: Full=Peptidyl-tRNA hydrolase; Short=PTH; EC=3.1.1.29; chromosome CDS202401 624 + 0.25641
rbfA bbp339 ribosome-binding factor ARecName: Full=Ribosome-binding factor A; chromosome CDS396349 375 - 0.221333
rimM bbp358 16S rRNA processing protein rimMRecName: Full=Ribosome maturation factor RimM; chromosome CDS415221 543 + 0.257827
rluC bbp318 ribosomal large subunit pseudouridine synthase DRecName: Full=Ribosomal large subunit pseudouridine synthase C; EC=5.4.99.24; AltName: Full=23S rRNA pseudouridine(955/2504/2580) synthase; AltName: Full=rRNA pseudouridylate synthase C; AltName: Full=rRNA-uridine isomerase C; chromosome CDS370167 948 + 0.240506
rluD bbp363 ribosomal large subunit pseudouridine synthase DRecName: Full=Ribosomal large subunit pseudouridine synthase D; EC=5.4.99.23; AltName: Full=23S rRNA pseudouridine(1911/1915/1917) synthase; AltName: Full=rRNA pseudouridylate synthase D; AltName: Full=rRNA-uridine isomerase D; chromosome CDS419471 954 - 0.27044
rne bbp317 ribonuclease GRecName: Full=Putative ribonuclease E; Short=RNase E; EC=3.1.26.12; chromosome CDS368538 1233 - 0.282238
rnpA bbp014 ribonuclease P protein componentRecName: Full=Ribonuclease P protein component; Short=RNase P protein; Short=RNaseP protein; EC=3.1.26.5; AltName: Full=Protein C5; chromosome CDS15067 345 + 0.26087
rplA bbp038 50S ribosomal protein L1RecName: Full=50S ribosomal protein L1; chromosome CDS47970 702 - 0.264957
rplB bbp464 50S ribosomal protein L2RecName: Full=50S ribosomal protein L2; chromosome CDS526788 822 - 0.339416
rplC bbp467 50S ribosomal protein L3RecName: Full=50S ribosomal protein L3; chromosome CDS528574 645 - 0.300775
rplD bbp466 50S ribosomal protein L4RecName: Full=50S ribosomal protein L4; chromosome CDS527964 609 - 0.302135
rplE bbp455 50S ribosomal protein L5RecName: Full=50S ribosomal protein L5; chromosome CDS523115 540 - 0.268519
rplF bbp452 50S ribosomal protein L6RecName: Full=50S ribosomal protein L6; chromosome CDS521802 540 - 0.309259
rplI bbp508 50S ribosomal protein L9RecName: Full=50S ribosomal protein L9; chromosome CDS568911 465 - 0.234409
rplJ bbp037 50S ribosomal protein L10RecName: Full=50S ribosomal protein L10; chromosome CDS47182 507 - 0.295858
rplK bbp039 50S ribosomal protein L11RecName: Full=50S ribosomal protein L11; chromosome CDS48668 441 - 0.29932
rplL bbp036 50S ribosomal protein L7/L12RecName: Full=50S ribosomal protein L7/L12; chromosome CDS46740 369 - 0.300813
rplM bbp354 50S ribosomal protein L13RecName: Full=50S ribosomal protein L13; chromosome CDS411351 435 - 0.298851
rplN bbp457 50S ribosomal protein L14RecName: Full=50S ribosomal protein L14; chromosome CDS523997 369 - 0.338753
rplO bbp448 50S ribosomal protein L15RecName: Full=50S ribosomal protein L15; chromosome CDS520282 444 - 0.259009
rplP bbp460 50S ribosomal protein L16RecName: Full=50S ribosomal protein L16; chromosome CDS524968 411 - 0.326034
rplQ bbp441 50S ribosomal protein L17RecName: Full=50S ribosomal protein L17; chromosome CDS515758 390 - 0.3
rplR bbp451 50S ribosomal protein L18RecName: Full=50S ribosomal protein L18; chromosome CDS521435 366 - 0.319672
rplS bbp360 50S ribosomal protein L19RecName: Full=50S ribosomal protein L19; chromosome CDS416573 357 + 0.252101
rplT bbp122 50S ribosomal protein L20RecName: Full=50S ribosomal protein L20; chromosome CDS133429 381 + 0.330709
rplU bbp350 50S ribosomal protein L21RecName: Full=50S ribosomal protein L21; chromosome CDS408888 339 + 0.227139
rplV bbp462 50S ribosomal protein L22RecName: Full=50S ribosomal protein L22; chromosome CDS526104 360 - 0.291667
rplW bbp465 50S ribosomal protein L23RecName: Full=50S ribosomal protein L23; chromosome CDS527650 303 - 0.270627
rplX bbp456 ribosomal protein L24RecName: Full=50S ribosomal protein L24; chromosome CDS523670 315 - 0.244444
rplY bbp129 50S ribosomal protein L25RecName: Full=50S ribosomal protein L25; chromosome CDS142440 294 + 0.221088
rpmA bbp351 50S ribosomal protein L27RecName: Full=50S ribosomal protein L27; chromosome CDS409216 258 + 0.341085
rpmB bbp080 50S ribosomal protein L28RecName: Full=50S ribosomal protein L28; chromosome CDS86349 225 - 0.275556
rpmC bbp459 50S ribosomal protein L29RecName: Full=50S ribosomal protein L29; chromosome CDS524771 198 - 0.287879
rpmD bbp449 50S ribosomal protein L30RecName: Full=50S ribosomal protein L30; chromosome CDS520736 177 - 0.293785
rpmE bbp522 50S ribosomal protein L31RecName: Full=50S ribosomal protein L31; chromosome CDS585580 210 - 0.271429
rpmF bbp319 50S ribosomal protein L32RecName: Full=50S ribosomal protein L32; chromosome CDS371349 165 + 0.315152
rpmG bbp079 50S ribosomal protein L33RecName: Full=50S ribosomal protein L33; chromosome CDS86140 168 - 0.22619
rpmH bbp013 50S ribosomal protein L34RecName: Full=50S ribosomal protein L34; chromosome CDS14903 144 + 0.340278
rpmI bbp121 50S ribosomal protein L35RecName: Full=50S ribosomal protein L35; chromosome CDS133189 198 + 0.272727
rpmJ bbp446 50S ribosomal protein L36RecName: Full=50S ribosomal protein L36; chromosome CDS518799 117 - 0.299145
rpsA bbp286 30S ribosomal protein S1RecName: Full=30S ribosomal protein S1; chromosome CDS334005 1731 - 0.292317
rpsB bbp213 ribosomal protein S2RecName: Full=30S ribosomal protein S2; chromosome CDS249579 687 + 0.279476
rpsC bbp461 30S ribosomal protein S3RecName: Full=30S ribosomal protein S3; chromosome CDS525391 708 - 0.336158
rpsD bbp443 ribosomal protein S4RecName: Full=30S ribosomal protein S4; chromosome CDS517223 621 - 0.304348
rpsE bbp450 30S ribosomal protein S5RecName: Full=30S ribosomal protein S5; chromosome CDS520909 558 - 0.336918
rpsF bbp510 30S ribosomal protein S6RecName: Full=30S ribosomal protein S6; chromosome CDS569763 360 - 0.269444
rpsG bbp471 30S ribosomal protein S7RecName: Full=30S ribosomal protein S7; chromosome CDS533541 471 - 0.358811
rpsH bbp453 30S ribosomal protein S8RecName: Full=30S ribosomal protein S8; chromosome CDS522356 393 - 0.26972
rpsI bbp353 ribosomal protein S9RecName: Full=30S ribosomal protein S9; chromosome CDS410946 393 - 0.3257
rpsJ bbp468 30S ribosomal protein S10RecName: Full=30S ribosomal protein S10; chromosome CDS529254 315 - 0.349206
rpsK bbp444 30S ribosomal protein S11RecName: Full=30S ribosomal protein S11; chromosome CDS517892 390 - 0.328205
rpsL bbp472 30S ribosomal protein S12RecName: Full=30S ribosomal protein S12; chromosome CDS534079 372 - 0.344086
rpsM bbp445 30S ribosomal protein S13RecName: Full=30S ribosomal protein S13; chromosome CDS518300 357 - 0.322129
rpsN bbp454 30S ribosomal protein S14RecName: Full=30S ribosomal protein S14; chromosome CDS522785 306 - 0.349673
rpsO bbp337 30S ribosomal protein S15RecName: Full=30S ribosomal protein S15; chromosome CDS395007 270 - 0.233333
rpsP bbp357 30S ribosomal protein S16RecName: Full=30S ribosomal protein S16; chromosome CDS414937 264 + 0.253788
rpsQ bbp458 30S ribosomal protein S17RecName: Full=30S ribosomal protein S17; chromosome CDS524521 258 - 0.271318
rpsR bbp509 30S ribosomal protein S18RecName: Full=30S ribosomal protein S18; chromosome CDS569416 228 - 0.311404
rpsS bbp463 S19 ribosomal proteinRecName: Full=30S ribosomal protein S19; chromosome CDS526490 279 - 0.326165
rpsT bbp140 30S ribosomal protein S20RecName: Full=30S ribosomal protein S20; chromosome CDS156975 261 + 0.249042
rpsU bbp054 30S ribosomal protein S21RecName: Full=30S ribosomal protein S21; chromosome CDS62223 216 - 0.328704
rsmC bbp305 ribosomal RNA small subunit methyltransferase CRecName: Full=Ribosomal RNA small subunit methyltransferase C; EC=2.1.1.172; AltName: Full=16S rRNA m2G1207 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase RsmC; chromosome CDS357059 981 + 0.231397
serS bbp290 seryl-tRNA synthetaseRecName: Full=Serine--tRNA ligase; EC=6.1.1.11; AltName: Full=Seryl-tRNA synthetase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec) synthetase; chromosome CDS339256 1299 - 0.277136
thrS bbp119 threonyl-tRNA synthetaseRecName: Full=Threonine--tRNA ligase; EC=6.1.1.3; AltName: Full=Threonyl-tRNA synthetase; Short=ThrRS; chromosome CDS130663 1932 + 0.287267
trmD bbp359 tRNA (Guanine-N1)-methyltransferaseRecName: Full=tRNA (guanine-N(1)-)-methyltransferase; EC=2.1.1.228; AltName: Full=M1G-methyltransferase; AltName: Full=tRNA [GM37] methyltransferase; chromosome CDS415789 753 + 0.26826
trmU bbp242 putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferaseRecName: Full=tRNA-specific 2-thiouridylase MnmA; EC=2.8.1.-; chromosome CDS279218 1113 + 0.262354
trpS bbp478 tryptophanyl-tRNA synthetaseRecName: Full=Tryptophan--tRNA ligase; EC=6.1.1.2; AltName: Full=Tryptophanyl-tRNA synthetase; Short=TrpRS; chromosome CDS538176 1002 - 0.276447
truA bbp185 tRNA pseudouridine synthase A (Pseudouridylate synthase I) (Pseudouridine synthase I) (Uracil hydrolyase) (PSU-I)RecName: Full=tRNA pseudouridine synthase A; EC=5.4.99.12; AltName: Full=tRNA pseudouridine(38-40) synthase; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I; chromosome CDS210481 795 + 0.300629
truB bbp338 tRNA pseudouridine synthase BRecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.25; AltName: Full=tRNA pseudouridine(55) synthase; Short=Psi55 synthase; AltName: Full=tRNA pseudouridylate synthase; AltName: Full=tRNA-uridine isomerase; chromosome CDS395408 909 - 0.272827
tsf bbp214 elongation factor TsRecName: Full=Elongation factor Ts; Short=EF-Ts; chromosome CDS250352 801 + 0.277154
tuf bbp469 elongation factor TuRecName: Full=Elongation factor Tu; Short=EF-Tu; chromosome CDS530062 1185 - 0.360338
tyrS bbp115 tyrosyl-tRNA synthetaseRecName: Full=Tyrosine--tRNA ligase; EC=6.1.1.1; AltName: Full=Tyrosyl-tRNA synthetase; Short=TyrRS; chromosome CDS125590 1275 + 0.273725
valS bbp331 valyl-tRNA synthetaseRecName: Full=Valine--tRNA ligase; EC=6.1.1.9; AltName: Full=Valyl-tRNA synthetase; Short=ValRS; chromosome CDS382967 2871 - 0.265064
ychF bbp180 hypothetical proteinRecName: Full=Ribosome-binding ATPase YchF; chromosome CDS203069 1092 + 0.260989
yciL bbp262 ribosomal large subunit pseudouridine synthase BRecName: Full=Ribosomal large subunit pseudouridine synthase B; EC=5.4.99.22; AltName: Full=23S rRNA pseudouridine(2605) synthase; AltName: Full=rRNA pseudouridylate synthase B; AltName: Full=rRNA-uridine isomerase B; chromosome CDS300608 744 + 0.262097
yfhC bbp236 putative deaminaseRecName: Full=tRNA-specific adenosine deaminase; EC=3.5.4.33; chromosome CDS273380 489 + 0.247444
yhaR bbp334 translational inhibitor proteinRecName: Full=RutC family protein bbp_334; chromosome CDS389813 381 + 0.251969
yjeA bbp528 putative lysyl-tRNA synthetaseRecName: Full=Elongation factor P--(R)-beta-lysine ligase; Short=EF-P--(R)-beta-lysine ligase; EC=6.3.1.-; AltName: Full=EF-P post-translational modification enzyme A; AltName: Full=EF-P-lysine lysyltransferase; chromosome CDS592490 969 - 0.266254
yleA bbp392 hypothetical proteinRecName: Full=tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; EC=2.8.4.3; AltName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase; chromosome CDS452828 1338 + 0.27429
yrdC bbp438 conserved hypothetical proteinRecName: Full=Threonylcarbamoyl-AMP synthase; Short=TC-AMP synthase; EC=2.7.7.87; AltName: Full=L-threonylcarbamoyladenylate synthase; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaC; AltName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein TsaC; chromosome CDS512306 561 - 0.28877