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2024-05-06 05:46:49

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Chromobacterium violaceum ATCC 12472, ATCC 12472

Number of genes found: 194

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Chromobacterium violaceum ATCC 12472, ATCC 12472
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA CV0748 probable transformylasechromosome CDS768301 918 - 0.708061
NA CV4383 probable RNA methyltransferasechromosome CDS4727054 465 + 0.6
NA CV1740 probable acetyltransferaseschromosome CDS1890304 711 + 0.659634
NA CV4301 probable hemolysinchromosome CDS4641363 747 - 0.696118
NA CV1157 probable pseudouridine synthasechromosome CDS1215905 675 + 0.699259
NA CV2918 probable ribosomal protein N-acetyltransferasechromosome CDS3199233 567 + 0.679012
NA CV4307 hypothetical proteinchromosome CDS4649798 768 - 0.751302
NA CV3103 probable Bifuncional: UDP-N-acetylglucosamineglucose-1-phosphate thymidylyltransferase; Glucosamine-1-phosphatechromosome CDS3391237 615 - 0.678049
NA CV4149 conserved hypothetical proteinchromosome CDS4489369 1335 + 0.645693
NA CV1694 conserved hypothetical proteinchromosome CDS1832489 624 + 0.669872
NA CV3386 conserved hypothetical proteinchromosome CDS3679923 1440 - 0.672222
NA CV2875 probable acetyltransferase proteinchromosome CDS3150147 564 + 0.663121
NA CV3663 probable pseudouridine synthasechromosome CDS3964138 747 - 0.654619
NA CV1149 probable RNA methyltransferasechromosome CDS1208347 747 + 0.678715
NA CV3666 probable Acetyltransferasechromosome CDS3968440 567 + 0.68254
NA CV4226 probable sugar-phosphate nucleotidyl transferasechromosome CDS4559967 699 - 0.719599
NA CV2089 probable ATP-dependent RNA helicasechromosome CDS2275515 1689 + 0.67614
NA CV3711 conserved hypothetical proteinchromosome CDS4013940 357 - 0.703081
NA CV2346 probable pseudouridylate synthaseschromosome CDS2530831 750 - 0.654667
NA CV2171 probable adenine-specific methylasechromosome CDS2344200 903 - 0.651163
NA CV1251 conserved hypothetical proteinchromosome CDS1316511 453 + 0.675497
NA CV1289 probable ribosomal-protein-serine acetyltransferasechromosome CDS1355872 528 + 0.672348
NA CV3058 conserved hypothetical proteinchromosome CDS3338449 537 - 0.709497
NA CV0275 hypothetical proteinchromosome CDS284669 507 + 0.583826
NA CV0888 hypothetical proteinchromosome CDS916210 240 + 0.6375
NA CV4333 conserved hypothetical proteinchromosome CDS4674096 507 + 0.666667
NA CV2425 conserved hypothetical proteinchromosome CDS2608599 630 + 0.646032
NA CV2030 probable tRNA methyltransferasechromosome CDS2212099 801 + 0.695381
NA CV1288 probable ribosomal-protein-serine acetyltransferasechromosome CDS1355309 561 + 0.682709
NA CV0928 probable translational inhibitor proteinchromosome CDS962304 381 + 0.635171
NA CV2142 conserved hypothetical proteinchromosome CDS2325895 309 - 0.621359
NA CV2787 probable ribosome-associated heat shock protein Hsp15chromosome CDS3021497 405 - 0.681481
NA CV2338 probable ribosomal-protein-alanine N-acetyltransferasechromosome CDS2526728 537 - 0.621974
NA CV4262 probable sun protein homologchromosome CDS4596218 1251 - 0.693046
NA CV1476 hypothetical proteinchromosome CDS1574725 666 + 0.575075
NA CV3333 probable sigma-54 modulation proteinchromosome CDS3631574 333 + 0.591592
NA CV0924 conserved hypothetical proteinchromosome CDS958236 1044 + 0.646552
NA CV0550 probable Sua5/YciO/YrdC family proteinchromosome CDS588110 582 + 0.689003
NA CV1820 probable ribonuclease Echromosome CDS1975805 2946 + 0.679905
NA CV4094 probable ribosomal-protein-serine acetyltransferasechromosome CDS4430757 717 - 0.642957
NA CV3645 probable RNA methyltransferasechromosome CDS3942523 735 + 0.669388
NA CV1373 probable oxidoreductasechromosome CDS1445751 1317 + 0.649962
NA CV3433 probable glutamyl-tRNA synthetase-related proteinchromosome CDS3730152 897 - 0.704571
NA CV0314 conserved hypothetical proteinchromosome CDS332104 498 + 0.708835
NA CV3471 probable cytidine deaminasechromosome CDS3765060 735 + 0.730612
NA CV3618 probable sun homolog proteinchromosome CDS3922948 1260 + 0.669048
NA CV4055 conserved hypothetical proteinchromosome CDS4386013 1092 - 0.644689
NA CV4043 probable ribosomal-protein-alanine N-acetyltransferasechromosome CDS4375682 558 + 0.682796
NA CV3077 conserved hypothetical proteinchromosome CDS3353837 354 - 0.618644
NA CV1182 conserved hypothetical proteinchromosome CDS1244205 1272 + 0.583333
NA CV2329 conserved hypothetical proteinchromosome CDS2519757 948 + 0.647679
NA CV3163 conserved hypothetical proteinchromosome CDS3446705 621 - 0.671498
NA CV3218 probable translation initiation protein, Sua5/YciO/YrdC familychromosome CDS3498679 966 - 0.727743
NA CV2317 probable ribosomal-protein-alanine acetyltransferasechromosome CDS2509160 549 - 0.460838
NA CV1932 probable RNA methyltransferasechromosome CDS2101407 1545 - 0.64466
NA CV3799 conserved hypothetical proteinchromosome CDS4096789 483 + 0.596273
NA CV3393 conserved hypothetical proteinchromosome CDS3687554 348 - 0.66954
NA CV2406 probable pseudouridylate synthasechromosome CDS2590708 729 + 0.640604
NA CV2752 conserved hypothetical proteinchromosome CDS2988019 408 - 0.678922
NifR3 CV0544 Regulatory gene required to sense and relay the nitrogen statuschromosome CDS582495 1059 + 0.664778
alaS CV1604 alanyl-tRNA synthetasechromosome CDS1730157 2634 - 0.671982
ansA CV1687 L-asparaginase Ichromosome CDS1828489 996 + 0.697791
argS CV1962 arginyl-tRNA synthetasechromosome CDS2133825 1719 + 0.638743
aspS CV3740 aspartyl-tRNA synthetasechromosome CDS4038696 1794 - 0.638796
cafA CV0125 ribonuclease Gchromosome CDS136535 1497 + 0.654643
cca CV2032 tRNA adenylyltransferasechromosome CDS2214113 1224 - 0.691176
cysS CV1746 cysteinyl-tRNA synthetasechromosome CDS1897277 1380 + 0.657246
dbpA CV2853 ATP-dependent RNA helicase dbpAchromosome CDS3109783 1383 + 0.671005
ddhA CV3893 glucose-1-phosphate cytidylyltransferasechromosome CDS4202006 771 - 0.622568
def CV4265 Polypeptide deformylasechromosome CDS4599430 504 - 0.613095
efp CV1378 elongation factor EF-Pchromosome CDS1454130 564 - 0.585106
fmt CV4264 methionyl-tRNA formyltransferasechromosome CDS4598432 924 - 0.714286
fmt2 CV2818 methionyl-tRNA formyltransferasechromosome CDS3068462 861 - 0.665505
frr CV2199 ribosome recycling factorchromosome CDS2369992 558 + 0.589606
ftsJ CV3798 cell division protein FtsJchromosome CDS4096178 618 - 0.600324
fusA CV4189 elongation factorchromosome CDS4516809 2097 - 0.597997
gatA CV4355 Glu-tRNA(Gln) amidotransferase, subunit Achromosome CDS4695626 1452 - 0.670799
gatB CV4354 Glu-tRNA(Gln) amidotransferase, subunit Bchromosome CDS4694038 1428 - 0.641457
gatC CV4356 Glu-tRNA(Gln) amidotransferase subunit Cchromosome CDS4697160 288 - 0.621528
glnS CV1742 glutaminyl-tRNA synthetasechromosome CDS1891711 1683 + 0.641711
gltX CV1937 glutamyl-tRNA synthetasechromosome CDS2107938 1386 + 0.663059
glyQ CV1654 glycyl-tRNA synthetase, alpha chainchromosome CDS1792432 921 + 0.635179
glyS CV1656 glycyl-tRNA synthetase, beta chainchromosome CDS1793855 2061 + 0.691897
gshB CV4275 glutathione synthetase proteinchromosome CDS4608528 945 - 0.674074
hemK CV3584 HemK proteinchromosome CDS3892043 765 - 0.717647
hisS CV3537 histidyl-tRNA synthetasechromosome CDS3845151 1272 - 0.659591
hoxX CV4142 hoxX-like proteinchromosome CDS4481738 1698 - 0.702002
ileS CV3569 isoleucyl-tRNA synthetasechromosome CDS3875033 2778 - 0.655148
infA1 CV1898 translation initiation factorchromosome CDS2065091 267 - 0.629214
infA2 CV4165 translation initiation factorchromosome CDS4504654 195 - 0.548718
infB CV1462 translation initiation factor IF-2chromosome CDS1550994 2895 + 0.667703
infC CV1349 translation initiation factor IF-3chromosome CDS1422345 462 + 0.575758
ksgA CV0121 dimethyladenosine transferasechromosome CDS133592 789 - 0.661597
leuS CV0505 leucyl-tRNA synthetasechromosome CDS530163 2619 + 0.656739
ligT CV0183 2'-5' RNA ligasechromosome CDS193611 525 + 0.754286
lysS CV1060 lysyl-tRNA synthetasechromosome CDS1106914 1509 - 0.628893
map1 CV2397 methionyl aminopeptidasechromosome CDS2580217 798 - 0.611529
map2 CV2334 methionyl aminopeptidasechromosome CDS2523917 792 + 0.642677
miaA CV3389 tRNA isopentenyltransferasechromosome CDS3682719 978 + 0.696319
omlA CV1796 outer membrane lipoprotein OmlAchromosome CDS1951862 384 - 0.664062
pcnB CV1632 polynucleotide adenylyltransferasechromosome CDS1770252 1353 + 0.685883
pheS CV1352 phenylalanyl-tRNA synthetase alpha chainchromosome CDS1423670 987 + 0.641337
pnp CV1466 polyribonucleotide nucleotidyltransferasechromosome CDS1555925 2169 + 0.637621
prfA CV0080 peptide chain release factor Ichromosome CDS93658 1077 + 0.660167
prfB CV1061 peptide chain release factor RF-2chromosome CDS1108512 900 - 0.646667
prfC CV2386 peptide chain release factor RF-3chromosome CDS2567819 1611 - 0.628802
prmA CV0984 ribosomal protein L11 methyltransferasechromosome CDS1020782 897 - 0.668896
proS CV0574 prolyl-tRNA synthetasechromosome CDS613877 1707 + 0.678383
pth CV4056 aminoacyl-tRNA hydrolasechromosome CDS4387173 582 - 0.640893
queA CV0988 S-adenosylmethionine:tRNAribosyltransferase-isom erasechromosome CDS1024391 1023 + 0.658847
rbfA CV1463 ribosome-binding factor Achromosome CDS1554059 417 + 0.640288
rhlE1 CV2892 ATP-dependent RNA helicasechromosome CDS3168075 1320 + 0.681061
rhlE2 CV2841 ATP-dependent RNA helicasechromosome CDS3096390 1263 + 0.702296
rhlE3 CV0383 ATP-dependent RNA helicasechromosome CDS396849 1419 + 0.680056
rhlE4 CV1003 ATP-dependent RNA helicasechromosome CDS1042241 1326 + 0.661388
rimJ CV0166 ribosomal-protein-alanine N-acetyltransferasechromosome CDS175455 582 + 0.695876
rimM CV3674 16S rRNA processing proteinchromosome CDS3974694 510 - 0.643137
rluA CV3751 pseudouridine synthase Achromosome CDS4049113 678 - 0.656342
rluB CV4146 pseudouridylate synthasechromosome CDS4486795 702 + 0.696581
rluC CV1818 pseudouridine synthasechromosome CDS1974342 939 - 0.645367
rluD CV2192 pseudouridine synthase Dchromosome CDS2364029 1092 - 0.669414
rna CV0956 RNasechromosome CDS990690 735 + 0.647619
rnpA CV4406 ribonuclease Pchromosome CDS4750490 366 - 0.620219
rnsA CV0960 RNase I precursorchromosome CDS992906 735 + 0.512925
rph CV3847 tRNA nucleotidyltransferasechromosome CDS4152060 717 - 0.672245
rplA CV4196 50S ribosomal protein L1chromosome CDS4529870 696 - 0.614943
rplB CV4183 50S ribosomal protein L2chromosome CDS4512645 834 - 0.625899
rplC CV4186 50S ribosomal protein L3chromosome CDS4514415 645 - 0.584496
rplD CV4185 50S ribosomal protein L4chromosome CDS4513795 621 - 0.582931
rplE CV4174 50S ribosomal protein L5chromosome CDS4509003 540 - 0.564815
rplF CV4171 50S ribosomal protein L6chromosome CDS4507739 534 - 0.604869
rplI CV3637 50S ribosomal protein L9chromosome CDS3937655 450 - 0.6
rplJ CV4195 50S ribosomal protein L10chromosome CDS4529035 495 - 0.591919
rplK CV4197 50S ribosomal protein L11chromosome CDS4530567 432 - 0.597222
rplL CV4194 50S ribosomal protein L7/L12chromosome CDS4528627 372 - 0.577957
rplM CV3697 50S ribosomal protein L13chromosome CDS3995927 429 - 0.592075
rplN CV4176 50S ribosomal protein L14chromosome CDS4509878 369 - 0.542005
rplO CV4167 50S ribosomal protein L15chromosome CDS4506227 432 - 0.627315
rplP CV4179 50S ribosomal protein L16chromosome CDS4510909 417 - 0.573142
rplQ CV4159 50S ribosomal protein L17chromosome CDS4501591 396 - 0.603535
rplR CV4170 50S ribosomal protein L18chromosome CDS4507372 354 - 0.59322
rplS CV3672 50S ribosomal protein L19chromosome CDS3973555 369 - 0.612466
rplT CV1351 50S ribosomal protein L20chromosome CDS1423171 360 + 0.577778
rplU CV0848 50S ribosomal protein L21chromosome CDS880034 312 + 0.519231
rplV CV4181 50S ribosomal protein L22chromosome CDS4512021 330 - 0.548485
rplW CV4184 50S ribosomal protein L23chromosome CDS4513490 309 - 0.543689
rplX CV4175 50S ribosomal protein L24chromosome CDS4509552 315 - 0.565079
rplY CV4057 50S ribosomal protein L25chromosome CDS4387847 288 - 0.614583
rpmA CV0849 50S ribosomal protein L27chromosome CDS880358 276 + 0.586957
rpmB CV3456 50S ribosomal protein L28chromosome CDS3751893 234 - 0.57265
rpmC CV4178 50S ribosomal protein L29chromosome CDS4510721 189 - 0.539683
rpmD CV4168 50S ribosomal protein L30chromosome CDS4506662 186 - 0.521505
rpmE CV1747 50S ribosomal protein L31chromosome CDS1898765 216 + 0.532407
rpmF CV3418 50S ribosomal protein L32chromosome CDS3711499 180 - 0.594444
rpmG CV3455 50S ribosomal protein L33chromosome CDS3751703 156 - 0.525641
rpmH CV4407 ribosomal protein L34chromosome CDS4750860 135 - 0.666667
rpmI CV1350 50S ribosomal protein L35chromosome CDS1422960 198 + 0.570707
rpsA CV3046 30S ribosomal protein S1chromosome CDS3323008 1692 - 0.602246
rpsB CV2196 30S ribosomal protein S2chromosome CDS2367434 732 + 0.590164
rpsC CV4180 30S ribosomal protein S3chromosome CDS4511309 702 - 0.586895
rpsD CV4161 30S ribosomal protein S4chromosome CDS4503018 621 - 0.563607
rpsE CV4169 30s ribosomal protein S5chromosome CDS4506840 519 - 0.591522
rpsF CV3640 30S ribosomal protein S6chromosome CDS3938677 375 - 0.584
rpsG CV4190 30S ribosomal protein S7chromosome CDS4518933 471 - 0.585987
rpsH CV4172 30S ribosomal protein S8chromosome CDS4508282 396 - 0.585859
rpsI CV3696 30S ribosomal protein S9chromosome CDS3995519 393 - 0.608142
rpsJ CV4187 30S ribosomal protein S10chromosome CDS4515217 312 - 0.570513
rpsK CV4162 30S ribosomal protein S11chromosome CDS4503657 396 - 0.54798
rpsL CV4191 30S ribosomal protein S12chromosome CDS4519516 372 - 0.596774
rpsM CV4163 30S ribosomal protein S13chromosome CDS4504070 363 - 0.589532
rpsN CV4173 30S ribosomal protein S14chromosome CDS4508693 306 - 0.598039
rpsO CV1465 30s ribosomal protein S15chromosome CDS1555485 270 + 0.607407
rpsP CV3675 30S ribosomal protein S16chromosome CDS3975238 252 - 0.599206
rpsQ CV4177 30S ribosomal protein S17chromosome CDS4510456 264 - 0.545455
rpsR CV3638 30S ribosomal protein S18chromosome CDS3938126 228 - 0.548246
rpsS CV4182 30S ribosomal protein S19chromosome CDS4512360 279 - 0.541219
rpsT CV3747 30S ribosomal protein S20chromosome CDS4045505 264 - 0.609848
rpsU CV3765 30S ribosomal protein S21chromosome CDS4064385 213 - 0.591549
rsuA CV0389 pseudouridine synthase A, small subunitchromosome CDS403817 705 + 0.658156
serS CV1375 seryl-tRNA synthetasechromosome CDS1449771 1284 - 0.64486
sipD CV2617 pathogenicity island 1 effector proteinchromosome CDS2824350 1200 - 0.65
tgt CV1347 queuine tRNA-ribosyltransferasechromosome CDS1418833 1116 - 0.641577
thrS CV1348 threonyl-tRNA synthetasechromosome CDS1420344 1902 + 0.627235
trmD CV3673 tRNA (guanine-N1-)-methyltransferasechromosome CDS3973927 687 - 0.650655
trmU CV3402 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS3696513 1155 + 0.638961
trpS1 CV1697 tryptophanyl-tRNA synthetasechromosome CDS1834572 1197 + 0.654971
trpS2 CV3715 tryptophanyl-tRNA synthetasechromosome CDS4016162 1023 + 0.653959
truA CV2764 pseudouridylate synthase Achromosome CDS2999847 789 - 0.667934
truB CV1464 tRNA pseudouridine 55 synthasechromosome CDS1554472 921 + 0.661238
tsf CV2197 elongation factor EF-Tschromosome CDS2368239 867 + 0.61707
tufA CV4188 translation elongation factor Tuchromosome CDS4515546 1191 - 0.611251
tufB CV4200 translation elongation factor Tuchromosome CDS4532139 1191 - 0.61461
tyrS CV3072 tyrosine-tRNA synthetasechromosome CDS3349453 1275 + 0.638431
valS CV2669 valyl-tRNA synthetasechromosome CDS2883290 2820 - 0.638653