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2024-05-19 05:06:05

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Pseudoalteromonas haloplanktis TAC125, TAC125

Number of genes found: 186

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Pseudoalteromonas haloplanktis TAC125, TAC125
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA PSHAa0028 putative double-stranded RNA-binding protein with unique protein fold, with YrdC/RibB domainRecName: Full=Threonylcarbamoyl-AMP synthase; Short=TC-AMP synthase; EC=2.7.7.87; AltName: Full=L-threonylcarbamoyladenylate synthase; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaC; AltName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein TsaC; chromosome I CDS30853 564 + 0.416667
NA PSHAb0038 putative protein with Class I peptide chain release factor domain and peptidyl-tRNA hydrolase domainSubName: Full=Putative uncharacterized protein; chromosome II CDS43165 414 - 0.413043
NA PSHAa0974 conserved protein of unknown function ; with YjgF-like domain highly conserved in gamma-proteobacteriaSubName: Full=Uncharacterized protein; chromosome I CDS1009332 351 + 0.42735
NA PSHAa2673 putative tRNA/rRNA methyltransferase (trmH family)SubName: Full=Putative tRNA/rRNA methyltransferase (TrmH family); EC=2.1.1.-; chromosome I CDS2826655 726 - 0.429752
NA PSHAb0516 putative cold-shock RNA methyltransferaseSubName: Full=Putative cold-shock RNA methyltransferase; chromosome II CDS583326 513 + 0.432749
NA PSHAa2410 putative endoribonuclease with L-PSP DomainSubName: Full=Putative endoribonuclease with L-PSP Domain; EC=3.1.-.-; chromosome I CDS2560153 438 - 0.372146
NA PSHAa0475 putative fold recognizing lysyl-tRNARecName: Full=Elongation factor P--(R)-beta-lysine ligase; Short=EF-P--(R)-beta-lysine ligase; EC=6.3.1.-; AltName: Full=EF-P post-translational modification enzyme A; AltName: Full=EF-P-lysine lysyltransferase; chromosome I CDS492680 975 + 0.424615
NA PSHAa2552 putative protein Y involved in control of translation at low temperatureSubName: Full=Uncharacterized protein; chromosome I CDS2700678 288 + 0.364583
NA PSHAa1560 conserved protein of unknown functionSubName: Full=Uncharacterized protein; chromosome I CDS1625102 573 - 0.387435
NA PSHAa0844 conserved protein of unknown function ; putative small protein A [Precursor] (smpA)RecName: Full=Outer membrane protein assembly factor BamE; Flags: Precursor; chromosome I CDS872173 360 - 0.369444
NA PSHAb0230 putative secreted protein similar to a protein present in D. psychrophilaSubName: Full=Putative secreted protein similar to a protein present in D. psychrophila; chromosome II CDS269557 819 - 0.400488
NA PSHAa1486 conserved protein of unknown functionSubName: Full=Uncharacterized protein; chromosome I CDS1565970 444 + 0.380631
NA PSHAa0641 putative ATP-dependent RNA helicase(rhlE-like) ; DEAD-box protein familySubName: Full=Putative ATP-dependent RNA helicase(RhlE-like) DEAD-box protein family; chromosome I CDS660520 1299 + 0.437259
NA PSHAa0673 putative ribosomal subunit interface protein, similar to protein YSubName: Full=Putative ribosomal subunit interface protein, similar to protein Y; chromosome I CDS701191 357 + 0.372549
NA PSHAa0085 putative ribosomal RNA pseudouridylate synthaseRecName: Full=Pseudouridine synthase; EC=5.4.99.-; chromosome I CDS90852 690 - 0.404348
NA PSHAa1080 RNA methyltransferase, TrmH familySubName: Full=RNA methyltransferase, TrmH family; EC=2.1.1.34; chromosome I CDS1116115 774 + 0.403101
NA PSHAa0371 putative tRNA/rRNA methyltransferaseRecName: Full=tRNA (cytidine(34)-2-O)-methyltransferase; EC=2.1.1.207; AltName: Full=tRNA (cytidine/uridine-2-O-)-methyltransferase TrmL; chromosome I CDS387032 465 - 0.447312
NA PSHAa2940 putative second protein chain elongation factor EF-G, GTP-binding, may be involved in incorporation of non-canonic amino acidRecName: Full=Elongation factor G 2; Short=EF-G 2; chromosome I CDS3114870 2085 - 0.428297
NA PSHAa2466 putative orphan proteinSubName: Full=Putative orphan protein; chromosome I CDS2615717 309 + 0.401294
NA PSHAa2068 TRNA-(MS[2]IO[6]A)-hydroxylaseSubName: Full=TRNA-(MS[2]IO[6]A)-hydroxylase; EC=1.-.-.-; chromosome I CDS2188167 768 - 0.389323
NA PSHAa0443 putative RNAse with metallo-beta-lactamase-like domainSubName: Full=Putative RNAse with metallo-beta-lactamase-like domain; chromosome I CDS462542 1425 - 0.434386
NA PSHAa1577 putative ribosomal-protein-alanine acetyltransferaseSubName: Full=Putative ribosomal-protein-alanine acetyltransferase; EC=2.3.1.128; chromosome I CDS1644644 501 - 0.369261
NA PSHAa1238 ribosomal large subunit pseudouridine synthase A (Pseudouridylate synthase, 23S RNA-specific)RecName: Full=Pseudouridine synthase; EC=5.4.99.-; chromosome I CDS1287406 1713 - 0.40397
NA PSHAa1206 putative 23S rRNA pseudouridylate 746 synthaseSubName: Full=Putative 23S rRNA pseudouridylate 746 synthase; EC=4.2.1.70; chromosome I CDS1251520 714 + 0.439776
NA PSHAb0351 putative acetyltransferaseSubName: Full=Putative acetyltransferase; chromosome II CDS409879 507 + 0.351085
NA PSHAa1284 conserved protein of unknown functionSubName: Full=Uncharacterized protein; chromosome I CDS1342509 258 - 0.325581
NA PSHAa0910 putative allophanate hydrolaseSubName: Full=Putative allophanate hydrolase; EC=3.5.1.-; chromosome I CDS939889 1578 + 0.484157
NA PSHAa1657 conserved protein of unknown function ; putative 23S rRNA pseudouridylate synthase. In E.coli Pseudouridine synthases are responsible for synthesis ofRecName: Full=Pseudouridine synthase; EC=5.4.99.-; chromosome I CDS1725727 681 - 0.387665
NA PSHAa2630 Mannose-1-phosphate guanyltransferase-related proteinSubName: Full=Mannose-1-phosphate guanyltransferase-related protein; EC=2.7.7.13; chromosome I CDS2782111 654 - 0.422018
NA PSHAa0202 putative ribosome protein acetyltransferaseSubName: Full=Putative ribosome protein acetyltransferase; chromosome I CDS212751 471 + 0.380042
NA PSHAa0952 conserved protein of unknown function ; putative translation initiation factor SUI1 familySubName: Full=Uncharacterized protein; chromosome I CDS983647 330 - 0.390909
NA PSHAa2794 putative ribonuclease (endoribonuclease L-PSP)SubName: Full=Putative ribonuclease (Endoribonuclease L-PSP); chromosome I CDS2971668 393 + 0.374046
NA PSHAa0969 putative elongation factor P-like proteinRecName: Full=Elongation factor P-like protein; chromosome I CDS1002668 573 + 0.422339
NA PSHAa1377 conserved protein of unknown functionSubName: Full=Uncharacterized protein; chromosome I CDS1441693 1395 + 0.401434
NA PSHAa1764 conserved protein of unknown function ; putative endoribonuclease L-PSP domainSubName: Full=Uncharacterized protein; chromosome I CDS1849246 1266 + 0.382306
alaS PSHAa0532 alanyl-tRNA synthetaseRecName: Full=Alanine--tRNA ligase; EC=6.1.1.7; AltName: Full=Alanyl-tRNA synthetase; Short=AlaRS; chromosome I CDS546824 2607 + 0.43038
ansA PSHAa1408 L-asparaginase I(L-asparagine amidohydrolase I) (L-ASNase I)SubName: Full=L-asparaginase I(L-asparagine amidohydrolase I) (L-ASNase I); EC=3.5.1.1; chromosome I CDS1477374 1011 - 0.405539
argS PSHAa0656 arginyl-tRNA synthetaseRecName: Full=Arginine--tRNA ligase; EC=6.1.1.19; AltName: Full=Arginyl-tRNA synthetase; Short=ArgRS; chromosome I CDS682246 1743 + 0.418244
asnS PSHAa1616 asparaginyl-tRNA synthetaseRecName: Full=Asparagine--tRNA ligase; EC=6.1.1.22; AltName: Full=Asparaginyl-tRNA synthetase; Short=AsnRS; chromosome I CDS1679252 1398 + 0.435622
aspS PSHAa1938 aspartate tRNA synthetaseRecName: Full=Aspartate--tRNA ligase; EC=6.1.1.12; AltName: Full=Aspartyl-tRNA synthetase; Short=AspRS; chromosome I CDS2045628 1779 - 0.426082
cca PSHAa0625 tRNA nucleotidyl transferaseSubName: Full=tRNA nucleotidyl transferase; EC=2.7.7.25; chromosome I CDS645638 1251 + 0.433253
cysS PSHAa2065 cysteine tRNA synthetaseRecName: Full=Cysteine--tRNA ligase; EC=6.1.1.16; AltName: Full=Cysteinyl-tRNA synthetase; Short=CysRS; chromosome I CDS2185269 1380 - 0.421014
dbpA PSHAa0109 putative ATP-dependent RNA helicase; putative cold-shock protein; could be specific for rRNA foldingSubName: Full=Putative ATP-dependent RNA helicase putative cold-shock protein could be specific for rRNA folding; chromosome I CDS113841 1389 + 0.416127
deaD PSHAa0990 ATP-dependent RNA helicase, cold shock protein ARecName: Full=ATP-dependent RNA helicase DeaD; EC=3.6.4.13; AltName: Full=Cold-shock DEAD box protein A; chromosome I CDS1024855 1851 - 0.43436
def PSHAa0023 N-terminal methionine peptide deformylaseRecName: Full=Peptide deformylase; Short=PDF; EC=3.5.1.88; AltName: Full=Polypeptide deformylase; chromosome I CDS26385 504 - 0.396825
dtd PSHAa0172 D-Tyr-tRNA(Tyr) deacylase; removes other D-aminoacids from mischarged tRNARecName: Full=D-tyrosyl-tRNA(Tyr) deacylase; EC=3.1.-.-; chromosome I CDS181555 438 + 0.413242
dusA PSHAa0499 tRNA-dihydrouridine synthase ARecName: Full=tRNA-dihydrouridine synthase; EC=1.-.-.-; chromosome I CDS515246 933 + 0.429796
dusB PSHAa0347 tRNA-dihydrouridine synthase BRecName: Full=tRNA-dihydrouridine synthase; EC=1.-.-.-; chromosome I CDS359619 981 - 0.447503
dusC PSHAa1195 tRNA-dihydrouridine synthase CRecName: Full=tRNA-dihydrouridine synthase; EC=1.-.-.-; chromosome I CDS1241254 981 - 0.416921
efp PSHAa0474 elongation factor P (EF-P)RecName: Full=Elongation factor P; Short=EF-P; chromosome I CDS492054 567 + 0.40388
engD PSHAa1051 GTP-dependent nucleic acid-binding protein engDRecName: Full=Ribosome-binding ATPase YchF; chromosome I CDS1088735 1092 - 0.410256
fmt PSHAa0022 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferaseRecName: Full=Methionyl-tRNA formyltransferase; EC=2.1.2.9; chromosome I CDS25383 966 - 0.449275
frr PSHAa2033 ribosome releasing factorRecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor; chromosome I CDS2148634 522 - 0.400383
ftsJ PSHAa0869 ribosomal RNA large subunit methyltransferase J (rRNA (uridine-2'-O-)-methyltransferase) (23S rRNA m2U2552 methyltransferase) (Cell division protein fRecName: Full=Ribosomal RNA large subunit methyltransferase E; EC=2.1.1.166; AltName: Full=23S rRNA Um2552 methyltransferase; AltName: Full=rRNA (uridine-2-O-)-methyltransferase; chromosome I CDS895092 630 + 0.404762
fusA PSHAa0226 protein chain elongation factor EF-G, GTP-bindingRecName: Full=Elongation factor G 1; Short=EF-G 1; chromosome I CDS237804 2115 + 0.448227
glnS PSHAa1642 glutamine tRNA synthetaseRecName: Full=Glutamine--tRNA ligase; EC=6.1.1.18; AltName: Full=Glutaminyl-tRNA synthetase; Short=GlnRS; chromosome I CDS1708514 1659 - 0.396624
gltX PSHAa0635 Glutamyl-tRNA synthetase (Glutamate-tRNA ligase)RecName: Full=Glutamate--tRNA ligase; EC=6.1.1.17; AltName: Full=Glutamyl-tRNA synthetase; Short=GluRS; chromosome I CDS656275 1485 + 0.441751
glyQ PSHAa0005 glycyl-tRNA synthetase, alpha subunitRecName: Full=Glycine--tRNA ligase alpha subunit; EC=6.1.1.14; AltName: Full=Glycyl-tRNA synthetase alpha subunit; Short=GlyRS; chromosome I CDS6349 903 + 0.451827
glyS PSHAa0006 glycyl-tRNA synthetase, beta subunitRecName: Full=Glycine--tRNA ligase beta subunit; EC=6.1.1.14; AltName: Full=Glycyl-tRNA synthetase beta subunit; Short=GlyRS; chromosome I CDS7254 2070 + 0.423671
gshB PSHAa2599 glutathione synthetaseRecName: Full=Glutathione synthetase; EC=6.3.2.3; AltName: Full=GSH synthetase; AltName: Full=Glutathione synthase; chromosome I CDS2744825 951 + 0.414301
hisS PSHAb0137 histidine tRNA synthetaseRecName: Full=Histidine--tRNA ligase; EC=6.1.1.21; AltName: Full=Histidyl-tRNA synthetase; Short=HisRS; chromosome II CDS170009 1281 - 0.434817
hslR PSHAa0230 heat shock protein 15, DNA/RNA-bindingRecName: Full=Heat shock protein 15; chromosome I CDS244204 423 - 0.387707
ileS PSHAa0918 isoleucyl-tRNA synthetaseRecName: Full=Isoleucine--tRNA ligase; EC=6.1.1.5; AltName: Full=Isoleucyl-tRNA synthetase; Short=IleRS; chromosome I CDS946263 2829 + 0.426653
infA PSHAa1723 protein chain initiation factor IF-1RecName: Full=Translation initiation factor IF-1; chromosome I CDS1802380 219 + 0.406393
infB PSHAa0997 protein chain initiation factor IF-2RecName: Full=Translation initiation factor IF-2; chromosome I CDS1032961 2661 + 0.435926
infC PSHAa1397 protein chain initiation factor IF-3RecName: Full=Translation initiation factor IF-3; chromosome I CDS1465660 546 + 0.419414
ksgA PSHAa2635 S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase, Kasugamycin dimethyltransferaseRecName: Full=Ribosomal RNA small subunit methyltransferase A; EC=2.1.1.182; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N, N-adenosyl(rRNA) dimethyltransferase; chromosome I CDS2788487 807 + 0.401487
leuS PSHAa1031 leucyl-tRNA synthetaseRecName: Full=Leucine--tRNA ligase; EC=6.1.1.4; AltName: Full=Leucyl-tRNA synthetase; Short=LeuRS; chromosome I CDS1066323 2589 - 0.431054
lysS PSHAa0518 lysyl-tRNA synthetaseRecName: Full=Lysine--tRNA ligase; EC=6.1.1.6; AltName: Full=Lysyl-tRNA synthetase; chromosome I CDS532684 1536 + 0.422526
map PSHAa2037 methionine aminopeptidase; contains a divalent metal, usually cobaltRecName: Full=Methionine aminopeptidase; Short=MAP; Short=MetAP; EC=3.4.11.18; AltName: Full=Peptidase M; chromosome I CDS2152068 786 + 0.413486
miaA PSHAa0270 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferaseRecName: Full=tRNA dimethylallyltransferase; EC=2.5.1.75; AltName: Full=Dimethylallyl diphosphate:tRNA dimethylallyltransferase; Short=DMAPP:tRNA dimethylallyltransferase; Short=DMATase; AltName: Full=Isopentenyl-diphosphate:tRNA isopentenyltransferase; Short=IPP transferase; Short=IPPT; Short=IPTase; chromosome I CDS284086 921 + 0.408252
miaB PSHAa1046 involved in methylthiolation of isopentenylated A37 derivatives in tRNA, Fe-S proteinRecName: Full=tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; EC=2.8.4.3; AltName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase; chromosome I CDS1084026 1410 - 0.42766
mnmA PSHAa1690 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferaseRecName: Full=tRNA-specific 2-thiouridylase MnmA; EC=2.8.1.-; chromosome I CDS1766698 1101 + 0.426885
pcnB PSHAa0604 poly(A) polymerase IRecName: Full=Poly(A) polymerase I; Short=PAP I; EC=2.7.7.19; chromosome I CDS629914 1299 - 0.431101
pheS PSHAa1904 phenylalanine tRNA synthetase, alpha-subunitRecName: Full=Phenylalanine--tRNA ligase alpha subunit; EC=6.1.1.20; AltName: Full=Phenylalanyl-tRNA synthetase alpha subunit; chromosome I CDS2010729 906 - 0.42936
pnp PSHAa1001 polynucleotide phosphorylase, has polyadenylase activity; part of the degradosomeRecName: Full=Polyribonucleotide nucleotidyltransferase; EC=2.7.7.8; AltName: Full=Polynucleotide phosphorylase; Short=PNPase; chromosome I CDS1037949 2127 + 0.428303
prfA PSHAa1058 Peptide chain release factor 1 (RF-1)RecName: Full=Peptide chain release factor 1; Short=RF-1; chromosome I CDS1095093 1086 + 0.438306
prfB PSHAa0517 peptide chain release factor 2 (RF-2)RecName: Full=Peptide chain release factor 2; Short=RF-2; chromosome I CDS531558 1098 + 0.442623
prfC PSHAa0655 peptide chain release factor RF-3; GTP-binding factorRecName: Full=Peptide chain release factor 3; Short=RF-3; chromosome I CDS680599 1590 + 0.433333
prmA PSHAa0348 methylation of 50S ribosomal subunit protein L11 (ribosomal protein L11 methyltransferase)RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11 Mtase; EC=2.1.1.-; chromosome I CDS360871 882 - 0.428571
prmB PSHAa0982 putative 50S subunit L3 protein glutamine methyltransferaseRecName: Full=50S ribosomal protein L3 glutamine methyltransferase; Short=L3 MTase; EC=2.1.1.298; AltName: Full=N5-glutamine methyltransferase PrmB; chromosome I CDS1017057 936 + 0.431624
prmC PSHAa1059 N5-glutamine methyltransferase, modifies release factors RF-1 and RF-2RecName: Full=Release factor glutamine methyltransferase; Short=RF MTase; EC=2.1.1.297; AltName: Full=N5-glutamine methyltransferase PrmC; AltName: Full=Protein-(glutamine-N5) MTase PrmC; AltName: Full=Protein-glutamine N-methyltransferase PrmC; chromosome I CDS1096184 840 + 0.428571
proS PSHAa1623 prolyl-tRNA synthetaseRecName: Full=Proline--tRNA ligase; EC=6.1.1.15; AltName: Full=Prolyl-tRNA synthetase; Short=ProRS; chromosome I CDS1687203 1635 + 0.423853
pth PSHAa1052 peptidyl-tRNA hydrolaseRecName: Full=Peptidyl-tRNA hydrolase; Short=PTH; EC=3.1.1.29; chromosome I CDS1089879 585 - 0.425641
queA PSHAa0318 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (Queuosine biosynthesis protein )RecName: Full=S-adenosylmethionine:tRNA ribosyltransferase-isomerase; EC=2.4.99.17; AltName: Full=Queuosine biosynthesis protein QueA; chromosome I CDS333540 1032 + 0.443798
queB PSHAa0605 putative glutamyl-Q tRNA(Asp) synthetaseRecName: Full=Glutamyl-Q tRNA(Asp) synthetase; Short=Glu-Q-RSs; EC=6.1.1.-; chromosome I CDS631529 897 - 0.42029
rbfA PSHAa0998 ribosome-binding factor A, role in processing of 16S rRNARecName: Full=Ribosome-binding factor A; chromosome I CDS1035731 501 + 0.39521
rhlB PSHAa0114 ATP-dependent RNA helicase with nucleoside triP hydrolase domain, putative cold-shock proteinRecName: Full=ATP-dependent RNA helicase RhlB; EC=3.6.4.13; chromosome I CDS120724 1263 + 0.4038
rhlE PSHAa1930 putative ATP-dependent RNA helicase with P-loop hydrolase domainRecName: Full=ATP-dependent RNA helicase RhlE; EC=3.6.4.13; chromosome I CDS2039821 1401 - 0.441114
rhlE PSHAb0411 putative ATP-dependent RNA helicase with P-loop hydrolase domain; DEAD-box protein familySubName: Full=Putative ATP-dependent RNA helicase with P-loop hydrolase domain DEAD-box protein family; chromosome II CDS467541 1302 + 0.417051
rhlE PSHAa2983 DEAD-box protein family; putative ATP-dependent RNA helicase with P-loop hydrolase domainSubName: Full=DEAD-box protein family putative ATP-dependent RNA helicase with P-loop hydrolase domain; chromosome I CDS3170170 1305 - 0.419157
rimK PSHAa2577 ribosomal protein S6 modification proteinRecName: Full=Probable alpha-L-glutamate ligase; EC=6.3.2.-; chromosome I CDS2723323 906 - 0.432671
rimM PSHAa0945 16S rRNA processing proteinRecName: Full=Ribosome maturation factor RimM; chromosome I CDS974271 537 + 0.445065
rlmB PSHAa2479 Gm2251 methyltransferase of 23S rRNARecName: Full=23S rRNA (guanosine-2-O-)-methyltransferase RlmB; EC=2.1.1.185; AltName: Full=23S rRNA (guanosine2251 2-O)-methyltransferase; AltName: Full=23S rRNA Gm2251 2-O-methyltransferase; chromosome I CDS2629945 744 - 0.442204
rluA PSHAa2627 pseudouridylate synthase for 23S rRNA (position 746) and tRNAphe(position 32), dual specificitySubName: Full=Pseudouridylate synthase for 23S rRNA (Position 746) and tRNAphe(Position 32), dual specificity; EC=4.2.1.70; chromosome I CDS2779449 702 + 0.472934
rluB PSHAa1342 pseudouridine synthase (makes pseudouridine2605 in 23 S RNA)RecName: Full=Pseudouridine synthase; EC=5.4.99.-; chromosome I CDS1389476 873 + 0.419244
rluC PSHAb0436 putative ribosomal RNA pseudouridine synthaseRecName: Full=Pseudouridine synthase; EC=5.4.99.-; chromosome II CDS494462 984 + 0.372967
rluC PSHAa1815 23S rRNA pseudouridylate synthase, in E. coli modifies positions 955, 2504, and 2580 in 23 S ribosomal RNARecName: Full=Pseudouridine synthase; EC=5.4.99.-; chromosome I CDS1902342 960 - 0.410417
rluD PSHAa0933 pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)RecName: Full=Pseudouridine synthase; EC=5.4.99.-; chromosome I CDS961171 978 + 0.43047
rluE PSHAa1688 ribosomal large subunit pseudouridine synthase E (Pseudouridylate synthase) (Uracil hydrolyase)RecName: Full=Pseudouridine synthase; EC=5.4.99.-; chromosome I CDS1764379 684 + 0.415205
rmf PSHAa1490 ribosome modulation factorRecName: Full=Ribosome modulation factor; Short=RMF; chromosome I CDS1569068 171 + 0.380117
rnd PSHAb0503 putative RNase D, processing tRNA precursorsRecName: Full=Ribonuclease D; Short=RNase D; EC=3.1.13.5; chromosome II CDS568869 1131 + 0.365164
rne PSHAa1816 RNase E: endoribonuclease for rRNA processing and mRNA degradation; member of the degradosome; involved in the production of deoxyribonucleotides viaRecName: Full=Ribonuclease E; Short=RNase E; EC=3.1.26.12; chromosome I CDS1904072 3216 + 0.439988
rng PSHAa2678 RNase G (ribonuclease G)SubName: Full=RNase G (Ribonuclease G); EC=3.1.4.-; chromosome I CDS2833764 1473 - 0.413442
rnpA PSHAa3025 Ribonuclease P protein component (RNaseP protein) (RNase P protein) (Protein C5)RecName: Full=Ribonuclease P protein component; Short=RNase P protein; Short=RNaseP protein; EC=3.1.26.5; AltName: Full=Protein C5; chromosome I CDS3214022 423 - 0.397163
rph PSHAa2788 RNase PH (tRNA nucleotidyltransferase)RecName: Full=Ribonuclease PH; Short=RNase PH; EC=2.7.7.56; AltName: Full=tRNA nucleotidyltransferase; chromosome I CDS2966543 714 - 0.434174
rplA PSHAa0219 50S ribosomal subunit protein L1RecName: Full=50S ribosomal protein L1; chromosome I CDS226109 705 + 0.428369
rplB PSHAa0147 50S ribosomal protein L2RecName: Full=50S ribosomal protein L2; chromosome I CDS158157 825 + 0.452121
rplC PSHAa0144 50S ribosomal subunit protein L3RecName: Full=50S ribosomal protein L3; chromosome I CDS156584 636 + 0.455975
rplD PSHAa0145 50S ribosomal subunit protein L4RecName: Full=50S ribosomal protein L4; chromosome I CDS157237 606 + 0.432343
rplE PSHAa2818 50S ribosomal subunit protein L5RecName: Full=50S ribosomal protein L5; chromosome I CDS2992167 540 - 0.444444
rplF PSHAa2815 50S ribosomal subunit protein L6RecName: Full=50S ribosomal protein L6; chromosome I CDS2990890 534 - 0.423221
rplI PSHAa2439 50S ribosomal subunit protein L9RecName: Full=50S ribosomal protein L9; chromosome I CDS2588854 453 - 0.430464
rplJ PSHAa0220 50S ribosomal protein L10RecName: Full=50S ribosomal protein L10; chromosome I CDS227136 495 + 0.432323
rplK PSHAa0218 50S ribosomal subunit protein L11RecName: Full=50S ribosomal protein L11; chromosome I CDS225676 429 + 0.459207
rplL PSHAa0221 50S ribosomal subunit protein L7/L12RecName: Full=50S ribosomal protein L7/L12; chromosome I CDS227705 363 + 0.443526
rplM PSHAa2532 50S ribosomal subunit protein L13RecName: Full=50S ribosomal protein L13; chromosome I CDS2684457 429 - 0.407925
rplN PSHAa2820 50S ribosomal subunit protein L14RecName: Full=50S ribosomal protein L14; chromosome I CDS2993048 369 - 0.444444
rplO PSHAa2811 50S ribosomal subunit protein L15RecName: Full=50S ribosomal protein L15; chromosome I CDS2989390 435 - 0.45977
rplP PSHAa0151 50S ribosomal subunit protein L16RecName: Full=50S ribosomal protein L16; chromosome I CDS160348 414 + 0.461353
rplQ PSHAa2805 50S ribosomal protein L17RecName: Full=50S ribosomal protein L17; chromosome I CDS2984941 402 - 0.445274
rplR PSHAa2814 50S ribosomal subunit protein L18RecName: Full=50S ribosomal protein L18; chromosome I CDS2990530 351 - 0.481481
rplS PSHAa0947 50S ribosomal subunit protein L19RecName: Full=50S ribosomal protein L19; chromosome I CDS975608 360 + 0.427778
rplT PSHAa1399 50S ribosomal subunit protein L20, also posttranslational autoregulatorRecName: Full=50S ribosomal protein L20; chromosome I CDS1466634 363 + 0.446281
rplU PSHAa2656 50S ribosomal subunit protein L21RecName: Full=50S ribosomal protein L21; chromosome I CDS2810570 312 - 0.419872
rplV PSHAa0149 50S ribosomal subunit protein L22RecName: Full=50S ribosomal protein L22; chromosome I CDS159289 333 + 0.462462
rplW PSHAa0146 50S ribosomal subunit protein L23RecName: Full=50S ribosomal protein L23; chromosome I CDS157839 303 + 0.405941
rplX PSHAa2819 50S ribosomal subunit protein L24RecName: Full=50S ribosomal protein L24; chromosome I CDS2992723 315 - 0.4
rplY PSHAa1053 50S ribosomal protein L25RecName: Full=50S ribosomal protein L25; AltName: Full=General stress protein CTC; chromosome I CDS1090482 615 - 0.396748
rpmA PSHAa2655 50S ribosomal subunit protein L27RecName: Full=50S ribosomal protein L27; chromosome I CDS2810296 258 - 0.437984
rpmB PSHAa2642 50S ribosomal subunit protein L28RecName: Full=50S ribosomal protein L28; chromosome I CDS2793792 288 - 0.416667
rpmC PSHAa0152 50S ribosomal subunit protein L29RecName: Full=50S ribosomal protein L29; chromosome I CDS160761 192 + 0.421875
rpmD PSHAa2812 50S ribosomal subunit protein L30RecName: Full=50S ribosomal protein L30; chromosome I CDS2989829 183 - 0.393443
rpmE PSHAa2726 50S ribosomal subunit protein L31RecName: Full=50S ribosomal protein L31; chromosome I CDS2892535 216 - 0.402778
rpmF PSHAa1811 50S ribosomal subunit protein L32RecName: Full=50S ribosomal protein L32; chromosome I CDS1900236 171 - 0.450292
rpmG PSHAa2641 50S ribosomal subunit protein L33RecName: Full=50S ribosomal protein L33; chromosome I CDS2793625 156 - 0.346154
rpmH PSHAa3026 50S ribosomal subunit protein L34RecName: Full=50S ribosomal protein L34; chromosome I CDS3214452 135 - 0.451852
rpmI PSHAa1398 50S ribosomal subunit protein ARecName: Full=50S ribosomal protein L35; chromosome I CDS1466418 201 + 0.40796
rpmJ PSHAb0382 50S ribosomal protein L36 (Ribosomal protein B)RecName: Full=50S ribosomal protein L36; chromosome II CDS447113 135 - 0.407407
rpsA PSHAa1425 30S ribosomal subunit protein S1; site specific RNA helicase; component of the degradosomeRecName: Full=30S ribosomal protein S1; chromosome I CDS1500347 1668 + 0.419664
rpsB PSHAa2036 30S ribosomal subunit protein S2RecName: Full=30S ribosomal protein S2; chromosome I CDS2151068 729 - 0.444444
rpsC PSHAa0150 30S ribosomal subunit protein S3RecName: Full=30S ribosomal protein S3; chromosome I CDS159634 702 + 0.440171
rpsD PSHAa2807 30S ribosomal subunit protein S4RecName: Full=30S ribosomal protein S4; chromosome I CDS2986393 621 - 0.431562
rpsE PSHAa2813 30S ribosomal subunit protein S5RecName: Full=30S ribosomal protein S5; chromosome I CDS2990014 507 - 0.441815
rpsF PSHAa2443 30S ribosomal subunit protein S6RecName: Full=30S ribosomal protein S6; chromosome I CDS2589945 342 - 0.44152
rpsG PSHAa0225 30S ribosomal subunit protein S7RecName: Full=30S ribosomal protein S7; chromosome I CDS237306 471 + 0.44586
rpsH PSHAa2816 30S ribosomal subunit protein S8RecName: Full=30S ribosomal protein S8; chromosome I CDS2991437 393 - 0.422392
rpsI PSHAa2531 30S ribosomal subunit protein S9RecName: Full=30S ribosomal protein S9; chromosome I CDS2684056 390 - 0.448718
rpsJ PSHAa0143 30S ribosomal subunit protein S10 (NusE protein)RecName: Full=30S ribosomal protein S10; chromosome I CDS156245 312 + 0.461538
rpsK PSHAa2808 30S ribosomal subunit protein S11RecName: Full=30S ribosomal protein S11; chromosome I CDS2987035 387 - 0.447028
rpsL PSHAa0224 30S ribosomal protein S12RecName: Full=30S ribosomal protein S12; chromosome I CDS236833 375 + 0.464
rpsM PSHAa2809 30S ribosomal subunit protein S13RecName: Full=30S ribosomal protein S13; chromosome I CDS2987434 357 - 0.462185
rpsN PSHAa2817 30S ribosomal subunit protein S14RecName: Full=30S ribosomal protein S14; chromosome I CDS2991851 306 - 0.464052
rpsO PSHAa1000 30S ribosomal subunit protein S15RecName: Full=30S ribosomal protein S15; chromosome I CDS1037329 270 + 0.411111
rpsP PSHAa0944 30S ribosomal subunit protein S16RecName: Full=30S ribosomal protein S16; chromosome I CDS974005 249 + 0.453815
rpsQ PSHAa0153 30S ribosomal subunit protein S17RecName: Full=30S ribosomal protein S17; chromosome I CDS160952 258 + 0.395349
rpsR PSHAa2440 30S ribosomal subunit protein S18RecName: Full=30S ribosomal protein S18; chromosome I CDS2589343 228 - 0.429825
rpsS PSHAa0148 30S ribosomal protein S19RecName: Full=30S ribosomal protein S19; chromosome I CDS158985 291 + 0.457045
rpsT PSHAa0914 30S ribosomal subunit protein S20RecName: Full=30S ribosomal protein S20; chromosome I CDS943127 261 - 0.40613
rpsU PSHAa0352 30S ribosomal subunit protein S21RecName: Full=30S ribosomal protein S21; chromosome I CDS366251 216 - 0.421296
rsmB PSHAa0021 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependentSubName: Full=16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent; EC=2.1.1.-; chromosome I CDS24095 1296 - 0.426698
rsmC PSHAa0552 putative ribosomal RNA small subunit methyltransferase CRecName: Full=Ribosomal RNA small subunit methyltransferase C; EC=2.1.1.172; AltName: Full=16S rRNA m2G1207 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase RsmC; chromosome I CDS567820 1026 - 0.377193
rsmD PSHAa2245 Putative ribosomal RNA small subunit methyltransferase D (rRNA (guanine-N(2)-)-methyltransferase) (16S rRNA m2G966 methyltransferase)RecName: Full=Ribosomal RNA large subunit methyltransferase G; EC=2.1.1.174; AltName: Full=23S rRNA m2G1835 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase RlmG; chromosome I CDS2383789 1149 + 0.396867
rsuA PSHAa0467 16S rRNA pseudouridylate 516 synthaseRecName: Full=Pseudouridine synthase; EC=5.4.99.-; chromosome I CDS486414 699 - 0.41774
rumA PSHAa0738 23S rRNA (uracil-5)-methyltransferase, responsible for modification at position U1939, SAM-dependentRecName: Full=23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD; EC=2.1.1.190; AltName: Full=23S rRNA(m5U1939)-methyltransferase; chromosome I CDS771004 1326 + 0.386878
serS PSHAa1712 serine tRNA synthetaseRecName: Full=Serine--tRNA ligase; EC=6.1.1.11; AltName: Full=Seryl-tRNA synthetase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec) synthetase; chromosome I CDS1790014 1305 - 0.456705
srmB PSHAa1432 ATP-dependent RNA helicase, DEAD box familySubName: Full=ATP-dependent RNA helicase, DEAD box family; EC=2.7.7.-; chromosome I CDS1505925 1323 - 0.406652
srmB PSHAa0510 ATP-dependent RNA helicaseRecName: Full=ATP-dependent RNA helicase SrmB; EC=3.6.4.13; chromosome I CDS524696 1227 - 0.414833
tadA PSHAa2333 tRNA-specific adenosine deaminaseRecName: Full=tRNA-specific adenosine deaminase; EC=3.5.4.33; chromosome I CDS2477274 507 - 0.424063
tgt PSHAa0319 Queuine tRNA-ribosyltransferase(tRNA-guanine transglycosylase)(Guanine insertion enzyme)RecName: Full=Queuine tRNA-ribosyltransferase; EC=2.4.2.29; AltName: Full=Guanine insertion enzyme; AltName: Full=tRNA-guanine transglycosylase; chromosome I CDS334722 1128 + 0.430851
thrS PSHAa1396 threonyl-tRNA synthetaseRecName: Full=Threonine--tRNA ligase; EC=6.1.1.3; AltName: Full=Threonyl-tRNA synthetase; chromosome I CDS1463673 1911 + 0.411826
trmA PSHAa0250 tRNA (Uracil-5-)-methyltransferase (tRNA(M-5-U54)-methyltransferase) (RUMT)RecName: Full=tRNA/tmRNA (uracil-C(5))-methyltransferase; EC=2.1.1.-; EC=2.1.1.35; AltName: Full=tRNA (uracil(54)-C(5))-methyltransferase; AltName: Full=tRNA(m5U54)-methyltransferase; Short=RUMT; AltName: Full=tmRNA (uracil(341)-C(5))-methyltransferase; chromosome I CDS261601 1104 - 0.391304
trmD PSHAa0946 tRNA (guanine-7-)-methyltransferaseRecName: Full=tRNA (guanine-N(1)-)-methyltransferase; EC=2.1.1.228; AltName: Full=M1G-methyltransferase; AltName: Full=tRNA [GM37] methyltransferase; chromosome I CDS974807 768 + 0.454427
trmH PSHAa2798 putative tRNA methyltransferase (tRNA mG18-2'-O-methyltransferase)SubName: Full=Putative tRNA methyltransferase (TRNA mG18-2-O-methyltransferase); EC=2.1.1.34; chromosome I CDS2975610 687 + 0.422125
trpS PSHAa2708 tryptophanyl-tRNA synthetaseRecName: Full=Tryptophan--tRNA ligase; EC=6.1.1.2; AltName: Full=Tryptophanyl-tRNA synthetase; chromosome I CDS2871636 1005 - 0.420896
truA PSHAa2075 tRNA pseudouridylate synthase IRecName: Full=tRNA pseudouridine synthase A; EC=5.4.99.12; AltName: Full=tRNA pseudouridine(38-40) synthase; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I; chromosome I CDS2195048 795 - 0.407547
truB PSHAa0999 tRNA pseudouridine 5S synthaseRecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.25; AltName: Full=tRNA pseudouridine(55) synthase; Short=Psi55 synthase; AltName: Full=tRNA pseudouridylate synthase; AltName: Full=tRNA-uridine isomerase; chromosome I CDS1036215 960 + 0.41875
truC PSHAa1970 tRNA pseudouridine synthase CRecName: Full=Pseudouridine synthase; EC=5.4.99.-; chromosome I CDS2073976 765 - 0.419608
tsf PSHAa2035 protein chain elongation factor EF-TsRecName: Full=Elongation factor Ts; Short=EF-Ts; chromosome I CDS2150113 852 - 0.420188
tufA PSHAa0227 protein chain elongation factor EF-Tu; GTP-binding factorRecName: Full=Elongation factor Tu 1; Short=EF-Tu 1; chromosome I CDS239981 1185 + 0.450633
tufB PSHAa2911 protein chain elongation factor EF-Tu; possible GTP-binding factor (duplicate of tufA)RecName: Full=Elongation factor Tu 2; Short=EF-Tu 2; chromosome I CDS3079383 1185 - 0.448945
tyrS PSHAa2413 tyrosine tRNA synthetaseRecName: Full=Tyrosine--tRNA ligase 1; EC=6.1.1.1; AltName: Full=Tyrosyl-tRNA synthetase 1; Short=TyrRS 1; chromosome I CDS2561452 1263 - 0.420428
tyrZ PSHAa0545 Tyrosyl-tRNA synthetase IIRecName: Full=Tyrosine--tRNA ligase 2; EC=6.1.1.1; AltName: Full=Tyrosyl-tRNA synthetase 2; Short=TyrRS 2; chromosome I CDS559119 1200 + 0.4075
valS PSHAa2425 valine tRNA synthetaseRecName: Full=Valine--tRNA ligase; EC=6.1.1.9; AltName: Full=Valyl-tRNA synthetase; Short=ValRS; chromosome I CDS2575334 2856 + 0.436625
yciO PSHAa1295 putative RNA binding protein with YrdC/RibB domainSubName: Full=Putative RNA binding protein with YrdC/RibB domain; chromosome I CDS1353352 621 + 0.386473
yhbY PSHAa0868 RNA binding protein; ancient RNA-binding IF3-C foldSubName: Full=RNA binding protein ancient RNA-binding IF3-C fold; chromosome I CDS894707 297 - 0.37037