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2024-05-03 21:09:45

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Pseudoalteromonas haloplanktis TAC125, TAC125

Number of genes found: 186

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Pseudoalteromonas haloplanktis TAC125, TAC125
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA PSHAa0673 putative ribosomal subunit interface protein, similar to protein Ychromosome I CDS701191 357 + 0.372549
NA PSHAa1206 putative 23S rRNA pseudouridylate 746 synthasechromosome I CDS1251520 714 + 0.439776
NA PSHAa1377 conserved protein of unknown functionchromosome I CDS1441693 1395 + 0.401434
NA PSHAa1577 putative ribosomal-protein-alanine acetyltransferasechromosome I CDS1644644 501 - 0.369261
NA PSHAa2794 putative ribonuclease (endoribonuclease L-PSP)chromosome I CDS2971668 393 + 0.374046
NA PSHAa2068 TRNA-(MS[2]IO[6]A)-hydroxylasechromosome I CDS2188167 768 - 0.389323
NA PSHAa1080 RNA methyltransferase, TrmH familychromosome I CDS1116115 774 + 0.403101
NA PSHAa1657 conserved protein of unknown function ; putative 23S rRNA pseudouridylate synthase. In E.coli Pseudouridine synthases are responsible for synthesis ofchromosome I CDS1725727 681 - 0.387665
NA PSHAa2466 putative orphan proteinchromosome I CDS2615717 309 + 0.401294
NA PSHAa0641 putative ATP-dependent RNA helicase(rhlE-like) ; DEAD-box protein familychromosome I CDS660520 1299 + 0.437259
NA PSHAb0230 putative secreted protein similar to a protein present in D. psychrophilachromosome II CDS269557 819 - 0.400488
NA PSHAa2673 putative tRNA/rRNA methyltransferase (trmH family)chromosome I CDS2826655 726 - 0.429752
NA PSHAa1238 ribosomal large subunit pseudouridine synthase A (Pseudouridylate synthase, 23S RNA-specific)chromosome I CDS1287406 1713 - 0.40397
NA PSHAa2940 putative second protein chain elongation factor EF-G, GTP-binding, may be involved in incorporation of non-canonic amino acidchromosome I CDS3114870 2085 - 0.428297
NA PSHAa2410 putative endoribonuclease with L-PSP Domainchromosome I CDS2560153 438 - 0.372146
NA PSHAa0844 conserved protein of unknown function ; putative small protein A [Precursor] (smpA)chromosome I CDS872173 360 - 0.369444
NA PSHAa0475 putative fold recognizing lysyl-tRNAchromosome I CDS492680 975 + 0.424615
NA PSHAb0516 putative cold-shock RNA methyltransferasechromosome II CDS583326 513 + 0.432749
NA PSHAb0038 putative protein with Class I peptide chain release factor domain and peptidyl-tRNA hydrolase domainchromosome II CDS43165 414 - 0.413043
NA PSHAa0202 putative ribosome protein acetyltransferasechromosome I CDS212751 471 + 0.380042
NA PSHAa0952 conserved protein of unknown function ; putative translation initiation factor SUI1 familychromosome I CDS983647 330 - 0.390909
NA PSHAa0974 conserved protein of unknown function ; with YjgF-like domain highly conserved in gamma-proteobacteriachromosome I CDS1009332 351 + 0.42735
NA PSHAa2552 putative protein Y involved in control of translation at low temperaturechromosome I CDS2700678 288 + 0.364583
NA PSHAb0351 putative acetyltransferasechromosome II CDS409879 507 + 0.351085
NA PSHAa0028 putative double-stranded RNA-binding protein with unique protein fold, with YrdC/RibB domainchromosome I CDS30853 564 + 0.416667
NA PSHAa1284 conserved protein of unknown functionchromosome I CDS1342509 258 - 0.325581
NA PSHAa2630 Mannose-1-phosphate guanyltransferase-related proteinchromosome I CDS2782111 654 - 0.422018
NA PSHAa0910 putative allophanate hydrolasechromosome I CDS939889 1578 + 0.484157
NA PSHAa0443 putative RNAse with metallo-beta-lactamase-like domainchromosome I CDS462542 1425 - 0.434386
NA PSHAa1764 conserved protein of unknown function ; putative endoribonuclease L-PSP domainchromosome I CDS1849246 1266 + 0.382306
NA PSHAa1486 conserved protein of unknown functionchromosome I CDS1565970 444 + 0.380631
NA PSHAa0969 putative elongation factor P-like proteinchromosome I CDS1002668 573 + 0.422339
NA PSHAa0085 putative ribosomal RNA pseudouridylate synthasechromosome I CDS90852 690 - 0.404348
NA PSHAa0371 putative tRNA/rRNA methyltransferasechromosome I CDS387032 465 - 0.447312
NA PSHAa1560 conserved protein of unknown functionchromosome I CDS1625102 573 - 0.387435
alaS PSHAa0532 alanyl-tRNA synthetasechromosome I CDS546824 2607 + 0.43038
ansA PSHAa1408 L-asparaginase I(L-asparagine amidohydrolase I) (L-ASNase I)chromosome I CDS1477374 1011 - 0.405539
argS PSHAa0656 arginyl-tRNA synthetasechromosome I CDS682246 1743 + 0.418244
asnS PSHAa1616 asparaginyl-tRNA synthetasechromosome I CDS1679252 1398 + 0.435622
aspS PSHAa1938 aspartate tRNA synthetasechromosome I CDS2045628 1779 - 0.426082
cca PSHAa0625 tRNA nucleotidyl transferasechromosome I CDS645638 1251 + 0.433253
cysS PSHAa2065 cysteine tRNA synthetasechromosome I CDS2185269 1380 - 0.421014
dbpA PSHAa0109 putative ATP-dependent RNA helicase; putative cold-shock protein; could be specific for rRNA foldingchromosome I CDS113841 1389 + 0.416127
deaD PSHAa0990 ATP-dependent RNA helicase, cold shock protein Achromosome I CDS1024855 1851 - 0.43436
def PSHAa0023 N-terminal methionine peptide deformylasechromosome I CDS26385 504 - 0.396825
dtd PSHAa0172 D-Tyr-tRNA(Tyr) deacylase; removes other D-aminoacids from mischarged tRNAchromosome I CDS181555 438 + 0.413242
dusA PSHAa0499 tRNA-dihydrouridine synthase Achromosome I CDS515246 933 + 0.429796
dusB PSHAa0347 tRNA-dihydrouridine synthase Bchromosome I CDS359619 981 - 0.447503
dusC PSHAa1195 tRNA-dihydrouridine synthase Cchromosome I CDS1241254 981 - 0.416921
efp PSHAa0474 elongation factor P (EF-P)chromosome I CDS492054 567 + 0.40388
engD PSHAa1051 GTP-dependent nucleic acid-binding protein engDchromosome I CDS1088735 1092 - 0.410256
fmt PSHAa0022 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferasechromosome I CDS25383 966 - 0.449275
frr PSHAa2033 ribosome releasing factorchromosome I CDS2148634 522 - 0.400383
ftsJ PSHAa0869 ribosomal RNA large subunit methyltransferase J (rRNA (uridine-2'-O-)-methyltransferase) (23S rRNA m2U2552 methyltransferase) (Cell division protein fchromosome I CDS895092 630 + 0.404762
fusA PSHAa0226 protein chain elongation factor EF-G, GTP-bindingchromosome I CDS237804 2115 + 0.448227
glnS PSHAa1642 glutamine tRNA synthetasechromosome I CDS1708514 1659 - 0.396624
gltX PSHAa0635 Glutamyl-tRNA synthetase (Glutamate-tRNA ligase)chromosome I CDS656275 1485 + 0.441751
glyQ PSHAa0005 glycyl-tRNA synthetase, alpha subunitchromosome I CDS6349 903 + 0.451827
glyS PSHAa0006 glycyl-tRNA synthetase, beta subunitchromosome I CDS7254 2070 + 0.423671
gshB PSHAa2599 glutathione synthetasechromosome I CDS2744825 951 + 0.414301
hisS PSHAb0137 histidine tRNA synthetasechromosome II CDS170009 1281 - 0.434817
hslR PSHAa0230 heat shock protein 15, DNA/RNA-bindingchromosome I CDS244204 423 - 0.387707
ileS PSHAa0918 isoleucyl-tRNA synthetasechromosome I CDS946263 2829 + 0.426653
infA PSHAa1723 protein chain initiation factor IF-1chromosome I CDS1802380 219 + 0.406393
infB PSHAa0997 protein chain initiation factor IF-2chromosome I CDS1032961 2661 + 0.435926
infC PSHAa1397 protein chain initiation factor IF-3chromosome I CDS1465660 546 + 0.419414
ksgA PSHAa2635 S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase, Kasugamycin dimethyltransferasechromosome I CDS2788487 807 + 0.401487
leuS PSHAa1031 leucyl-tRNA synthetasechromosome I CDS1066323 2589 - 0.431054
lysS PSHAa0518 lysyl-tRNA synthetasechromosome I CDS532684 1536 + 0.422526
map PSHAa2037 methionine aminopeptidase; contains a divalent metal, usually cobaltchromosome I CDS2152068 786 + 0.413486
miaA PSHAa0270 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferasechromosome I CDS284086 921 + 0.408252
miaB PSHAa1046 involved in methylthiolation of isopentenylated A37 derivatives in tRNA, Fe-S proteinchromosome I CDS1084026 1410 - 0.42766
mnmA PSHAa1690 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome I CDS1766698 1101 + 0.426885
pcnB PSHAa0604 poly(A) polymerase Ichromosome I CDS629914 1299 - 0.431101
pheS PSHAa1904 phenylalanine tRNA synthetase, alpha-subunitchromosome I CDS2010729 906 - 0.42936
pnp PSHAa1001 polynucleotide phosphorylase, has polyadenylase activity; part of the degradosomechromosome I CDS1037949 2127 + 0.428303
prfA PSHAa1058 Peptide chain release factor 1 (RF-1)chromosome I CDS1095093 1086 + 0.438306
prfB PSHAa0517 peptide chain release factor 2 (RF-2)chromosome I CDS531558 1098 + 0.442623
prfC PSHAa0655 peptide chain release factor RF-3; GTP-binding factorchromosome I CDS680599 1590 + 0.433333
prmA PSHAa0348 methylation of 50S ribosomal subunit protein L11 (ribosomal protein L11 methyltransferase)chromosome I CDS360871 882 - 0.428571
prmB PSHAa0982 putative 50S subunit L3 protein glutamine methyltransferasechromosome I CDS1017057 936 + 0.431624
prmC PSHAa1059 N5-glutamine methyltransferase, modifies release factors RF-1 and RF-2chromosome I CDS1096184 840 + 0.428571
proS PSHAa1623 prolyl-tRNA synthetasechromosome I CDS1687203 1635 + 0.423853
pth PSHAa1052 peptidyl-tRNA hydrolasechromosome I CDS1089879 585 - 0.425641
queA PSHAa0318 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (Queuosine biosynthesis protein )chromosome I CDS333540 1032 + 0.443798
queB PSHAa0605 putative glutamyl-Q tRNA(Asp) synthetasechromosome I CDS631529 897 - 0.42029
rbfA PSHAa0998 ribosome-binding factor A, role in processing of 16S rRNAchromosome I CDS1035731 501 + 0.39521
rhlB PSHAa0114 ATP-dependent RNA helicase with nucleoside triP hydrolase domain, putative cold-shock proteinchromosome I CDS120724 1263 + 0.4038
rhlE PSHAa1930 putative ATP-dependent RNA helicase with P-loop hydrolase domainchromosome I CDS2039821 1401 - 0.441114
rhlE PSHAa2983 DEAD-box protein family; putative ATP-dependent RNA helicase with P-loop hydrolase domainchromosome I CDS3170170 1305 - 0.419157
rhlE PSHAb0411 putative ATP-dependent RNA helicase with P-loop hydrolase domain; DEAD-box protein familychromosome II CDS467541 1302 + 0.417051
rimK PSHAa2577 ribosomal protein S6 modification proteinchromosome I CDS2723323 906 - 0.432671
rimM PSHAa0945 16S rRNA processing proteinchromosome I CDS974271 537 + 0.445065
rlmB PSHAa2479 Gm2251 methyltransferase of 23S rRNAchromosome I CDS2629945 744 - 0.442204
rluA PSHAa2627 pseudouridylate synthase for 23S rRNA (position 746) and tRNAphe(position 32), dual specificitychromosome I CDS2779449 702 + 0.472934
rluB PSHAa1342 pseudouridine synthase (makes pseudouridine2605 in 23 S RNA)chromosome I CDS1389476 873 + 0.419244
rluC PSHAa1815 23S rRNA pseudouridylate synthase, in E. coli modifies positions 955, 2504, and 2580 in 23 S ribosomal RNAchromosome I CDS1902342 960 - 0.410417
rluC PSHAb0436 putative ribosomal RNA pseudouridine synthasechromosome II CDS494462 984 + 0.372967
rluD PSHAa0933 pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)chromosome I CDS961171 978 + 0.43047
rluE PSHAa1688 ribosomal large subunit pseudouridine synthase E (Pseudouridylate synthase) (Uracil hydrolyase)chromosome I CDS1764379 684 + 0.415205
rmf PSHAa1490 ribosome modulation factorchromosome I CDS1569068 171 + 0.380117
rnd PSHAb0503 putative RNase D, processing tRNA precursorschromosome II CDS568869 1131 + 0.365164
rne PSHAa1816 RNase E: endoribonuclease for rRNA processing and mRNA degradation; member of the degradosome; involved in the production of deoxyribonucleotides viachromosome I CDS1904072 3216 + 0.439988
rng PSHAa2678 RNase G (ribonuclease G)chromosome I CDS2833764 1473 - 0.413442
rnpA PSHAa3025 Ribonuclease P protein component (RNaseP protein) (RNase P protein) (Protein C5)chromosome I CDS3214022 423 - 0.397163
rph PSHAa2788 RNase PH (tRNA nucleotidyltransferase)chromosome I CDS2966543 714 - 0.434174
rplA PSHAa0219 50S ribosomal subunit protein L1chromosome I CDS226109 705 + 0.428369
rplB PSHAa0147 50S ribosomal protein L2chromosome I CDS158157 825 + 0.452121
rplC PSHAa0144 50S ribosomal subunit protein L3chromosome I CDS156584 636 + 0.455975
rplD PSHAa0145 50S ribosomal subunit protein L4chromosome I CDS157237 606 + 0.432343
rplE PSHAa2818 50S ribosomal subunit protein L5chromosome I CDS2992167 540 - 0.444444
rplF PSHAa2815 50S ribosomal subunit protein L6chromosome I CDS2990890 534 - 0.423221
rplI PSHAa2439 50S ribosomal subunit protein L9chromosome I CDS2588854 453 - 0.430464
rplJ PSHAa0220 50S ribosomal protein L10chromosome I CDS227136 495 + 0.432323
rplK PSHAa0218 50S ribosomal subunit protein L11chromosome I CDS225676 429 + 0.459207
rplL PSHAa0221 50S ribosomal subunit protein L7/L12chromosome I CDS227705 363 + 0.443526
rplM PSHAa2532 50S ribosomal subunit protein L13chromosome I CDS2684457 429 - 0.407925
rplN PSHAa2820 50S ribosomal subunit protein L14chromosome I CDS2993048 369 - 0.444444
rplO PSHAa2811 50S ribosomal subunit protein L15chromosome I CDS2989390 435 - 0.45977
rplP PSHAa0151 50S ribosomal subunit protein L16chromosome I CDS160348 414 + 0.461353
rplQ PSHAa2805 50S ribosomal protein L17chromosome I CDS2984941 402 - 0.445274
rplR PSHAa2814 50S ribosomal subunit protein L18chromosome I CDS2990530 351 - 0.481481
rplS PSHAa0947 50S ribosomal subunit protein L19chromosome I CDS975608 360 + 0.427778
rplT PSHAa1399 50S ribosomal subunit protein L20, also posttranslational autoregulatorchromosome I CDS1466634 363 + 0.446281
rplU PSHAa2656 50S ribosomal subunit protein L21chromosome I CDS2810570 312 - 0.419872
rplV PSHAa0149 50S ribosomal subunit protein L22chromosome I CDS159289 333 + 0.462462
rplW PSHAa0146 50S ribosomal subunit protein L23chromosome I CDS157839 303 + 0.405941
rplX PSHAa2819 50S ribosomal subunit protein L24chromosome I CDS2992723 315 - 0.4
rplY PSHAa1053 50S ribosomal protein L25chromosome I CDS1090482 615 - 0.396748
rpmA PSHAa2655 50S ribosomal subunit protein L27chromosome I CDS2810296 258 - 0.437984
rpmB PSHAa2642 50S ribosomal subunit protein L28chromosome I CDS2793792 288 - 0.416667
rpmC PSHAa0152 50S ribosomal subunit protein L29chromosome I CDS160761 192 + 0.421875
rpmD PSHAa2812 50S ribosomal subunit protein L30chromosome I CDS2989829 183 - 0.393443
rpmE PSHAa2726 50S ribosomal subunit protein L31chromosome I CDS2892535 216 - 0.402778
rpmF PSHAa1811 50S ribosomal subunit protein L32chromosome I CDS1900236 171 - 0.450292
rpmG PSHAa2641 50S ribosomal subunit protein L33chromosome I CDS2793625 156 - 0.346154
rpmH PSHAa3026 50S ribosomal subunit protein L34chromosome I CDS3214452 135 - 0.451852
rpmI PSHAa1398 50S ribosomal subunit protein Achromosome I CDS1466418 201 + 0.40796
rpmJ PSHAb0382 50S ribosomal protein L36 (Ribosomal protein B)chromosome II CDS447113 135 - 0.407407
rpsA PSHAa1425 30S ribosomal subunit protein S1; site specific RNA helicase; component of the degradosomechromosome I CDS1500347 1668 + 0.419664
rpsB PSHAa2036 30S ribosomal subunit protein S2chromosome I CDS2151068 729 - 0.444444
rpsC PSHAa0150 30S ribosomal subunit protein S3chromosome I CDS159634 702 + 0.440171
rpsD PSHAa2807 30S ribosomal subunit protein S4chromosome I CDS2986393 621 - 0.431562
rpsE PSHAa2813 30S ribosomal subunit protein S5chromosome I CDS2990014 507 - 0.441815
rpsF PSHAa2443 30S ribosomal subunit protein S6chromosome I CDS2589945 342 - 0.44152
rpsG PSHAa0225 30S ribosomal subunit protein S7chromosome I CDS237306 471 + 0.44586
rpsH PSHAa2816 30S ribosomal subunit protein S8chromosome I CDS2991437 393 - 0.422392
rpsI PSHAa2531 30S ribosomal subunit protein S9chromosome I CDS2684056 390 - 0.448718
rpsJ PSHAa0143 30S ribosomal subunit protein S10 (NusE protein)chromosome I CDS156245 312 + 0.461538
rpsK PSHAa2808 30S ribosomal subunit protein S11chromosome I CDS2987035 387 - 0.447028
rpsL PSHAa0224 30S ribosomal protein S12chromosome I CDS236833 375 + 0.464
rpsM PSHAa2809 30S ribosomal subunit protein S13chromosome I CDS2987434 357 - 0.462185
rpsN PSHAa2817 30S ribosomal subunit protein S14chromosome I CDS2991851 306 - 0.464052
rpsO PSHAa1000 30S ribosomal subunit protein S15chromosome I CDS1037329 270 + 0.411111
rpsP PSHAa0944 30S ribosomal subunit protein S16chromosome I CDS974005 249 + 0.453815
rpsQ PSHAa0153 30S ribosomal subunit protein S17chromosome I CDS160952 258 + 0.395349
rpsR PSHAa2440 30S ribosomal subunit protein S18chromosome I CDS2589343 228 - 0.429825
rpsS PSHAa0148 30S ribosomal protein S19chromosome I CDS158985 291 + 0.457045
rpsT PSHAa0914 30S ribosomal subunit protein S20chromosome I CDS943127 261 - 0.40613
rpsU PSHAa0352 30S ribosomal subunit protein S21chromosome I CDS366251 216 - 0.421296
rsmB PSHAa0021 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependentchromosome I CDS24095 1296 - 0.426698
rsmC PSHAa0552 putative ribosomal RNA small subunit methyltransferase Cchromosome I CDS567820 1026 - 0.377193
rsmD PSHAa2245 Putative ribosomal RNA small subunit methyltransferase D (rRNA (guanine-N(2)-)-methyltransferase) (16S rRNA m2G966 methyltransferase)chromosome I CDS2383789 1149 + 0.396867
rsuA PSHAa0467 16S rRNA pseudouridylate 516 synthasechromosome I CDS486414 699 - 0.41774
rumA PSHAa0738 23S rRNA (uracil-5)-methyltransferase, responsible for modification at position U1939, SAM-dependentchromosome I CDS771004 1326 + 0.386878
serS PSHAa1712 serine tRNA synthetasechromosome I CDS1790014 1305 - 0.456705
srmB PSHAa1432 ATP-dependent RNA helicase, DEAD box familychromosome I CDS1505925 1323 - 0.406652
srmB PSHAa0510 ATP-dependent RNA helicasechromosome I CDS524696 1227 - 0.414833
tadA PSHAa2333 tRNA-specific adenosine deaminasechromosome I CDS2477274 507 - 0.424063
tgt PSHAa0319 Queuine tRNA-ribosyltransferase(tRNA-guanine transglycosylase)(Guanine insertion enzyme)chromosome I CDS334722 1128 + 0.430851
thrS PSHAa1396 threonyl-tRNA synthetasechromosome I CDS1463673 1911 + 0.411826
trmA PSHAa0250 tRNA (Uracil-5-)-methyltransferase (tRNA(M-5-U54)-methyltransferase) (RUMT)chromosome I CDS261601 1104 - 0.391304
trmD PSHAa0946 tRNA (guanine-7-)-methyltransferasechromosome I CDS974807 768 + 0.454427
trmH PSHAa2798 putative tRNA methyltransferase (tRNA mG18-2'-O-methyltransferase)chromosome I CDS2975610 687 + 0.422125
trpS PSHAa2708 tryptophanyl-tRNA synthetasechromosome I CDS2871636 1005 - 0.420896
truA PSHAa2075 tRNA pseudouridylate synthase Ichromosome I CDS2195048 795 - 0.407547
truB PSHAa0999 tRNA pseudouridine 5S synthasechromosome I CDS1036215 960 + 0.41875
truC PSHAa1970 tRNA pseudouridine synthase Cchromosome I CDS2073976 765 - 0.419608
tsf PSHAa2035 protein chain elongation factor EF-Tschromosome I CDS2150113 852 - 0.420188
tufA PSHAa0227 protein chain elongation factor EF-Tu; GTP-binding factorchromosome I CDS239981 1185 + 0.450633
tufB PSHAa2911 protein chain elongation factor EF-Tu; possible GTP-binding factor (duplicate of tufA)chromosome I CDS3079383 1185 - 0.448945
tyrS PSHAa2413 tyrosine tRNA synthetasechromosome I CDS2561452 1263 - 0.420428
tyrZ PSHAa0545 Tyrosyl-tRNA synthetase IIchromosome I CDS559119 1200 + 0.4075
valS PSHAa2425 valine tRNA synthetasechromosome I CDS2575334 2856 + 0.436625
yciO PSHAa1295 putative RNA binding protein with YrdC/RibB domainchromosome I CDS1353352 621 + 0.386473
yhbY PSHAa0868 RNA binding protein; ancient RNA-binding IF3-C foldchromosome I CDS894707 297 - 0.37037