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2024-04-29 05:58:10

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Lactobacillus sakei subsp. sakei 23K, 23K

Number of genes found: 147

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Lactobacillus sakei subsp. sakei 23K, 23K
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA LSA0811 Putative acetyltransferasechromosome CDS804395 555 + 0.403604
NA LSA1615 Putative ATP-dependent RNA helicasechromosome CDS1600484 1593 - 0.417451
NA LSA0333 Putative nucleotide methyltransferasechromosome CDS338196 606 + 0.40264
NA LSA0987 Hypotehtical protein, GidA family (C-terminal fragment)chromosome CDS980403 561 - 0.41533
NA LSA1245 Hypothetical proteinchromosome CDS1223453 519 - 0.385356
NA LSA1380 Putative tRNA/rRNA methyltransferasechromosome CDS1348279 762 - 0.408136
NA LSA1600 Putative RNA-binding proteinchromosome CDS1585478 444 - 0.427928
NA LSA1041 Hypothetical proteinchromosome CDS1033138 399 - 0.370927
NA LSA1544 Putative RNA methyltransferasechromosome CDS1513347 1365 - 0.413187
NA LSA1136 Putative protoporphyrinogen oxidase, HemKchromosome CDS1123618 870 - 0.437931
NA LSA1534 Putative ATP-dependent RNA helicasechromosome CDS1505389 1347 - 0.442465
NA LSA0494 30S ribosomal interface protein S30EAchromosome CDS512080 546 + 0.362637
NA LSA0019 Putative GTP-binding proteinchromosome CDS20351 1101 + 0.437784
NA LSA1595 Putative dihydrouridine synthetasechromosome CDS1579208 987 - 0.45694
NA LSA1679 Putative tRNA/rRNA methyltransferasechromosome CDS1659501 888 - 0.42455
NA LSA1475 Hypothetical proteinchromosome CDS1452214 537 - 0.430168
NA LSA1249 Putative 50S ribosomal protein, L7A familychromosome CDS1228741 306 - 0.444444
NA LSA0385 Putative ATP-dependent DNA/RNA helicasechromosome CDS392226 1356 + 0.402655
NA LSA1392 Hypothetical proteinchromosome CDS1358827 318 - 0.342767
NA LSA1824 Putative N-acetyltransferase, GNAT familychromosome CDS1815693 528 - 0.410985
NA LSA1479 Putative RNA methyltransferase, TrmA familychromosome CDS1455300 1392 + 0.449713
NA LSA0671 Putative ribosomal proteinchromosome CDS672406 342 + 0.44152
NA LSA0680 Putative rRNA methylase, hemolysin A homologchromosome CDS678340 831 + 0.417569
NA LSA0443 Putative single-stranded mRNA endoribonucleasechromosome CDS457790 369 + 0.384824
NA LSA0568 Putative SakacinP immunity protein, SpiAchromosome CDS581106 288 + 0.402778
NA LSA0479 Putative rRNA methyltransferasechromosome CDS496199 510 + 0.396078
NA LSA0988 Hypotehtical protein, GidA family (N-terminal fragment)chromosome CDS980941 774 - 0.450904
NA LSA0690 Putative rRNA methytransferase (sun protein)chromosome CDS687821 1344 + 0.448661
NA LSA1135 Putative translation factor, SUA5 familychromosome CDS1122560 1029 - 0.455782
NA LSA0335 Putative cytidine deaminasechromosome CDS339299 519 + 0.458574
NA LSA1602 Hypothetical protein with RNA-binding domain S4chromosome CDS1586586 267 - 0.333333
NA LSA0437 Hypothetical protein with an RNA-binding domainchromosome CDS444373 378 + 0.431217
NA LSA0406 Putative nucleoside triphosphatase, Ham1 familychromosome CDS414909 1233 + 0.454177
Rpl19 LSA0719 50S ribosomal protein L19chromosome CDS721143 348 + 0.431034
alaS LSA0387 Alanyl-tRNA synthetasechromosome CDS394850 2637 + 0.417899
argS LSA1421 Arginyl-tRNA synthetasechromosome CDS1389483 1692 - 0.411939
asnA1 LSA0347 L-asparaginasechromosome CDS347803 975 - 0.461538
asnS LSA0914 Asparaginyl-tRNA synthetasechromosome CDS904921 1299 + 0.387221
aspS LSA0864 Aspartyl-tRNA synthetasechromosome CDS852574 1773 + 0.410039
cysS LSA1681 Cysteinyl-tRNA synthetasechromosome CDS1660779 1407 - 0.431414
def1 LSA1087 Formylmethionine deformylase (N-formylmethionylaminoacyl-tRNA deformylase)chromosome CDS1082468 558 + 0.422939
def2 LSA1499 Formylmethionine deformylase (formyl-L-methionyl peptideamidohydrolase)chromosome CDS1471889 411 + 0.411192
dtd LSA0738 D-tyrosyl-tRNA(tyr) deacylasechromosome CDS734933 447 + 0.416107
efp1 LSA0251 Elongation factor P (EF-P)chromosome CDS246457 564 + 0.374113
efp2 LSA0673 Elongation factor P (EF-P)chromosome CDS673365 558 + 0.383513
fmt LSA0689 Methionyl-tRNA formyltransferasechromosome CDS686875 957 + 0.443051
frr LSA1262 Ribosome recycling factor (ribosome releasing factor) (RRF)chromosome CDS1245772 558 - 0.403226
fusA LSA1768 Elongation factor G (EF-G)chromosome CDS1739070 2088 - 0.400383
gatA LSA1547 Glutamyl-tRNA amidotransferase, subunit Achromosome CDS1517273 1467 - 0.432175
gatB LSA1546 Glutamyl-tRNA amidotransferase, subunit Bchromosome CDS1515843 1431 - 0.409504
gatC LSA1548 Glutamyl-tRNA amidotransferase, subunit Cchromosome CDS1518742 297 - 0.414141
gltX LSA0290 Glutamyl-tRNA synthetasechromosome CDS288994 1488 + 0.402554
glyQ LSA0880 Glycyl-tRNA synthetase, alpha subunitchromosome CDS865906 918 + 0.417211
glyS LSA0881 Glycyl-tRNA synthetase, beta subunitchromosome CDS866816 2082 + 0.426033
hisS LSA0863 Histidyl-tRNA synthetasechromosome CDS851270 1305 + 0.422222
ileS LSA0756 Isoleucyl-tRNA synthetasechromosome CDS750528 2787 + 0.420883
infA LSA1743 Translation initiation factor IF-1chromosome CDS1725975 219 - 0.369863
infB LSA1248 Translation initiation factor IF-2chromosome CDS1225910 2814 - 0.424307
infC LSA1398 Translation initiation factor IF-3chromosome CDS1362712 504 - 0.404762
ksgA LSA1655 Dimethyladenosine transferase (S-adenosylmethionine-6-N, N-adenosyl(rRNA) dimethyltransferase)chromosome CDS1638869 894 - 0.387025
leuS LSA1436 Leucyl-tRNA synthetasechromosome CDS1408408 2424 - 0.42368
lysS LSA1594 Lysyl-tRNA synthetasechromosome CDS1577615 1518 - 0.401186
miaA LSA1326 tRNA isopentenyltransferase (tRNA delta(2)-isopentenylpyrophosphate transferase) (IPP transferase)chromosome CDS1296696 933 - 0.445874
papS LSA1004 Polynucleotide adenyltransferasechromosome CDS995812 1194 - 0.452261
pepM LSA1515 Methionyl aminopeptidase Mchromosome CDS1490240 798 - 0.428571
pheS LSA1376 Phenylalanyl-tRNA synthetase, alpha subunitchromosome CDS1345896 1047 - 0.426934
prfA LSA1137 Peptide chain release factor 1chromosome CDS1124465 1098 - 0.404372
prfB LSA0496 Peptide chain release factor 2chromosome CDS515425 999 + 0.433433
prfC LSA1469 Peptide chain release factor 3 (RF-3)chromosome CDS1445002 1578 - 0.41128
prmA LSA0734 Ribosomal protein L11 methyltransferasechromosome CDS730555 903 + 0.465116
proS LSA1257 Prolyl-tRNA synthetasechromosome CDS1238006 1710 - 0.418713
pth LSA1605 Aminoacyl-tRNA hydrolase (Peptidyl-tRNA hydrolase)chromosome CDS1592242 558 - 0.392473
queA LSA0368 S-adenosylmethionine:tRNAribosyltransferase-isom erasechromosome CDS371551 1032 + 0.410853
rbfA LSA1247 Ribosome-binding factor Achromosome CDS1225531 357 - 0.37535
rimM LSA0717 16S rRNA processing protein, RimMchromosome CDS719764 531 + 0.399247
rluA1 LSA0620 Pseudouridine synthase, 23S-rRNA-specificchromosome CDS621318 891 - 0.45679
rluA2 LSA0949 Pseudouridylate synthase, 23S rRNA-specificchromosome CDS935690 906 + 0.430464
rluA3 LSA1316 Pseudouridylate synthase, 23S rRNA-specificchromosome CDS1288899 903 - 0.458472
rluA4 LSA1442 Pseudouridine synthase, 23S-rRNA-specificchromosome CDS1416481 921 - 0.44734
rnpA LSA1885 Ribonuclease P protein componentchromosome CDS1883731 363 - 0.391185
rplA LSA1671 50S ribosomal protein L1chromosome CDS1654677 690 - 0.415942
rplB LSA1761 50S ribosomal protein L2chromosome CDS1734825 834 - 0.416067
rplC LSA1764 50S ribosomal protein L3chromosome CDS1736628 633 - 0.412322
rplD LSA1763 50S ribosomal protein L4chromosome CDS1735981 624 - 0.399038
rplE LSA1752 50S ribosomal protein L5chromosome CDS1731176 543 - 0.375691
rplF LSA1750 50S ribosomal protein L6chromosome CDS1729979 534 - 0.393258
rplI LSA0011 50S Ribosomal protein L9chromosome CDS12737 453 + 0.412804
rplJ LSA1667 50S ribosomal protein L10chromosome CDS1649306 504 - 0.404762
rplK LSA1672 50S ribosomal protein L11chromosome CDS1655465 426 - 0.431925
rplL LSA1666 50S ribosomal protein L7/L12chromosome CDS1648874 369 - 0.398374
rplM LSA1722 50S ribosomal protein L13chromosome CDS1705592 444 - 0.391892
rplN LSA1754 50S ribosomal protein L14chromosome CDS1732089 369 - 0.420054
rplO LSA1746 50S ribosomal protein L15chromosome CDS1728391 435 - 0.418391
rplP LSA1757 50S ribosomal protein L16chromosome CDS1732977 435 - 0.445977
rplQ LSA1738 50S ribosomal protein L17chromosome CDS1723593 381 - 0.388451
rplR LSA1749 50S ribosomal protein L18chromosome CDS1729579 360 - 0.441667
rplT LSA1396 50S ribosomal protein L20chromosome CDS1362034 360 - 0.411111
rplU LSA0670 50S ribosomal protein L21chromosome CDS672083 309 + 0.378641
rplV LSA1759 50S ribosomal protein L22chromosome CDS1734087 354 - 0.412429
rplW LSA1762 50S ribosomal protein L23chromosome CDS1735697 285 - 0.4
rplX LSA1753 50S ribosomal protein L24chromosome CDS1731747 312 - 0.378205
rpmA LSA0672 50S Ribosomal protein L27chromosome CDS672776 288 + 0.427083
rpmB LSA0696 50S ribosomal protein L28chromosome CDS694487 186 - 0.413978
rpmC LSA1756 50S ribosomal protein L29chromosome CDS1732793 195 - 0.34359
rpmD LSA1747 50S ribosomal protein L30chromosome CDS1728860 186 - 0.360215
rpmE LSA1627 50S ribosomal protein L31chromosome CDS1611937 264 - 0.367424
rpmF LSA1039 50S ribosomal protein L32chromosome CDS1029820 183 - 0.420765
rpmG1 LSA1333 50S ribosomal protein L33chromosome CDS1301232 150 - 0.366667
rpmG2 LSA1676 50S ribosomal protein L33chromosome CDS1658051 150 - 0.393333
rpmH LSA1886 50S ribosomal protein L34chromosome CDS1884159 141 - 0.404255
rpmI LSA1397 50S ribosomal protein L35chromosome CDS1362478 201 - 0.412935
rpmJ LSA1742 50S ribosomal protein L36chromosome CDS1725826 117 - 0.358974
rpsA LSA1017 30S Ribosomal protein S1chromosome CDS1007663 1212 - 0.385314
rpsB LSA1265 30S ribosomal protein S2chromosome CDS1248175 795 - 0.393711
rpsC LSA1758 30S ribosomal protein S3chromosome CDS1733414 660 - 0.425758
rpsD LSA0844 30S Ribosomal protein S4chromosome CDS829520 606 - 0.40264
rpsE LSA1748 30S ribosomal protein S5chromosome CDS1729060 501 - 0.42515
rpsF LSA0007 30S Ribosomal protein S6chromosome CDS9348 297 + 0.367003
rpsG LSA1769 30S ribosomal protein S7chromosome CDS1741253 471 - 0.418259
rpsH LSA1751 30S ribosomal protein S8chromosome CDS1730543 399 - 0.398496
rpsI LSA1721 30S ribosomal protein S9chromosome CDS1705186 393 - 0.412214
rpsJ LSA1765 30S ribosomal protein S10chromosome CDS1737304 309 - 0.372168
rpsK LSA1740 30S ribosomal protein S11chromosome CDS1725022 393 - 0.440204
rpsL LSA1770 30S ribosomal protein S12chromosome CDS1741813 414 - 0.415459
rpsM LSA1741 30S Ribosomal protein S13chromosome CDS1725438 366 - 0.431694
rpsN LSA0266 30S ribosomal protein S14chromosome CDS261086 270 + 0.455556
rpsO LSA1066 30S Ribosomal protein S15chromosome CDS1061953 270 - 0.381481
rpsP LSA0715 30S ribosomal protein S16chromosome CDS719171 276 + 0.384058
rpsQ LSA1755 30S ribosomal protein S17chromosome CDS1732500 270 - 0.366667
rpsR LSA0009 30S Ribosomal protein S18chromosome CDS10226 240 + 0.429167
rpsS LSA1760 30S ribosomal protein S19chromosome CDS1734459 282 - 0.425532
rpsT LSA1067 30S Ribosomal protein S20chromosome CDS1062501 255 + 0.396078
rpsU LSA0873 30S ribosomal protein S21chromosome CDS861130 177 + 0.38983
rsuA1 LSA1024 Pseudouridylate synthase, 16SrRNA-specificchromosome CDS1014170 771 - 0.40856
rsuA2 LSA1431 Pseudouridylate synthase, 16S-rRNA-specificchromosome CDS1401593 720 - 0.440278
serS LSA1803 Seryl-tRNA synthetasechromosome CDS1792494 1275 - 0.428235
tgt LSA0377 Queuine tRNA-ribosyltransferasechromosome CDS381807 1143 + 0.432196
thrS LSA1400 Threonyl-tRNA synthetasechromosome CDS1364872 1971 - 0.398782
trmD LSA0718 tRNA (guanine-N1-)-methyltransferasechromosome CDS720284 741 + 0.421053
trmU LSA0794 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS785551 1140 + 0.439474
trpS LSA0327 Tryptophanyl--tRNA synthetasechromosome CDS331397 1017 + 0.419862
truA LSA1723 tRNA pseudouridylate synthase A (Pseudouridylate synthase I)chromosome CDS1706170 750 - 0.462667
truB LSA1242 tRNA-specific pseudouridylate synthase (tRNA pseudouridine synthase B)chromosome CDS1221469 918 - 0.422658
tsf LSA1264 Elongation factor Ts (EF-Ts)chromosome CDS1247193 876 - 0.405251
tuf LSA1063 Elongation factor Tuchromosome CDS1057557 1191 - 0.418136
tyrS LSA0769 Tyrosyl-tRNA synthetasechromosome CDS764868 1260 + 0.4
valS LSA0849 Valyl-tRNA synthetasechromosome CDS835833 2649 + 0.414496