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2024-05-02 23:14:47

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Rhodoferax ferrireducens DSM 15236, DSM 15236

Number of genes found: 174

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Rhodoferax ferrireducens DSM 15236, DSM 15236
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Rfer_1677 tRNA/rRNA methyltransferase (SpoU)chromosome CDS1807969 486 - 0.619342
NA Rfer_0989 Amidasechromosome CDS1038670 1413 - 0.611465
NA Rfer_0195 Sua5/YciO/YrdC/YwlCchromosome CDS193116 1170 - 0.674359
NA Rfer_4197 expressed proteinchromosome CDS4666279 732 - 0.558743
NA Rfer_0754 SmpA/OmlAchromosome CDS788926 513 + 0.625731
NA Rfer_0728 tyrosyl-tRNA synthetasechromosome CDS767940 1245 + 0.609639
NA Rfer_3247 putative transcriptional regulatory protein NadR (probably AsnC-family)chromosome CDS3599313 585 - 0.608547
NA Rfer_1895 pseudouridine synthasechromosome CDS2034268 909 - 0.656766
NA Rfer_4220 ribosomal protein S13chromosome CDS4694474 366 - 0.527322
NA Rfer_1784 lysyl-tRNA synthetasechromosome CDS1919356 1563 - 0.616763
NA Rfer_4219 ribosomal protein S11chromosome CDS4694050 405 - 0.540741
NA Rfer_3789 ribosomal protein S3chromosome CDS4232338 897 - 0.589744
NA Rfer_2638 methyltransferase smallchromosome CDS2902292 1230 + 0.64878
NA Rfer_1590 GCN5-related N-acetyltransferasechromosome CDS1720996 603 + 0.606965
NA Rfer_3243 seryl-tRNA synthetasechromosome CDS3594384 1359 - 0.599706
NA Rfer_4192 expressed proteinchromosome CDS4662013 681 - 0.565345
NA Rfer_3795 ribosomal protein L3chromosome CDS4235651 687 - 0.564774
NA Rfer_1489 3' exoribonucleasechromosome CDS1602173 2121 + 0.594059
NA Rfer_2003 tRNA/rRNA methyltransferase (SpoU)chromosome CDS2158741 795 + 0.615094
NA Rfer_2842 2',5' RNA ligasechromosome CDS3139901 543 - 0.635359
NA Rfer_1269 ribosomal protein L27chromosome CDS1362674 258 + 0.569767
NA Rfer_0096 dimethyladenosine transferasechromosome CDS98638 786 - 0.597964
NA Rfer_1337 translation initiation factor IF-3chromosome CDS1441422 516 + 0.562016
NA Rfer_1629 ribonuclease PHchromosome CDS1760267 732 + 0.607924
NA Rfer_1349 cysteinyl-tRNA synthetasechromosome CDS1451957 1413 + 0.58528
NA Rfer_2009 protein of unknown function UPF0044chromosome CDS2166067 474 - 0.584388
NA Rfer_4216 ribosomal protein L17chromosome CDS4691744 399 - 0.528822
NA Rfer_0645 peptide chain release factor 3chromosome CDS667781 1632 - 0.63174
NA Rfer_2827 3'-5' exonucleasechromosome CDS3127263 597 - 0.641541
NA Rfer_2136 tRNA pseudouridine synthase Bchromosome CDS2317103 1017 + 0.588004
NA Rfer_3593 ribosomal protein L7/L12chromosome CDS4005918 372 - 0.561828
NA Rfer_1662 Aminoacyl-tRNA hydrolasechromosome CDS1793597 678 + 0.575221
NA Rfer_2640 RNA-binding S4chromosome CDS2904105 426 + 0.669014
NA Rfer_3791 ribosomal protein S19chromosome CDS4233591 279 - 0.498208
NA Rfer_1992 ribosome recycling factorchromosome CDS2147596 561 + 0.559715
NA Rfer_1340 phenylalanyl-tRNA synthetase, alpha subunitchromosome CDS1442892 1074 + 0.590317
NA Rfer_2135 ribosome-binding factor Achromosome CDS2316730 369 + 0.588076
NA Rfer_3181 ribosomal protein L33chromosome CDS3518759 171 + 0.461988
NA Rfer_3788 ribosomal protein L16chromosome CDS4231919 417 - 0.527578
NA Rfer_3275 methionyl-tRNA synthetasechromosome CDS3634355 2103 + 0.582501
NA Rfer_1297 aspartyl-tRNA synthetasechromosome CDS1391057 1836 + 0.574074
NA Rfer_2506 Endoribonuclease L-PSPchromosome CDS2768019 456 + 0.574561
NA Rfer_1274 prolyl-tRNA synthetasechromosome CDS1366512 1803 + 0.627288
NA Rfer_2082 ribonuclease, Rne/Rng familychromosome CDS2256402 1476 + 0.588076
NA Rfer_2232 RNA methyltransferase TrmH, group 3chromosome CDS2447502 771 + 0.613489
NA Rfer_1338 ribosomal protein L35chromosome CDS1442114 222 + 0.536036
NA Rfer_3792 ribosomal protein L2chromosome CDS4233881 825 - 0.563636
NA Rfer_2134 translation initiation factor IF-2chromosome CDS2313765 2937 + 0.602996
NA Rfer_2778 RNA methyltransferase, TrmA familychromosome CDS3065109 1434 - 0.59205
NA Rfer_4233 ribosomal protein L14chromosome CDS4700329 369 - 0.528455
NA Rfer_0730 D-tyrosyl-tRNA(Tyr) deacylasechromosome CDS770126 480 + 0.654167
NA Rfer_0852 methionine aminopeptidase, type Ichromosome CDS888653 792 + 0.59596
NA Rfer_3596 ribosomal protein L11chromosome CDS4007833 432 - 0.530093
NA Rfer_1988 Amidasechromosome CDS2143437 1410 - 0.647518
NA Rfer_0712 Nucleotidyl transferasechromosome CDS753416 1131 - 0.599469
NA Rfer_3798 translation elongation factor Gchromosome CDS4238230 2103 - 0.553971
NA Rfer_1488 ribosomal protein S15chromosome CDS1601705 267 + 0.543071
NA Rfer_3028 DEAD/DEAH box helicase-likechromosome CDS3342906 1521 - 0.604865
NA Rfer_1413 DEAD/DEAH box helicase-likechromosome CDS1521515 1872 + 0.600962
NA Rfer_3544 RNA-binding S4chromosome CDS3941024 915 + 0.631694
NA Rfer_1990 translation elongation factor Tschromosome CDS2145780 924 + 0.589827
NA Rfer_1757 translation initiation factor SUI1chromosome CDS1890867 363 + 0.661157
NA Rfer_2043 modification methylase, HemK familychromosome CDS2210997 933 - 0.6388
NA Rfer_1090 metal dependent phosphohydrolasechromosome CDS1165735 1302 + 0.644393
NA Rfer_1341 phenylalanyl-tRNA synthetase, beta subunitchromosome CDS1443990 2433 + 0.599671
NA Rfer_2196 ribosomal protein L9chromosome CDS2396372 453 + 0.540839
NA Rfer_1403 16S rRNA processing protein RimMchromosome CDS1513272 564 + 0.576241
NA Rfer_0758 leucyl-tRNA synthetasechromosome CDS791439 2679 + 0.609183
NA Rfer_3797 translation elongation factor Tuchromosome CDS4236859 1191 - 0.594458
NA Rfer_2169 DEAD/DEAH box helicase-likechromosome CDS2364147 1725 - 0.633623
NA Rfer_0721 ribosomal protein L13chromosome CDS762655 432 + 0.541667
NA Rfer_1386 Class I peptide chain release factorchromosome CDS1499407 426 + 0.631455
NA Rfer_0628 S-adenosylmethioninechromosome CDS651353 1083 - 0.644506
NA Rfer_2306 histidyl-tRNA synthetasechromosome CDS2529071 1314 - 0.557839
NA Rfer_3860 Peptide deformylasechromosome CDS4309427 510 - 0.582353
NA Rfer_1721 Pseudouridine synthase, RluDchromosome CDS1860331 1041 + 0.59366
NA Rfer_3238 Sua5/YciO/YrdC/YwlCchromosome CDS3588752 624 + 0.61859
NA Rfer_3695 Glycine--tRNA ligasechromosome CDS4126786 2235 - 0.632215
NA Rfer_3793 Ribosomal protein L25/L23chromosome CDS4234708 327 - 0.507645
NA Rfer_3787 ribosomal protein L29chromosome CDS4231697 207 - 0.502415
NA Rfer_3240 tryptophanyl-tRNA synthetasechromosome CDS3590119 1299 + 0.596613
NA Rfer_3457 RNA-binding S4chromosome CDS3848383 789 + 0.656527
NA Rfer_1661 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5chromosome CDS1792838 672 + 0.580357
NA Rfer_3794 ribosomal protein L4/L1echromosome CDS4235031 621 - 0.529791
NA Rfer_2993 Asparaginasechromosome CDS3300350 1026 - 0.631579
NA Rfer_1404 tRNA (guanine-N1)-methyltransferasechromosome CDS1513846 747 + 0.60241
NA Rfer_3925 glutamyl-tRNA(Gln) amidotransferase, A subunitchromosome CDS4383312 1482 + 0.637652
NA Rfer_0750 sigma 54 modulation protein/ribosomal protein S30EAchromosome CDS786434 330 + 0.530303
NA Rfer_1382 Small GTP-binding protein domainchromosome CDS1494086 2055 + 0.636496
NA Rfer_3796 ribosomal protein S10chromosome CDS4236536 315 - 0.511111
NA Rfer_3790 ribosomal protein L22chromosome CDS4233251 330 - 0.530303
NA Rfer_1566 ribosomal protein S1chromosome CDS1691006 1701 - 0.583186
NA Rfer_2122 ribosomal protein S20chromosome CDS2299022 303 - 0.564356
NA Rfer_3859 methionyl-tRNA formyltransferasechromosome CDS4308459 972 - 0.656379
NA Rfer_4245 ribosomal protein L34chromosome CDS4711934 135 - 0.622222
NA Rfer_1279 modification methylase, HemK familychromosome CDS1372185 843 - 0.690391
NA Rfer_1967 beta-lactamase-likechromosome CDS2112188 1365 - 0.645421
NA Rfer_3365 tRNA-i(6)A37 modification enzyme MiaBchromosome CDS3735773 1359 - 0.614422
NA Rfer_4077 cytochrome c, class Ichromosome CDS4546230 330 - 0.515152
NA Rfer_4225 ribosomal protein L30chromosome CDS4697053 183 - 0.469945
NA Rfer_4222 translation initiation factor IF-1chromosome CDS4695043 219 - 0.47032
NA Rfer_3180 ribosomal protein L28chromosome CDS3518514 234 + 0.542735
NA Rfer_2010 ribosomal RNA methyltransferase RrmJ/FtsJchromosome CDS2166569 675 + 0.567407
NA Rfer_0765 glutathione synthetasechromosome CDS801508 948 + 0.646624
NA Rfer_1339 ribosomal protein L20chromosome CDS1442361 360 + 0.55
NA Rfer_3595 ribosomal protein L1chromosome CDS4007137 696 - 0.571839
NA Rfer_3749 Putative translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerasechromosome CDS4181010 1065 - 0.635681
NA Rfer_0626 queuine tRNA-ribosyltransferasechromosome CDS648806 1218 - 0.627258
NA Rfer_4218 ribosomal protein S4chromosome CDS4693331 624 - 0.504808
NA Rfer_1280 peptide chain release factor 1chromosome CDS1373108 1101 - 0.648501
NA Rfer_4227 ribosomal protein L18P/L5Echromosome CDS4697792 366 - 0.554645
NA Rfer_4244 hypothetical proteinchromosome CDS4711431 411 - 0.59854
NA Rfer_2509 poly(A) polymerasechromosome CDS2770986 1608 - 0.613184
NA Rfer_3590 sun proteinchromosome CDS3995777 1365 - 0.610256
NA Rfer_0590 alanyl-tRNA synthetasechromosome CDS612882 2631 - 0.624857
NA Rfer_3696 Glycine--tRNA ligasechromosome CDS4129109 978 - 0.599182
NA Rfer_4230 ribosomal protein S14chromosome CDS4699143 297 - 0.555556
NA Rfer_1720 ribonuclease, Rne/Rng familychromosome CDS1856782 3024 - 0.62963
NA Rfer_1336 threonyl-tRNA synthetasechromosome CDS1439257 2010 + 0.556716
NA Rfer_3579 DEAD/DEAH box helicase-likechromosome CDS3981305 1266 - 0.638231
NA Rfer_3594 ribosomal protein L10chromosome CDS4006332 537 - 0.56797
NA Rfer_1989 ribosomal protein S2chromosome CDS2144940 753 + 0.547145
NA Rfer_3599 translation elongation factor Tuchromosome CDS4009644 1191 - 0.596977
NA Rfer_3756 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS4189299 1155 + 0.621645
NA Rfer_4228 ribosomal protein L6chromosome CDS4698169 534 - 0.535581
NA Rfer_0653 ribosomal RNA methyltransferase RrmJ/FtsJchromosome CDS677672 822 + 0.609489
NA Rfer_1250 Nucleotidyl transferasechromosome CDS1344138 774 + 0.471576
NA Rfer_0969 Endoribonuclease L-PSPchromosome CDS1019560 402 + 0.539801
NA Rfer_0935 YjgF-like proteinchromosome CDS985194 393 + 0.613232
NA Rfer_3799 ribosomal protein S7chromosome CDS4240496 474 - 0.559072
NA Rfer_3786 ribosomal protein S17chromosome CDS4231417 270 - 0.518519
NA Rfer_2195 ribosomal protein S18chromosome CDS2396076 285 + 0.529825
NA Rfer_0328 conserved hypothetical proteinchromosome CDS327448 789 - 0.652725
NA Rfer_2376 valyl-tRNA synthetasechromosome CDS2615474 2973 + 0.607467
NA Rfer_2421 methionine aminopeptidase, type Ichromosome CDS2669448 828 + 0.605072
NA Rfer_4231 ribosomal protein L5chromosome CDS4699457 540 - 0.518519
NA Rfer_2286 CMP/dCMP deaminase, zinc-bindingchromosome CDS2509495 1092 - 0.60348
NA Rfer_4224 ribosomal protein L15chromosome CDS4696611 432 - 0.541667
NA Rfer_1975 conserved hypothetical proteinchromosome CDS2119856 1395 + 0.580645
NA Rfer_2314 Pseudouridine synthase, RluDchromosome CDS2537371 1005 - 0.579104
NA Rfer_3351 ribosomal protein L11 methyltransferasechromosome CDS3721698 906 - 0.592715
NA Rfer_1535 tRNA delta(2)-isopentenylpyrophosphate transferasechromosome CDS1651862 1053 - 0.662868
NA Rfer_2681 glutamyl-tRNA synthetasechromosome CDS2951768 1389 - 0.572354
NA Rfer_2900 ribosomal protein L31chromosome CDS3209170 324 + 0.524691
NA Rfer_2312 Pseudouridine synthase, Rsuchromosome CDS2535152 1401 - 0.58601
NA Rfer_0773 arginyl-tRNA synthetasechromosome CDS809683 1698 + 0.621908
NA Rfer_1823 glutaminyl-tRNA synthetasechromosome CDS1958399 1863 - 0.622115
NA Rfer_3926 glutamyl-tRNA(Gln) amidotransferase, B subunitchromosome CDS4384796 1491 + 0.604292
NA Rfer_1905 Glutamate--tRNA ligasechromosome CDS2045500 930 - 0.647312
NA Rfer_1405 ribosomal protein L19chromosome CDS1514761 381 + 0.52231
NA Rfer_2765 pseudouridine synthasechromosome CDS3053535 648 - 0.606481
NA Rfer_2202 Peptide deformylasechromosome CDS2407444 561 + 0.609626
NA Rfer_4232 ribosomal protein L24chromosome CDS4699999 321 - 0.504673
NA Rfer_2242 translation elongation factor Pchromosome CDS2455677 555 - 0.513514
NA Rfer_3183 Fmu (Sun)chromosome CDS3520376 1290 - 0.612403
NA Rfer_1790 tRNA pseudouridine synthase Achromosome CDS1925966 783 - 0.600255
NA Rfer_1402 ribosomal protein S16chromosome CDS1513010 252 + 0.587302
NA Rfer_2193 ribosomal protein S6chromosome CDS2395358 366 + 0.521858
NA Rfer_1268 ribosomal protein L21chromosome CDS1362267 396 + 0.512626
NA Rfer_4226 ribosomal protein S5chromosome CDS4697250 525 - 0.521905
NA Rfer_3924 glutamyl-tRNA(Gln) amidotransferase, C subunitchromosome CDS4382987 300 + 0.616667
NA Rfer_1432 isoleucyl-tRNA synthetasechromosome CDS1542489 2928 - 0.60724
NA Rfer_1728 ribosomal protein L32chromosome CDS1865573 183 + 0.562842
NA Rfer_4229 ribosomal protein S8chromosome CDS4698729 396 - 0.520202
NA Rfer_4221 ribosomal protein L36chromosome CDS4694864 132 - 0.469697
NA Rfer_2891 RNA methyltransferase TrmH, group 1chromosome CDS3193131 861 - 0.60511
NA Rfer_3577 DEAD/DEAH box helicase-likechromosome CDS3979493 1422 + 0.627286
NA Rfer_2771 phospholipid N-methyltransferasechromosome CDS3059669 579 - 0.533679
NA Rfer_2976 Pseudouridine synthase, Rsuchromosome CDS3282938 744 + 0.634409
NA Rfer_0722 ribosomal protein S9chromosome CDS763097 393 + 0.552163
NA Rfer_3800 ribosomal protein S12chromosome CDS4241119 378 - 0.547619
NA Rfer_0085 Nucleotidyl transferasechromosome CDS85846 819 + 0.650794
NA Rfer_4060 putative transmembrane proteinchromosome CDS4527788 963 - 0.630322
NA Rfer_2885 ribosomal protein S21chromosome CDS3188785 213 + 0.558685