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2024-05-07 18:00:29

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Rhodopseudomonas palustris HaA2, HaA2

Number of genes found: 192

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Rhodopseudomonas palustris HaA2, HaA2
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA RPB_0350 tRNA (guanine-N1)-methyltransferasechromosome CDS393368 759 - 0.710145
NA RPB_0549 RNA-binding S4chromosome CDS619310 270 + 0.659259
NA RPB_2861 Formyl transferase-likechromosome CDS3263280 591 + 0.71066
NA RPB_0605 Polyribonucleotide nucleotidyltransferasechromosome CDS678925 2157 + 0.654613
NA RPB_0627 Nucleotidyl transferasechromosome CDS708337 723 + 0.680498
NA RPB_0685 ribosomal protein L34chromosome CDS769053 135 - 0.696296
NA RPB_0419 Glutathione synthetasechromosome CDS462324 942 - 0.653928
NA RPB_4177 Class I peptide chain release factorchromosome CDS4749377 420 - 0.678571
NA RPB_2297 Ribosomal L23 proteinchromosome CDS2655651 300 + 0.596667
NA RPB_2293 translation elongation factor Tuchromosome CDS2652673 1191 + 0.644836
NA RPB_0283 2',5' RNA ligasechromosome CDS320215 567 - 0.659612
NA RPB_2306 ribosomal protein L24chromosome CDS2659560 315 + 0.615873
NA RPB_2956 translation elongation factor Pchromosome CDS3365514 567 + 0.617284
NA RPB_0058 methionine aminopeptidase, type Ichromosome CDS61107 825 + 0.644848
NA RPB_0491 conserved hypothetical proteinchromosome CDS550600 498 - 0.688755
NA RPB_3699 ribosomal protein S4chromosome CDS4237406 618 + 0.613269
NA RPB_0684 ribonuclease P protein componentchromosome CDS768688 342 - 0.666667
NA RPB_2301 ribosomal protein S3chromosome CDS2657511 699 + 0.656652
NA RPB_0086 RNA methyltransferasechromosome CDS92238 1353 - 0.705839
NA RPB_2840 conserved hypothetical proteinchromosome CDS3233347 1326 + 0.662142
NA RPB_1132 Sua5/YciO/YrdC/YwlCchromosome CDS1300762 990 - 0.748485
NA RPB_0352 ribosomal protein S16chromosome CDS394830 333 - 0.654655
NA RPB_2303 ribosomal protein L29chromosome CDS2658662 210 + 0.647619
NA RPB_2438 glutamyl-tRNA(Gln) amidotransferase, A subunitchromosome CDS2793329 1479 + 0.672076
NA RPB_2461 ribosomal protein L9chromosome CDS2818173 591 - 0.632826
NA RPB_0425 ribonuclease PHchromosome CDS467984 714 - 0.684874
NA RPB_4161 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5chromosome CDS4733315 723 - 0.691563
NA RPB_2314 ribosomal protein L15chromosome CDS2663117 486 + 0.670782
NA RPB_0075 peptide chain release factor 1chromosome CDS76273 1122 - 0.656863
NA RPB_4491 Ribosomal protein L31chromosome CDS5079618 228 + 0.570175
NA RPB_2985 DEAD/DEAH box helicasechromosome CDS3399339 1551 + 0.703417
NA RPB_2266 translation elongation factor Tuchromosome CDS2614825 1191 + 0.640638
NA RPB_2298 ribosomal protein L2chromosome CDS2655964 837 + 0.648746
NA RPB_1418 ribosomal protein L36chromosome CDS1607281 126 + 0.634921
NA RPB_1484 Amidasechromosome CDS1673415 1383 - 0.691974
NA RPB_2812 glutamyl-tRNA synthetasechromosome CDS3204605 1422 + 0.677918
NA RPB_2318 Ribosomal protein S11chromosome CDS2666791 390 + 0.682051
NA RPB_2085 Amidasechromosome CDS2370632 1200 + 0.730833
NA RPB_2597 prolyl-tRNA synthetasechromosome CDS2978821 1320 + 0.649242
NA RPB_4159 GTP-binding proteinchromosome CDS4731466 1098 - 0.642987
NA RPB_2884 Dihydrouridine synthase TIM-barrel protein nifR3chromosome CDS3284224 1065 - 0.680751
NA RPB_0045 phenylalanyl-tRNA synthetase, alpha subunitchromosome CDS44142 1125 + 0.648889
NA RPB_0304 conserved hypothetical proteinchromosome CDS345208 573 + 0.685864
NA RPB_0454 Pseudouridine synthase, RluDchromosome CDS500831 975 + 0.693333
NA RPB_0659 3'-5' exonucleasechromosome CDS743528 615 - 0.64878
NA RPB_2551 Amidasechromosome CDS2926326 1425 + 0.692632
NA RPB_1896 Amidasechromosome CDS2170314 1398 + 0.700286
NA RPB_3009 ribonuclease, Rne/Rng familychromosome CDS3429731 3183 + 0.672322
NA RPB_0248 GCN5-related N-acetyltransferasechromosome CDS281535 597 + 0.673367
NA RPB_1065 conserved hypothetical proteinchromosome CDS1220466 984 - 0.704268
NA RPB_2168 threonyl-tRNA synthetasechromosome CDS2460020 1986 - 0.652568
NA RPB_2742 seryl-tRNA synthetasechromosome CDS3125925 1431 - 0.642907
NA RPB_2309 Ribosomal protein S8chromosome CDS2660799 399 + 0.631579
NA RPB_2501 ErfK/YbiS/YcfS/YnhGchromosome CDS2863041 1767 - 0.679683
NA RPB_2825 ribosome recycling factorchromosome CDS3219782 564 - 0.618794
NA RPB_2302 ribosomal protein L16chromosome CDS2658243 414 + 0.676328
NA RPB_0546 ribosomal protein L28chromosome CDS614034 306 - 0.666667
NA RPB_2149 hypothetical proteinchromosome CDS2440197 222 + 0.666667
NA RPB_0360 MiaB-like tRNA modifying enzymechromosome CDS402018 1269 + 0.680851
NA RPB_2313 ribosomal protein L30chromosome CDS2662910 195 + 0.610256
NA RPB_2299 ribosomal protein S19chromosome CDS2656812 279 + 0.634409
NA RPB_0888 lysyl-tRNA synthetasechromosome CDS1016546 1638 + 0.655067
NA RPB_0246 ribosomal protein L21chromosome CDS280664 387 + 0.653747
NA RPB_0349 ribosomal protein L19chromosome CDS392860 396 - 0.643939
NA RPB_2125 Amidasechromosome CDS2417164 1416 - 0.687853
NA RPB_3399 TIM-barrel protein, yjbN familychromosome CDS3885700 999 - 0.67968
NA RPB_2434 glutamyl-tRNA(Gln) amidotransferase, C subunitchromosome CDS2792121 288 + 0.638889
NA RPB_0351 16S rRNA processing protein RimMchromosome CDS394275 549 - 0.708561
NA RPB_3159 peptide chain release factor 3chromosome CDS3614910 1626 - 0.656212
NA RPB_0385 leucyl-tRNA synthetasechromosome CDS426566 2625 + 0.658667
NA RPB_2414 ribosomal protein L33chromosome CDS2766904 168 - 0.547619
NA RPB_0600 translation initiation factor IF-2chromosome CDS673452 2661 + 0.68959
NA RPB_4187 Ribonuclease T2chromosome CDS4760075 696 - 0.683908
NA RPB_1109 conserved hypothetical proteinchromosome CDS1276879 594 + 0.676768
NA RPB_0675 tRNA pseudouridine synthase Achromosome CDS759551 738 + 0.693767
NA RPB_0673 Peptide deformylasechromosome CDS757821 528 + 0.621212
NA RPB_2811 glutaminyl-tRNA synthetasechromosome CDS3202762 1686 - 0.638197
NA RPB_3743 hypothetical proteinchromosome CDS4283639 258 + 0.612403
NA RPB_1427 conserved hypothetical proteinchromosome CDS1613705 1590 - 0.683648
NA RPB_2290 ribosomal protein S12chromosome CDS2649673 372 + 0.629032
NA RPB_2463 ribosomal protein S18chromosome CDS2819876 240 - 0.65
NA RPB_2475 dimethyladenosine transferasechromosome CDS2831435 864 - 0.689815
NA RPB_0361 Pseudouridine synthasechromosome CDS403466 903 - 0.69546
NA RPB_1793 DEAD/DEAH box helicasechromosome CDS2052451 1476 - 0.689024
NA RPB_2278 ribosomal protein L1chromosome CDS2626987 690 + 0.668116
NA RPB_4054 Amidasechromosome CDS4624766 1404 + 0.697293
NA RPB_1471 Phasin 2 proteinchromosome CDS1660620 432 + 0.627315
NA RPB_0814 Glutamyl-tRNA synthetase, class Icchromosome CDS930834 882 + 0.697279
NA RPB_2307 Ribosomal protein L5chromosome CDS2659867 558 + 0.629032
NA RPB_2440 glutamyl-tRNA(Gln) amidotransferase, B subunitchromosome CDS2796121 1485 + 0.643098
NA RPB_3151 conserved hypothetical proteinchromosome CDS3605077 582 + 0.670103
NA RPB_1093 glycyl-tRNA synthetase, alpha subunitchromosome CDS1253589 975 + 0.650256
NA RPB_4463 (Uracil-5)-methyltransferasechromosome CDS5053281 1239 + 0.692494
NA RPB_2277 ribosomal protein L11chromosome CDS2626553 429 + 0.615385
NA RPB_1300 Small GTP-binding protein domainchromosome CDS1481960 2067 + 0.68118
NA RPB_2320 ribosomal protein L17chromosome CDS2668453 417 + 0.640288
NA RPB_0220 Amidasechromosome CDS248432 1416 - 0.693503
NA RPB_2750 arginyl-tRNA synthetasechromosome CDS3134215 1794 - 0.650502
NA RPB_0691 Amidasechromosome CDS776531 1518 + 0.650856
NA RPB_2294 ribosomal protein S10chromosome CDS2653948 309 + 0.605178
NA RPB_2296 Ribosomal protein L4/L1echromosome CDS2655034 621 + 0.653784
NA RPB_2869 queuine tRNA-ribosyltransferasechromosome CDS3267085 1143 - 0.688539
NA RPB_2283 Ribosomal protein L10chromosome CDS2632869 519 + 0.61657
NA RPB_2408 Endoribonuclease L-PSPchromosome CDS2761294 468 - 0.67735
NA RPB_2295 Ribosomal protein L3chromosome CDS2654307 726 + 0.673554
NA RPB_2291 ribosomal protein S7chromosome CDS2650060 471 + 0.632696
NA RPB_2754 Neurotransmitter-gated ion-channel ligand-bindingchromosome CDS3138971 1062 + 0.646893
NA RPB_1820 Amidasechromosome CDS2082838 1452 + 0.679063
NA RPB_0993 tRNA synthetase, class II (G, H, P and S)chromosome CDS1136935 942 + 0.680467
NA RPB_1173 modification methylase, HemK familychromosome CDS1347173 1065 - 0.657277
NA RPB_2814 Twin-arginine translocation pathway signalchromosome CDS3207575 531 - 0.653484
NA RPB_2304 Ribosomal protein S17chromosome CDS2658883 249 + 0.614458
NA RPB_0654 sigma 54 modulation protein/ribosomal protein S30EAchromosome CDS738368 609 - 0.650246
NA RPB_2998 tyrosyl-tRNA synthetasechromosome CDS3412469 1257 + 0.652347
NA RPB_2494 ribonuclease Dchromosome CDS2853544 1149 - 0.659704
NA RPB_0548 helicasechromosome CDS615831 3438 + 0.698662
NA RPB_3062 hypothetical proteinchromosome CDS3493742 408 + 0.605392
NA RPB_1196 Polynucleotide adenylyltransferase regionchromosome CDS1371230 1257 + 0.71599
NA RPB_0514 ribosomal protein L32chromosome CDS575663 183 - 0.639344
NA RPB_0590 tRNA-i(6)A37 modification enzyme MiaBchromosome CDS662304 1407 + 0.687989
NA RPB_4116 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS4687068 1209 - 0.705542
NA RPB_2311 ribosomal protein L18chromosome CDS2661855 363 + 0.666667
NA RPB_2865 Endoribonuclease L-PSPchromosome CDS3264776 402 - 0.676617
NA RPB_2335 Pseudouridine synthase, RluDchromosome CDS2683716 1362 + 0.709985
NA RPB_4697 Initiation factor 2B alpha/beta/deltachromosome CDS5315549 1125 - 0.686222
NA RPB_3737 alanyl-tRNA synthetasechromosome CDS4273563 2676 - 0.673393
NA RPB_1171 Pseudouridine synthase, Rsuchromosome CDS1343935 2355 + 0.723992
NA RPB_0179 DEAD/DEAH box helicasechromosome CDS193912 2040 - 0.693627
NA RPB_3374 cysteinyl-tRNA synthetasechromosome CDS3857649 1482 - 0.618758
NA RPB_0601 ribosome-binding factor Achromosome CDS676260 408 + 0.656863
NA RPB_0247 ribosomal protein L27chromosome CDS281136 270 + 0.633333
NA RPB_3196 Ribosomal RNA methyltransferase RrmJ/FtsJchromosome CDS3654817 711 - 0.661041
NA RPB_0599 Protein of unknown function DUF448chromosome CDS672632 828 + 0.665459
NA RPB_3006 peptide chain release factor 2chromosome CDS3423797 969 - 0.665635
NA RPB_4576 GCN5-related N-acetyltransferasechromosome CDS5172662 588 - 0.666667
NA RPB_3346 tRNA delta(2)-isopentenylpyrophosphate transferasechromosome CDS3828206 933 - 0.707395
NA RPB_2827 translation elongation factor Tschromosome CDS3221206 927 - 0.658037
NA RPB_0603 tRNA pseudouridine synthase Bchromosome CDS677254 1056 + 0.674242
NA RPB_1679 Amidasechromosome CDS1910476 1503 - 0.693945
NA RPB_2646 SmpA/OmlAchromosome CDS3026266 477 - 0.628931
NA RPB_4057 Amidasechromosome CDS4627321 1800 + 0.706667
NA RPB_3804 Nucleotidyl transferasechromosome CDS4341566 918 - 0.654684
NA RPB_1170 CMP/dCMP deaminase, zinc-bindingchromosome CDS1343313 447 - 0.709172
NA RPB_3190 RNA methyltransferasechromosome CDS3648054 1305 - 0.721839
NA RPB_2681 methionyl-tRNA synthetasechromosome CDS3062953 1545 + 0.656958
NA RPB_2310 Ribosomal protein L6chromosome CDS2661310 534 + 0.632959
NA RPB_2284 ribosomal protein L7/L12chromosome CDS2633442 372 + 0.642473
NA RPB_2305 ribosomal protein L14chromosome CDS2659192 369 + 0.636856
NA RPB_2317 Ribosomal protein S13chromosome CDS2666293 369 + 0.626016
NA RPB_2312 ribosomal protein S5chromosome CDS2662278 576 + 0.682292
NA RPB_3949 conserved hypothetical proteinchromosome CDS4509610 978 - 0.723926
NA RPB_4182 isoleucyl-tRNA synthetasechromosome CDS4754286 3165 - 0.651185
NA RPB_2828 ribosomal protein S2chromosome CDS3222259 996 - 0.645582
NA RPB_2955 tRNA synthetase, class II (D, K and N)chromosome CDS3364318 1056 - 0.698864
NA RPB_4712 ribosomal protein S20chromosome CDS5330713 267 + 0.666667
NA RPB_0044 ribosomal protein L20chromosome CDS43644 360 + 0.663889
NA RPB_2870 Queuosine biosynthesis proteinchromosome CDS3268224 1155 - 0.700433
NA RPB_1185 Histidine--tRNA ligasechromosome CDS1359230 1581 + 0.633144
NA RPB_2012 ribosomal L11 methyltransferasechromosome CDS2289658 891 - 0.722783
NA RPB_4461 hemolysin Achromosome CDS5051012 741 + 0.695007
NA RPB_2671 ribosomal protein L13chromosome CDS3053536 465 + 0.63871
NA RPB_2203 RNA methyltransferase TrmH, group 3chromosome CDS2495058 822 - 0.711679
NA RPB_0583 tryptophanyl-tRNA synthetasechromosome CDS657004 1053 + 0.640076
NA RPB_2496 aspartyl-tRNA synthetasechromosome CDS2856531 1773 + 0.640722
NA RPB_1095 glycyl-tRNA synthetase, beta subunitchromosome CDS1255029 2283 + 0.635129
NA RPB_1904 GCN5-related N-acetyltransferasechromosome CDS2177880 615 + 0.655285
NA RPB_0065 translation initiation factor IF-3chromosome CDS68769 438 - 0.584475
NA RPB_2308 Ribosomal protein S14chromosome CDS2660480 306 + 0.630719
NA RPB_4550 Endoribonuclease L-PSPchromosome CDS5144947 387 + 0.674419
NA RPB_0604 ribosomal protein S15chromosome CDS678312 270 + 0.588889
NA RPB_2167 Tyrosinasechromosome CDS2458560 1251 - 0.673861
NA RPB_3586 Amidasechromosome CDS4110253 1350 - 0.701481
NA RPB_0244 GCN5-related N-acetyltransferasechromosome CDS278258 555 + 0.601802
NA RPB_0640 ribosomal protein S1chromosome CDS724493 1698 - 0.629564
NA RPB_1792 translation initiation factor IF-1chromosome CDS2052143 285 - 0.635088
NA RPB_2892 valyl-tRNA synthetasechromosome CDS3291322 2919 - 0.661185
NA RPB_0072 modification methylase, HemK familychromosome CDS74067 870 - 0.726437
NA RPB_1445 ribosomal protein S21chromosome CDS1632883 306 - 0.666667
NA RPB_2728 gid proteinchromosome CDS3111557 1449 + 0.692892
NA RPB_0940 Amidasechromosome CDS1087028 1515 + 0.657426
NA RPB_4616 conserved hypothetical proteinchromosome CDS5216818 1056 + 0.692235
NA RPB_2672 Ribosomal protein S9chromosome CDS3054002 477 + 0.67086
NA RPB_1006 conserved hypothetical proteinchromosome CDS1151261 1521 - 0.70217
NA RPB_2015 conserved hypothetical proteinchromosome CDS2293352 2283 + 0.672361
NA RPB_3629 Amidasechromosome CDS4165521 1434 + 0.695258
NA RPB_4160 peptidyl-tRNA hydrolasechromosome CDS4732673 624 - 0.633013
NA RPB_0043 ribosomal protein L35chromosome CDS43356 201 + 0.587065
NA RPB_2464 ribosomal protein S6chromosome CDS2820121 480 - 0.664583
NA RPB_2300 ribosomal protein L22chromosome CDS2657101 387 + 0.648579
NA RPB_2292 translation elongation factor Gchromosome CDS2650561 2073 + 0.633864
NA RPB_0674 methionyl-tRNA formyltransferasechromosome CDS758423 939 + 0.700745
NA RPB_1199 tRNA/rRNA methyltransferase (SpoU)chromosome CDS1373559 453 - 0.596026