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2024-05-06 09:21:08

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Frankia sp. CcI3, CcI3

Number of genes found: 176

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Frankia sp. CcI3, CcI3
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Francci3_0598 ribosomal protein L18chromosome CDS685719 375 + 0.746667
NA Francci3_3809 DEAD/DEAH box helicase-likechromosome CDS4566464 1950 + 0.741026
NA Francci3_0870 ribonuclease PHchromosome CDS1012776 744 - 0.706989
NA Francci3_0572 ribosomal protein L7/L12chromosome CDS661723 393 + 0.679389
NA Francci3_0600 ribosomal protein L30chromosome CDS686773 186 + 0.612903
NA Francci3_1220 ribosomal protein L21chromosome CDS1460092 318 + 0.669811
NA Francci3_0418 lysyl-tRNA synthetasechromosome CDS496147 1452 + 0.665978
NA Francci3_3558 tRNA pseudouridine synthase Bchromosome CDS4255698 984 - 0.743902
NA Francci3_3177 phenylalanyl-tRNA synthetase, alpha subunitchromosome CDS3766286 1104 - 0.728261
NA Francci3_0236 modification methylase, HemK familychromosome CDS276160 1011 + 0.724036
NA Francci3_1424 isoleucyl-tRNA synthetasechromosome CDS1714744 3210 - 0.716822
NA Francci3_0692 aspartyl-tRNA synthetasechromosome CDS791330 1863 + 0.685454
NA Francci3_0604 methionine aminopeptidase, type Ichromosome CDS689840 837 + 0.702509
NA Francci3_1442 conserved hypothetical proteinchromosome CDS1734162 180 - 0.65
NA Francci3_2714 CMP/dCMP deaminase, zinc-bindingchromosome CDS3199094 591 + 0.664975
NA Francci3_1131 GCN5-related N-acetyltransferasechromosome CDS1347997 573 + 0.691099
NA Francci3_4036 GCN5-related N-acetyltransferasechromosome CDS4821815 633 - 0.704581
NA Francci3_0027 hypothetical proteinchromosome CDS32939 1530 + 0.707843
NA Francci3_0595 ribosomal protein S14chromosome CDS684410 186 + 0.672043
NA Francci3_4440 Endoribonuclease L-PSPchromosome CDS5307592 429 + 0.687646
NA Francci3_3721 ribosomal protein L31chromosome CDS4453818 237 - 0.666667
NA Francci3_0606 ribosomal protein L36chromosome CDS691278 114 + 0.578947
NA Francci3_1221 ribosomal protein L27chromosome CDS1460415 267 + 0.700375
NA Francci3_3540 conserved hypothetical proteinchromosome CDS4228558 1572 - 0.737913
NA Francci3_0592 ribosomal protein L14chromosome CDS683067 369 + 0.685637
NA Francci3_3160 hemolysin Achromosome CDS3739926 876 - 0.740868
NA Francci3_3179 tRNA/rRNA methyltransferasechromosome CDS3768700 894 - 0.742729
NA Francci3_1799 hypothetical proteinchromosome CDS2133524 249 + 0.686747
NA Francci3_3273 Cupin 2chromosome CDS3874284 1989 - 0.707893
NA Francci3_3214 alanyl-tRNA synthetasechromosome CDS3806499 2646 - 0.723356
NA Francci3_1218 ribonuclease, Rne/Rng familychromosome CDS1455263 3585 + 0.730265
NA Francci3_0599 ribosomal protein S5-likechromosome CDS686165 609 + 0.70936
NA Francci3_0581 ribosomal protein S10chromosome CDS677311 309 + 0.634304
NA Francci3_0588 ribosomal protein S3chromosome CDS681044 948 + 0.721519
NA Francci3_3952 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5chromosome CDS4730986 633 - 0.703002
NA Francci3_0608 ribosomal protein S11chromosome CDS692051 405 + 0.681481
NA Francci3_3649 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS4359105 1059 - 0.731822
NA Francci3_0662 2',5' RNA ligasechromosome CDS758184 663 + 0.677225
NA Francci3_1314 aminoacyl-tRNA synthetase, class Iachromosome CDS1576324 2712 + 0.713864
NA Francci3_2072 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase)-likechromosome CDS2437071 699 - 0.648069
NA Francci3_0577 ribosomal protein S12chromosome CDS672798 375 + 0.650667
NA Francci3_0607 ribosomal protein S13chromosome CDS691592 381 + 0.666667
NA Francci3_3580 translation elongation factor Tschromosome CDS4279361 615 - 0.661789
NA Francci3_3930 Nucleotidyl transferasechromosome CDS4704013 855 + 0.669006
NA Francci3_3182 translation initiation factor IF-3chromosome CDS3770412 618 - 0.644013
NA Francci3_1057 RNA binding S1chromosome CDS1259062 1479 + 0.654496
NA Francci3_0580 translation elongation factor Tuchromosome CDS675819 1194 + 0.652429
NA Francci3_0280 CMP/dCMP deaminase, zinc-bindingchromosome CDS325516 531 - 0.764595
NA Francci3_2226 GCN5-related N-acetyltransferasechromosome CDS2599640 558 - 0.697133
NA Francci3_1331 3'-5' exonucleasechromosome CDS1597632 1284 - 0.742991
NA Francci3_4267 prolyl-tRNA synthetasechromosome CDS5090035 1407 + 0.709311
NA Francci3_4519 ribosomal protein L9chromosome CDS5394964 447 - 0.702461
NA Francci3_0584 Ribosomal protein L25/L23chromosome CDS679075 297 + 0.649832
NA Francci3_0491 methionyl-tRNA synthetasechromosome CDS575893 1566 - 0.685185
NA Francci3_0563 ribosomal protein L33chromosome CDS655015 165 + 0.624242
NA Francci3_3946 tyrosyl-tRNA synthetasechromosome CDS4724119 1287 + 0.686092
NA Francci3_3368 aminoglycoside phosphotransferasechromosome CDS3996751 807 - 0.741016
NA Francci3_2865 helicase-likechromosome CDS3377613 1125 + 0.756444
NA Francci3_4522 ribosomal protein S6chromosome CDS5396331 327 - 0.64526
NA Francci3_4548 ribosomal protein L34chromosome CDS5432652 138 - 0.724638
NA Francci3_3219 glutamyl-tRNA synthetasechromosome CDS3813594 1413 + 0.706299
NA Francci3_0843 conserved hypothetical proteinchromosome CDS984564 1371 - 0.740336
NA Francci3_0609 ribosomal protein S4chromosome CDS692551 630 + 0.666667
NA Francci3_3644 glutamyl-tRNA(Gln) amidotransferase, A subunitchromosome CDS4352846 1527 - 0.7315
NA Francci3_4282 Endoribonuclease L-PSPchromosome CDS5112189 465 + 0.752688
NA Francci3_0582 ribosomal protein L3chromosome CDS677637 708 + 0.707627
NA Francci3_2411 Methyltransferase type 12chromosome CDS2798766 1023 - 0.778104
NA Francci3_3166 Tetratricopeptide TPR_2chromosome CDS3745624 1965 - 0.763359
NA Francci3_0014 Peptide deformylasechromosome CDS17127 693 - 0.678211
NA Francci3_3642 glutamyl-tRNA(Gln) amidotransferase, B subunitchromosome CDS4351027 1518 - 0.715415
NA Francci3_2705 arginyl-tRNA synthetasechromosome CDS3189402 1797 - 0.680579
NA Francci3_3579 ribosome recycling factorchromosome CDS4278527 558 - 0.621864
NA Francci3_0590 ribosomal protein L29chromosome CDS682410 267 + 0.696629
NA Francci3_0569 ribosomal protein L11chromosome CDS659381 435 + 0.65977
NA Francci3_1361 elongation factor G, domain IVchromosome CDS1635621 2169 - 0.712771
NA Francci3_4246 RNA methyltransferase TrmH, group 3chromosome CDS5068198 1092 - 0.769231
NA Francci3_1261 ribosomal protein S20chromosome CDS1505927 270 - 0.648148
NA Francci3_3590 ribosomal protein L19chromosome CDS4289767 357 - 0.661064
NA Francci3_3516 tRNA delta(2)-isopentenylpyrophosphate transferasechromosome CDS4200022 876 - 0.690639
NA Francci3_2308 hypothetical proteinchromosome CDS2687064 684 + 0.758772
NA Francci3_3886 hypothetical proteinchromosome CDS4649715 672 + 0.699405
NA Francci3_0596 ribosomal protein S8chromosome CDS684749 411 + 0.652068
NA Francci3_3518 tRNA-i(6)A37 modification enzyme MiaBchromosome CDS4201727 1623 - 0.727665
NA Francci3_1454 Pseudouridine synthase, Rsuchromosome CDS1744945 759 + 0.719368
NA Francci3_3189 putative RNA-binding Sun proteinchromosome CDS3778339 1476 - 0.769648
NA Francci3_1867 tryptophanyl-tRNA synthetasechromosome CDS2201881 1113 - 0.646002
NA Francci3_0585 ribosomal protein L2chromosome CDS679418 834 + 0.696643
NA Francci3_3963 tryptophanyl-tRNA synthetasechromosome CDS4743191 1026 + 0.662768
NA Francci3_1742 hypothetical proteinchromosome CDS2076085 651 + 0.717358
NA Francci3_0802 conserved hypothetical proteinchromosome CDS933582 1434 + 0.728731
NA Francci3_1426 Pseudouridine synthase, RluDchromosome CDS1719111 942 + 0.72293
NA Francci3_1275 Glycine--tRNA ligasechromosome CDS1520749 3054 + 0.729862
NA Francci3_0612 tRNA pseudouridine synthase Achromosome CDS695373 825 + 0.73697
NA Francci3_0614 ribosomal protein L13chromosome CDS697993 444 + 0.664414
NA Francci3_3196 putative integration host factor MihFchromosome CDS3787390 318 - 0.669811
NA Francci3_1325 deoxyribonuclease/rho related TRAMchromosome CDS1588227 1467 + 0.773688
NA Francci3_3206 translation elongation factor Pchromosome CDS3798981 564 - 0.652482
NA Francci3_1853 putative TmrB-like proteinchromosome CDS2186394 636 + 0.68239
NA Francci3_3901 leucyl-tRNA synthetasechromosome CDS4667018 3195 + 0.706729
NA Francci3_3548 Histidine--tRNA ligasechromosome CDS4242295 1323 - 0.70068
NA Francci3_3190 methionyl-tRNA formyltransferasechromosome CDS3779811 1014 - 0.755424
NA Francci3_2105 GCN5-related N-acetyltransferasechromosome CDS2471104 582 + 0.649485
NA Francci3_0298 GCN5-related N-acetyltransferasechromosome CDS346650 477 + 0.568134
NA Francci3_4531 metal dependent phosphohydrolasechromosome CDS5408668 1509 - 0.709079
NA Francci3_0615 ribosomal protein S9chromosome CDS698530 408 + 0.688725
NA Francci3_0601 ribosomal protein L15chromosome CDS686961 531 + 0.704331
NA Francci3_3951 Aminoacyl-tRNA hydrolasechromosome CDS4730359 594 - 0.688552
NA Francci3_3608 ribosomal protein L28chromosome CDS4309921 189 + 0.677249
NA Francci3_3581 ribosomal protein S2chromosome CDS4280241 870 - 0.667816
NA Francci3_0575 pseudouridine synthasechromosome CDS670766 915 + 0.722404
NA Francci3_0766 GCN5-related N-acetyltransferasechromosome CDS890957 609 - 0.715928
NA Francci3_4116 ribosomal protein L11chromosome CDS4920400 498 + 0.596386
NA Francci3_2828 hypothetical proteinchromosome CDS3330267 372 - 0.75
NA Francci3_3147 threonyl-tRNA synthetasechromosome CDS3724801 2106 - 0.694207
NA Francci3_3727 Arginine--tRNA ligasechromosome CDS4462360 1047 - 0.7383
NA Francci3_3181 ribosomal protein L35chromosome CDS3770120 195 - 0.682051
NA Francci3_1463 Nucleotidyl transferasechromosome CDS1754940 2487 + 0.693205
NA Francci3_0797 hypothetical proteinchromosome CDS928935 282 - 0.659574
NA Francci3_0611 ribosomal protein L17chromosome CDS694538 621 + 0.718196
NA Francci3_0571 ribosomal protein L10chromosome CDS661056 564 + 0.714539
NA Francci3_3603 ribosomal protein L32chromosome CDS4305186 171 - 0.695906
NA Francci3_0579 translation elongation factor Gchromosome CDS673649 2097 + 0.663329
NA Francci3_3562 translation initiation factor IF-2chromosome CDS4258840 3189 - 0.729382
NA Francci3_3594 ribosomal protein S16chromosome CDS4292100 447 - 0.691275
NA Francci3_3270 GCN5-related N-acetyltransferasechromosome CDS3871887 600 - 0.688333
NA Francci3_0587 ribosomal protein L22chromosome CDS680619 426 + 0.725352
NA Francci3_3501 putative PAS/PAC sensor proteinchromosome CDS4174895 3678 - 0.748776
NA Francci3_0175 Amidasechromosome CDS206008 1500 - 0.732
NA Francci3_0126 hypothetical proteinchromosome CDS155958 966 - 0.65528
NA Francci3_0791 peptide chain release factor 2chromosome CDS920761 1101 + 0.6703
NA Francci3_3719 modification methylase, HemK familychromosome CDS4451603 1017 - 0.764012
NA Francci3_0586 ribosomal protein S19chromosome CDS680345 282 + 0.648936
NA Francci3_0570 ribosomal protein L1chromosome CDS659890 780 + 0.661538
NA Francci3_2642 Cysteine--tRNA ligasechromosome CDS3117228 1395 - 0.703943
NA Francci3_0605 translation initiation factor IF-1chromosome CDS690977 222 + 0.644144
NA Francci3_3555 Polyribonucleotide nucleotidyltransferasechromosome CDS4251773 2190 - 0.69726
NA Francci3_3180 ribosomal protein L20chromosome CDS3769614 381 - 0.703412
NA Francci3_4452 hypothetical proteinchromosome CDS5322472 276 + 0.673913
NA Francci3_0593 ribosomal protein L24chromosome CDS683438 327 + 0.64526
NA Francci3_0846 tRNA/rRNA methyltransferasechromosome CDS987910 951 + 0.744479
NA Francci3_0674 hypothetical proteinchromosome CDS770300 285 - 0.673684
NA Francci3_0578 ribosomal protein S7chromosome CDS673172 471 + 0.675159
NA Francci3_3871 conserved hypothetical proteinchromosome CDS4633497 1077 - 0.694522
NA Francci3_3378 tRNA-guanine transglycosylases, various specificitieschromosome CDS4008586 1161 + 0.707149
NA Francci3_3560 ribosome-binding factor Achromosome CDS4257864 507 - 0.706114
NA Francci3_3718 Sua5/YciO/YrdC/YwlCchromosome CDS4450918 651 - 0.723502
NA Francci3_1589 RNA-binding S4chromosome CDS1905653 411 - 0.77129
NA Francci3_0591 ribosomal protein S17chromosome CDS682682 309 + 0.669903
NA Francci3_0597 ribosomal protein L6chromosome CDS685172 537 + 0.679702
NA Francci3_0594 ribosomal protein L5chromosome CDS683806 600 + 0.673333
NA Francci3_2632 tRNA (adenine-N(1)-)-methyltransferasechromosome CDS3106025 1035 - 0.729469
NA Francci3_4323 conserved hypothetical proteinchromosome CDS5164848 438 - 0.723744
NA Francci3_3556 ribosomal protein S15chromosome CDS4254248 270 - 0.644444
NA Francci3_3372 ribosomal RNA methyltransferasechromosome CDS4002328 855 + 0.723977
NA Francci3_3720 peptide chain release factor 1chromosome CDS4452616 1074 - 0.709497
NA Francci3_2679 plasmid stabilization systemchromosome CDS3166260 288 + 0.652778
NA Francci3_3964 ribosomal RNA adenine methylase transferasechromosome CDS4744279 756 - 0.769841
NA Francci3_3591 tRNA (guanine-N1)-methyltransferasechromosome CDS4290344 813 - 0.691267
NA Francci3_4244 formylmethionine deformylasechromosome CDS5065287 1650 + 0.690303
NA Francci3_4520 ribosomal protein S18chromosome CDS5395420 237 - 0.632911
NA Francci3_3592 16S rRNA processing protein RimMchromosome CDS4291279 540 - 0.7
NA Francci3_0372 hypothetical proteinchromosome CDS438337 333 - 0.654655
NA Francci3_3408 threonyl-tRNA synthetasechromosome CDS4043702 1317 - 0.718299
NA Francci3_2403 Amidasechromosome CDS2782511 1920 - 0.756771
NA Francci3_0737 Nucleotidyl transferasechromosome CDS852426 1074 + 0.718808
NA Francci3_4251 cysteinyl-tRNA synthetasechromosome CDS5073632 1575 - 0.704762
NA Francci3_0583 ribosomal protein L4/L1echromosome CDS678341 738 + 0.722222
NA Francci3_1563 Nucleotidyl transferasechromosome CDS1875466 774 + 0.621447
NA Francci3_0088 2',5' RNA ligasechromosome CDS107420 684 + 0.760234
NA Francci3_0764 sigma 54 modulation protein/ribosomal protein S30EAchromosome CDS889293 804 + 0.701493
NA Francci3_2660 Peptide deformylasechromosome CDS3141254 693 - 0.737374
NA Francci3_3051 GCN5-related N-acetyltransferasechromosome CDS3617620 585 + 0.702564
NA Francci3_3645 glutamyl-tRNA(Gln) amidotransferase, C subunitchromosome CDS4354386 297 - 0.723906
NA Francci3_3064 conserved hypothetical proteinchromosome CDS3633882 318 + 0.713836
NA Francci3_1382 seryl-tRNA synthetasechromosome CDS1661119 1263 + 0.69042
NA Francci3_0589 ribosomal protein L16chromosome CDS681994 417 + 0.669065