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2024-05-07 09:52:13

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Novosphingobium aromaticivorans DSM 12444, DSM 12444

Number of genes found: 167

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Novosphingobium aromaticivorans DSM 12444, DSM 12444
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Saro_1246 translation elongation factor Gchromosome CDS1294541 2073 + 0.622769
NA Saro_0237 DEAD/DEAH box helicase-likechromosome CDS244870 1497 - 0.698731
NA Saro_3188 ribosomal protein L33chromosome CDS3408604 168 + 0.559524
NA Saro_2381 cysteinyl-tRNA synthetasechromosome CDS2533879 1482 - 0.650472
NA Saro_0605 Amidasechromosome CDS649374 1770 - 0.69774
NA Saro_2529 ribosomal protein S13chromosome CDS2732361 369 - 0.609756
NA Saro_2835 ribosomal protein S21chromosome CDS3062508 207 - 0.603865
NA Saro_1401 MiaB-like tRNA modifying enzymechromosome CDS1443487 1197 - 0.655806
NA Saro_1267 ribosomal protein L30chromosome CDS1307276 177 + 0.632768
NA Saro_1244 ribosomal protein S12chromosome CDS1293513 372 + 0.647849
NA Saro_0575 ribosomal protein L34chromosome CDS623203 135 + 0.725926
NA Saro_3215 leucyl-tRNA synthetasechromosome CDS3431111 2547 + 0.648214
NA Saro_1408 ribosomal protein L19chromosome CDS1450745 369 + 0.609756
NA Saro_3090 Endoribonuclease L-PSPchromosome CDS3311225 387 + 0.609819
NA Saro_1380 ribosomal protein L31chromosome CDS1427743 225 + 0.617778
NA Saro_2636 SmpA/OmlAchromosome CDS2872738 495 - 0.656566
NA Saro_1203 tRNA/rRNA methyltransferasechromosome CDS1251369 456 + 0.677632
NA Saro_2538 translation initiation factor IF-3chromosome CDS2740284 522 + 0.588123
NA Saro_2896 Peptide deformylasechromosome CDS3115464 567 + 0.640212
NA Saro_3285 ribosomal protein S9chromosome CDS3504255 543 - 0.686925
NA Saro_2833 glutamyl-tRNA(Gln) amidotransferase, C subunitchromosome CDS3061357 303 - 0.669967
NA Saro_2901 tRNA/rRNA methyltransferasechromosome CDS3119359 804 - 0.662935
NA Saro_0931 GCN5-related N-acetyltransferasechromosome CDS979898 570 + 0.710526
NA Saro_0122 RNA-binding S4chromosome CDS125747 291 + 0.642612
NA Saro_0576 ribonuclease P protein componentchromosome CDS623374 489 + 0.683027
NA Saro_1268 ribosomal protein L15chromosome CDS1307555 579 + 0.645941
NA Saro_2526 ribosomal protein L17chromosome CDS2730199 426 - 0.65493
NA Saro_1258 ribosomal protein S17chromosome CDS1303287 270 + 0.614815
NA Saro_0126 Sua5/YciO/YrdC/YwlCchromosome CDS128212 948 - 0.666667
NA Saro_2837 Pseudouridine synthase, RluDchromosome CDS3063296 1311 + 0.709382
NA Saro_0478 GCN5-related N-acetyltransferasechromosome CDS521569 519 + 0.693642
NA Saro_1251 ribosomal L23 proteinchromosome CDS1300094 303 + 0.60066
NA Saro_1753 Fmu (Sun)chromosome CDS1848137 1188 + 0.685185
NA Saro_1259 ribosomal protein L14chromosome CDS1303671 369 + 0.636856
NA Saro_2368 ribosomal protein L32chromosome CDS2516040 180 - 0.633333
NA Saro_1262 ribosomal protein S14chromosome CDS1304959 306 + 0.624183
NA Saro_2260 tRNA delta(2)-isopentenylpyrophosphate transferasechromosome CDS2399076 846 + 0.683215
NA Saro_2031 glutamyl-tRNA synthetasechromosome CDS2165934 1464 + 0.653005
NA Saro_1370 translation elongation factor Tschromosome CDS1417409 927 + 0.64617
NA Saro_0204 threonyl-tRNA synthetasechromosome CDS209688 1995 - 0.657644
NA Saro_1253 ribosomal protein S19chromosome CDS1301249 279 + 0.612903
NA Saro_1415 ribosomal protein S18chromosome CDS1458408 225 - 0.626667
NA Saro_1110 methionine aminopeptidase, type Ichromosome CDS1157759 852 - 0.658451
NA Saro_0846 conserved hypothetical proteinchromosome CDS897013 1416 - 0.658192
NA Saro_1372 ribosome recycling factorchromosome CDS1419217 558 + 0.630824
NA Saro_2585 translation initiation factor IF-1chromosome CDS2791267 258 - 0.620155
NA Saro_2116 Aminoacyl-tRNA hydrolasechromosome CDS2254975 576 + 0.609375
NA Saro_2250 Queuosine biosynthesis proteinchromosome CDS2390270 1029 - 0.661808
NA Saro_2490 translation initiation factor IF-2chromosome CDS2690002 2628 - 0.673516
NA Saro_0930 ribosomal protein L27chromosome CDS979395 270 + 0.659259
NA Saro_1264 ribosomal protein L6chromosome CDS1305670 534 + 0.629214
NA Saro_1958 translation elongation factor Pchromosome CDS2076522 564 - 0.60461
NA Saro_3159 hypothetical proteinchromosome CDS3371606 1095 + 0.687671
NA Saro_2584 DEAD/DEAH box helicase-likechromosome CDS2789231 1773 + 0.717992
NA Saro_1263 ribosomal protein S8chromosome CDS1305275 396 + 0.64899
NA Saro_2360 lysyl-tRNA synthetasechromosome CDS2506853 1605 - 0.62866
NA Saro_2243 tRNA/rRNA methyltransferasechromosome CDS2384860 756 + 0.669312
NA Saro_3286 ribosomal protein L13chromosome CDS3504800 480 - 0.635417
NA Saro_1406 16S rRNA processing protein RimMchromosome CDS1449504 501 + 0.658683
NA Saro_0288 peptide chain release factor 1chromosome CDS309482 1065 - 0.693897
NA Saro_1939 methionyl-tRNA synthetasechromosome CDS2053996 1566 - 0.587484
NA Saro_2318 ribonuclease, Rne/Rng familychromosome CDS2460343 2808 + 0.672721
NA Saro_1915 gid proteinchromosome CDS2026593 1371 - 0.637491
NA Saro_2894 methionyl-tRNA formyltransferasechromosome CDS3113845 906 - 0.698676
NA Saro_1364 RNA methyltransferase TrmH, group 3chromosome CDS1412258 816 - 0.685049
NA Saro_2208 putative methylase/helicasechromosome CDS2348519 4242 - 0.639321
NA Saro_0448 class I peptide chain release factor domainchromosome CDS491021 414 + 0.669082
NA Saro_1265 ribosomal protein L18chromosome CDS1306203 351 + 0.680912
NA Saro_3251 3'-5' exonucleasechromosome CDS3471052 618 - 0.650485
NA Saro_1602 beta-lactamase-likechromosome CDS1666217 1608 + 0.643657
NA Saro_0833 ribosomal protein L11chromosome CDS883820 432 + 0.62037
NA Saro_2081 glutathione synthetasechromosome CDS2219246 948 - 0.646624
NA Saro_1405 ribosomal protein S16chromosome CDS1449064 438 + 0.671233
NA Saro_2245 RNA-binding S4chromosome CDS2386109 612 + 0.627451
NA Saro_0685 ribosomal protein L35chromosome CDS724127 204 + 0.607843
NA Saro_2486 GCN5-related N-acetyltransferasechromosome CDS2687810 555 - 0.677477
NA Saro_1248 ribosomal protein S10chromosome CDS1298066 312 + 0.615385
NA Saro_3096 Fmu (Sun)chromosome CDS3315639 1260 - 0.730159
NA Saro_0223 CMP/dCMP deaminase, zinc-bindingchromosome CDS231976 456 + 0.723684
NA Saro_2314 peptide chain release factor 2chromosome CDS2454382 1128 - 0.662234
NA Saro_1254 ribosomal protein L22chromosome CDS1301527 378 + 0.637566
NA Saro_0007 hypothetical proteinchromosome CDS5813 399 + 0.654135
NA Saro_1292 DEAD/DEAH box helicase-likechromosome CDS1335055 1395 + 0.660932
NA Saro_1337 ribonuclease Dchromosome CDS1377746 1218 - 0.638752
NA Saro_1089 arginyl-tRNA synthetasechromosome CDS1131811 1749 + 0.647799
NA Saro_2111 Glycine--tRNA ligasechromosome CDS2248829 2217 - 0.647271
NA Saro_2112 Glycine--tRNA ligasechromosome CDS2251230 951 - 0.633018
NA Saro_2184 Type IV secretory pathway VirD4 components-likechromosome CDS2325969 2397 - 0.632874
NA Saro_3057 Amidasechromosome CDS3272946 1542 + 0.675097
NA Saro_2247 queuine tRNA-ribosyltransferasechromosome CDS2387062 1125 - 0.657778
NA Saro_2633 GCN5-related N-acetyltransferasechromosome CDS2870264 477 - 0.654088
NA Saro_2484 tRNA pseudouridine synthase Bchromosome CDS2686189 915 - 0.646995
NA Saro_1177 hypothetical proteinchromosome CDS1216809 198 - 0.611111
NA Saro_1277 elongation factor G, domain IVchromosome CDS1316192 2061 - 0.678797
NA Saro_2669 hemolysin Achromosome CDS2906949 756 - 0.674603
NA Saro_2115 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5chromosome CDS2254216 615 + 0.642276
NA Saro_0447 Pseudouridylate synthasechromosome CDS490351 669 + 0.668161
NA Saro_0929 ribosomal protein L21chromosome CDS979072 297 + 0.632997
NA Saro_1256 ribosomal protein L16chromosome CDS1302625 435 + 0.671264
NA Saro_1257 ribosomal protein L29chromosome CDS1303070 207 + 0.618357
NA Saro_1266 ribosomal protein S5chromosome CDS1306556 714 + 0.672269
NA Saro_1252 ribosomal protein L2chromosome CDS1300406 837 + 0.643967
NA Saro_2121 conserved hypothetical protein 92chromosome CDS2260265 1101 + 0.641235
NA Saro_3046 Pseudouridine synthase, RluDchromosome CDS3261197 999 - 0.670671
NA Saro_1742 ribosomal L11 methyltransferasechromosome CDS1836751 957 - 0.712644
NA Saro_0548 asparaginasechromosome CDS599767 492 + 0.654472
NA Saro_3338 ribosomal protein S20chromosome CDS3560825 261 + 0.666667
NA Saro_0967 glutamyl-tRNA synthetasechromosome CDS1013326 1329 - 0.687735
NA Saro_0029 ribosomal protein L10chromosome CDS30749 513 + 0.651072
NA Saro_2528 ribosomal protein S11chromosome CDS2731923 390 - 0.658974
NA Saro_1250 ribosomal protein L4/L1echromosome CDS1299478 624 + 0.636218
NA Saro_1245 ribosomal protein S7chromosome CDS1293986 471 + 0.630573
NA Saro_1407 tRNA (guanine-N1)-methyltransferasechromosome CDS1450001 741 + 0.65722
NA Saro_0222 ribosomal protein L28chromosome CDS231568 285 - 0.614035
NA Saro_0121 helicase-likechromosome CDS123162 2568 + 0.65771
NA Saro_0112 sigma 54 modulation protein/ribosomal protein S30EAchromosome CDS115237 582 - 0.618557
NA Saro_0982 tRNA-i(6)A37 modification enzyme MiaBchromosome CDS1025606 1332 - 0.664414
NA Saro_1369 ribosomal protein S2chromosome CDS1416528 756 + 0.656085
NA Saro_1963 hypothetical proteinchromosome CDS2081521 366 + 0.622951
NA Saro_3113 Pseudouridine synthase, Rsuchromosome CDS3327559 549 - 0.690346
NA Saro_1247 translation elongation factor Tuchromosome CDS1296706 1191 + 0.633921
NA Saro_0289 histidyl-tRNA synthetasechromosome CDS310668 1260 - 0.67619
NA Saro_2100 tyrosyl-tRNA synthetasechromosome CDS2236438 1230 + 0.651219
NA Saro_0834 ribosomal protein L1chromosome CDS884256 702 + 0.652422
NA Saro_0043 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS46499 1155 + 0.697836
NA Saro_2583 conserved hypothetical proteinchromosome CDS2788082 912 - 0.663377
NA Saro_2846 valyl-tRNA synthetasechromosome CDS3070572 2715 + 0.652302
NA Saro_3105 Endoribonuclease L-PSPchromosome CDS3322693 468 - 0.688034
NA Saro_3273 ribosomal protein L36chromosome CDS3493829 126 - 0.619048
NA Saro_2831 glutamyl-tRNA(Gln) amidotransferase, B subunitchromosome CDS3058378 1494 - 0.65328
NA Saro_2483 ribosomal protein S15chromosome CDS2685914 270 - 0.577778
NA Saro_1058 translation initiation factor IF-1chromosome CDS1099437 297 - 0.62963
NA Saro_0886 dimethyladenosine transferasechromosome CDS941886 822 - 0.670316
NA Saro_2893 tRNA pseudouridine synthase Achromosome CDS3113088 765 - 0.665359
NA Saro_1926 Dihydrouridine synthase TIM-barrel protein nifR3chromosome CDS2037905 1056 + 0.638258
NA Saro_3259 isoleucyl-tRNA synthetasechromosome CDS3478150 2907 - 0.639491
NA Saro_1999 Nucleotidyl transferasechromosome CDS2132808 723 - 0.662517
NA Saro_1255 ribosomal protein S3chromosome CDS1301907 696 + 0.636494
NA Saro_1279 alanyl-tRNA synthetasechromosome CDS1319280 2646 + 0.666667
NA Saro_0551 glutamyl-tRNA synthetase, class Icchromosome CDS602665 846 + 0.687943
NA Saro_1950 prolyl-tRNA synthetasechromosome CDS2068026 1548 - 0.635013
NA Saro_0686 ribosomal protein L20chromosome CDS724344 363 + 0.619835
NA Saro_0690 peptide chain release factor 3chromosome CDS729333 1524 + 0.638451
NA Saro_1260 ribosomal protein L24chromosome CDS1304039 318 + 0.644654
NA Saro_0588 tryptophanyl-tRNA synthetasechromosome CDS633608 1020 + 0.657843
NA Saro_0472 ribosomal RNA methyltransferase RrmJ/FtsJchromosome CDS514536 669 - 0.654709
NA Saro_0030 ribosomal protein L7/L12chromosome CDS31331 372 + 0.610215
NA Saro_1338 aspartyl-tRNA synthetasechromosome CDS1379139 1782 + 0.65881
NA Saro_0224 ribonuclease T2chromosome CDS232442 702 - 0.705128
NA Saro_1787 (Uracil-5)-methyltransferasechromosome CDS1885409 1206 + 0.689055
NA Saro_2482 Polyribonucleotide nucleotidyltransferasechromosome CDS2683433 2319 - 0.635619
NA Saro_0688 phenylalanyl-tRNA synthetase, alpha subunitchromosome CDS725769 1101 + 0.650318
NA Saro_1414 ribosomal protein L9chromosome CDS1457796 600 - 0.628333
NA Saro_2832 glutamyl-tRNA(Gln) amidotransferase, A subunitchromosome CDS3059873 1485 - 0.686869
NA Saro_0067 putative mRNA 3-end processing factorchromosome CDS68777 1074 + 0.6946
NA Saro_0287 modification methylase, HemK familychromosome CDS308535 876 - 0.696347
NA Saro_2491 protein of unknown function DUF448chromosome CDS2692635 735 - 0.670748
NA Saro_1297 Pseudouridine synthase, Rsuchromosome CDS1341718 813 - 0.694957
NA Saro_2488 ribosome-binding factor Achromosome CDS2688951 408 - 0.644608
NA Saro_1322 ribosomal protein S1chromosome CDS1365649 1701 - 0.654321
NA Saro_1261 ribosomal protein L5chromosome CDS1304349 582 + 0.604811
NA Saro_1021 Polynucleotide adenylyltransferase regionchromosome CDS1059940 1203 - 0.679967
NA Saro_0850 seryl-tRNA synthetasechromosome CDS900738 1281 - 0.667447
NA Saro_1249 ribosomal protein L3chromosome CDS1298719 756 + 0.640212
NA Saro_2061 ribonuclease PHchromosome CDS2201499 684 + 0.666667
NA Saro_1416 ribosomal protein S6chromosome CDS1458636 363 - 0.625344
NA Saro_0037 GCN5-related N-acetyltransferasechromosome CDS39195 546 - 0.673993