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2024-05-01 10:59:29

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Synechococcus sp. JA-3-3Ab, JA-3-3Ab

Number of genes found: 150

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Synechococcus sp. JA-3-3Ab, JA-3-3Ab
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA CYA_2176 conserved hypothetical proteinchromosome CDS2191994 720 - 0.629167
NA CYA_2627 RNA pseudouridine synthase family proteinchromosome CDS2643684 627 + 0.649123
NA CYA_1953 RNA methyltransferase, TrmH family, group 1chromosome CDS1964218 810 - 0.630864
NA CYA_2447 hypothetical proteinchromosome CDS2457021 903 + 0.613511
NA CYA_2085 conserved hypothetical proteinchromosome CDS2103444 846 + 0.617021
NA CYA_1113 3'-5' exonuclease family proteinchromosome CDS1142039 633 - 0.617694
NA CYA_2049 metallo-beta-lactamase family proteinchromosome CDS2067865 1767 - 0.654216
NA CYA_0773 RNA pseudouridine synthase family proteinchromosome CDS780166 819 - 0.616606
NA CYA_1071 RNA methyltransferase, TrmH family, group 2chromosome CDS1087802 456 + 0.622807
NA CYA_1061 conserved hypothetical proteinchromosome CDS1077738 558 + 0.634409
NA CYA_1227 putative ribosomal protein S1chromosome CDS1237546 915 + 0.598907
NA CYA_1262 conserved hypothetical proteinchromosome CDS1277778 1146 + 0.641361
NA CYA_0291 RNA methyltransferase, TrmH family, group 3chromosome CDS297419 1065 - 0.629108
NA CYA_1666 Sua5/YciO/YrdC/YwlC family proteinchromosome CDS1669031 1101 + 0.648501
NA CYA_2595 putative endoribonuclease L-PSPchromosome CDS2617089 375 - 0.613333
NA CYA_2796 methyltransferase, HemK familychromosome CDS2815492 858 + 0.648019
NA CYA_0821 ribonuclease, Rne/Rng familychromosome CDS834601 2136 + 0.631554
NA CYA_1093 RNA methyltransferase, TrmH familychromosome CDS1114734 813 - 0.643296
NA CYA_2525 putative lipoproteinchromosome CDS2545023 1386 + 0.515873
NA CYA_1556 hemolysin Achromosome CDS1565775 828 + 0.600242
NA CYA_2376 Sua5/YciO/YrdC/YwlC family proteinchromosome CDS2386313 708 - 0.605932
NA CYA_0024 GTP-binding protein YchFchromosome CDS22084 1092 - 0.60989
NA CYA_0052 conserved hypothetical proteinchromosome CDS51170 501 - 0.606786
NA CYA_0740 pseudouridine synthase, RluA familychromosome CDS745386 933 - 0.65059
NA CYA_1032 polyA polymerase family proteinchromosome CDS1051100 1338 - 0.679372
NA CYA_1231 nucleotidyl transferase family proteinchromosome CDS1242268 1122 - 0.595365
NA CYA_2271 conserved hypothetical proteinchromosome CDS2279868 633 - 0.63981
NA CYA_2166 Piwi domain proteinchromosome CDS2177856 2196 - 0.494991
NA CYA_1650 dihydrouridine synthase family proteinchromosome CDS1648460 1041 - 0.585014
NA CYA_0667 nucleotidyl transferase family proteinchromosome CDS677064 948 - 0.620253
NA CYA_1954 putative lipoproteinchromosome CDS1965094 576 + 0.635417
NA CYA_0324 2',5' RNA ligase family proteinchromosome CDS343377 603 - 0.616915
NA CYA_1908 hypothetical proteinchromosome CDS1917679 1059 + 0.541076
NA CYA_2754 cytidine/deoxycytidylate deaminase zinc-binding domain proteinchromosome CDS2775738 525 - 0.689524
NA CYA_1000 hypothetical proteinchromosome CDS1013568 399 + 0.576441
NA CYA_1396 conserved hypothetical proteinchromosome CDS1401835 372 + 0.637097
NA CYA_2100 amidohydrolase, AtzE familychromosome CDS2117544 1401 - 0.64454
NA CYA_0684 nucleotidyl transferase family proteinchromosome CDS689690 960 - 0.58125
alaS CYA_1881 alanyl-tRNA synthetasechromosome CDS1885069 2652 - 0.636501
argS CYA_2732 arginyl-tRNA synthetasechromosome CDS2747913 1797 - 0.603784
aspS CYA_1681 aspartyl-tRNA synthetasechromosome CDS1680199 1806 + 0.63289
cysS CYA_1896 cysteinyl-tRNA synthetasechromosome CDS1905549 1521 + 0.619987
def-1 CYA_0120 peptide deformylasechromosome CDS115188 597 - 0.606365
def-2 CYA_0278 peptide deformylasechromosome CDS285108 528 + 0.636364
efp CYA_1272 translation elongation factor Pchromosome CDS1286822 558 - 0.564516
fmt CYA_1691 methionyl-tRNA formyltransferasechromosome CDS1690555 969 - 0.654283
frr-1 CYA_0703 ribosome recycling factorchromosome CDS711147 549 - 0.579235
frr-2 CYA_1862 ribosome recycling factorchromosome CDS1866057 549 + 0.584699
fusA CYA_1301 translation elongation factor Gchromosome CDS1309620 2133 + 0.596343
gatA CYA_1419 glutamyl-tRNA(Gln) amidotransferase, A subunitchromosome CDS1427888 1530 - 0.632026
gatB CYA_0359 glutamyl-tRNA(Gln) amidotransferase, B subunitchromosome CDS376702 1473 - 0.60964
gatC CYA_1343 glutamyl-tRNA(Gln) amidotransferase, C subunitchromosome CDS1355156 294 + 0.571429
gid CYA_2686 gid proteinchromosome CDS2700632 1356 + 0.64823
gltX CYA_2715 glutamyl-tRNA synthetasechromosome CDS2734803 1440 - 0.616667
glyQ CYA_0584 glycyl-tRNA synthetase, alpha subunitchromosome CDS595616 987 - 0.596758
glyS CYA_2862 glycyl-tRNA synthetase, beta subunitchromosome CDS2879174 2193 + 0.631099
gshB CYA_2216 glutathione synthasechromosome CDS2229715 948 + 0.584388
hisS CYA_2495 histidyl-tRNA synthetasechromosome CDS2504482 1260 + 0.646825
ileS CYA_1703 isoleucyl-tRNA synthetasechromosome CDS1709018 2811 - 0.62042
infA CYA_1157 translation initiation factor IF-1chromosome CDS1180726 225 - 0.551111
infB CYA_2338 translation initiation factor IF-2chromosome CDS2343138 3096 + 0.653747
infC CYA_2144 translation initiation factor IF-3chromosome CDS2156949 558 + 0.578853
ksgA CYA_0917 dimethyladenosine transferasechromosome CDS926631 840 + 0.653571
leuS CYA_1256 leucyl-tRNA synthetasechromosome CDS1270024 2622 - 0.62357
lysS CYA_0333 lysyl-tRNA synthetasechromosome CDS350698 1527 - 0.64964
map-1 CYA_0844 methionine aminopeptidase, type Ichromosome CDS852908 789 + 0.637516
map-2 CYA_1158 methionine aminopeptidase, type Ichromosome CDS1181081 774 - 0.640827
metG CYA_1398 methionyl-tRNA synthetasechromosome CDS1402734 1551 - 0.604126
miaA CYA_0081 tRNA delta(2)-isopentenylpyrophosphate transferasechromosome CDS80829 1023 - 0.647116
miaB CYA_2897 tRNA-i(6)A37 thiotransferase enzyme MiaBchromosome CDS2921618 1362 - 0.637298
miaE CYA_2185 tRNA-(MS[2]IO[6]A)-hydroxylasechromosome CDS2204738 606 - 0.643564
pheS CYA_2045 phenylalanyl-tRNA synthetase, alpha subunitchromosome CDS2064896 1002 + 0.603792
pnpA CYA_2218 polyribonucleotide nucleotidyltransferasechromosome CDS2233250 2139 - 0.613371
prfA CYA_1445 peptide chain release factor 1chromosome CDS1452529 1086 - 0.617864
prmA CYA_2493 ribosomal protein L11 methyltransferasechromosome CDS2502828 786 + 0.637405
proS CYA_2339 prolyl-tRNA synthetasechromosome CDS2346336 1830 + 0.618579
psaE CYA_0204 photosystem I reaction center subunit IVchromosome CDS209208 222 - 0.545045
pth CYA_1253 peptidyl-tRNA hydrolasechromosome CDS1266259 678 + 0.609145
queA CYA_1476 S-adenosylmethionine:tRNAribosyltransferase-isom erasechromosome CDS1483225 1191 + 0.6356
rbfA CYA_0776 ribosome-binding factor Achromosome CDS781898 450 - 0.613333
rimM CYA_1525 16S rRNA processing protein RimMchromosome CDS1537657 561 - 0.627451
rnpA CYA_2904 ribonuclease Pchromosome CDS2931984 381 - 0.598425
rph CYA_2643 ribonuclease PHchromosome CDS2658593 729 + 0.626886
rplA CYA_1780 ribosomal protein L1chromosome CDS1783976 711 + 0.594937
rplB CYA_1175 ribosomal protein L2chromosome CDS1190302 885 - 0.646328
rplC CYA_1178 ribosomal protein L3chromosome CDS1192571 645 - 0.64031
rplD CYA_1177 ribosomal protein L4chromosome CDS1191539 981 - 0.621814
rplE CYA_1166 ribosomal protein L5chromosome CDS1186341 543 - 0.565378
rplF CYA_1164 ribosomal protein L6chromosome CDS1185304 546 - 0.593407
rplI CYA_1551 ribosomal protein L9chromosome CDS1561070 462 - 0.582251
rplJ CYA_1782 ribosomal protein L10chromosome CDS1785005 564 + 0.602837
rplK CYA_1779 ribosomal protein L11chromosome CDS1783451 426 + 0.596244
rplL CYA_1784 ribosomal protein L7/L12chromosome CDS1785642 414 + 0.591787
rplM CYA_1448 ribosomal protein L13chromosome CDS1454394 456 - 0.614035
rplN CYA_1168 ribosomal protein L14chromosome CDS1187338 369 - 0.607046
rplO CYA_1161 ribosomal protein L15chromosome CDS1183881 474 - 0.660338
rplP CYA_1171 ribosomal protein L16chromosome CDS1188208 477 - 0.589099
rplQ CYA_1450 ribosomal protein L17chromosome CDS1455768 351 - 0.669516
rplR CYA_1163 ribosomal protein L18chromosome CDS1184933 369 - 0.639566
rplS CYA_1619 ribosomal protein L19chromosome CDS1622498 384 - 0.570312
rplT CYA_2812 ribosomal protein L20chromosome CDS2831330 357 + 0.613445
rplU CYA_2052 ribosomal protein L21chromosome CDS2071840 408 - 0.60049
rplV CYA_1173 ribosomal protein L22chromosome CDS1189528 372 - 0.637097
rplW CYA_1176 ribosomal protein L23chromosome CDS1191247 300 - 0.606667
rplX CYA_1167 ribosomal protein L24chromosome CDS1186940 399 - 0.558897
rpmA CYA_2051 ribosomal protein L27chromosome CDS2071510 270 - 0.614815
rpmB CYA_2214 ribosomal protein L28chromosome CDS2228458 237 + 0.561181
rpmC CYA_1170 ribosomal protein L29chromosome CDS1187954 237 - 0.57384
rpmE CYA_1446 ribosomal protein L31chromosome CDS1453685 222 - 0.54955
rpmG CYA_1652 ribosomal protein L33chromosome CDS1649809 195 - 0.538462
rpmH CYA_2905 ribosomal protein L34chromosome CDS2932455 141 - 0.652482
rpmI CYA_2811 ribosomal protein L35chromosome CDS2831007 201 + 0.60199
rpmJ CYA_1454 ribosomal protein L36chromosome CDS1458381 117 - 0.632479
rpsA CYA_2379 ribosomal protein S1chromosome CDS2388710 972 + 0.595679
rpsB CYA_1638 ribosomal protein S2chromosome CDS1638377 804 + 0.58209
rpsC CYA_1172 ribosomal protein S3chromosome CDS1188740 747 - 0.621151
rpsD CYA_1519 ribosomal protein S4chromosome CDS1529634 612 - 0.581699
rpsE CYA_1162 ribosomal protein S5chromosome CDS1184378 537 - 0.623836
rpsF CYA_2875 ribosomal protein S6chromosome CDS2892660 291 + 0.563574
rpsG CYA_1300 ribosomal protein S7chromosome CDS1308993 471 + 0.609342
rpsH CYA_1165 ribosomal protein S8chromosome CDS1185876 405 - 0.587654
rpsI CYA_1447 ribosomal protein S9chromosome CDS1453984 414 - 0.649758
rpsJ CYA_1303 ribosomal protein S10chromosome CDS1313098 318 + 0.569182
rpsK CYA_1452 ribosomal protein S11chromosome CDS1457309 387 - 0.612403
rpsL CYA_1299 ribosomal protein S12chromosome CDS1308542 408 + 0.60049
rpsM CYA_1453 ribosomal protein S13chromosome CDS1457784 384 - 0.640625
rpsN CYA_1114 ribosomal protein S14chromosome CDS1142911 306 - 0.633987
rpsO CYA_2788 ribosomal protein S15chromosome CDS2807749 276 - 0.536232
rpsP CYA_2279 ribosomal protein S16chromosome CDS2285985 468 + 0.638889
rpsQ CYA_1169 ribosomal protein S17chromosome CDS1187703 252 - 0.531746
rpsR CYA_1651 ribosomal protein S18chromosome CDS1649564 216 - 0.550926
rpsS CYA_1174 ribosomal protein S19chromosome CDS1189942 282 - 0.567376
rpsT CYA_0925 ribosomal protein S20chromosome CDS935393 303 + 0.574257
rpsU CYA_0188 ribosomal protein S21chromosome CDS188130 186 - 0.591398
rumA CYA_0025 23S rRNA (uracil-5-)-methyltransferase RumAchromosome CDS23329 1395 - 0.62509
serS CYA_0247 seryl-tRNA synthetasechromosome CDS251123 1308 + 0.631498
sun CYA_1094 ribosomal RNA small subunit methyltransferase Bchromosome CDS1115580 1347 - 0.651076
tgt CYA_2841 queuine tRNA-ribosyltransferasechromosome CDS2859006 1104 + 0.595109
thrS CYA_2433 threonyl-tRNA synthetasechromosome CDS2441939 1812 + 0.593819
trmD CYA_1775 tRNA (guanine-N1)-methyltransferasechromosome CDS1781213 762 + 0.627297
trmU CYA_0046 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS44778 1113 - 0.626235
trpS CYA_1340 tryptophanyl-tRNA synthetasechromosome CDS1353066 996 - 0.594378
truA CYA_1449 tRNA pseudouridine synthase Achromosome CDS1454899 864 - 0.65625
truB CYA_1338 tRNA pseudouridine synthase Bchromosome CDS1351048 900 - 0.65
tsf CYA_1639 translation elongation factor Tschromosome CDS1639356 849 + 0.568905
tuf CYA_1302 translation elongation factor Tuchromosome CDS1311775 1230 + 0.610569
tyrS CYA_2096 tyrosyl-tRNA synthetasechromosome CDS2111265 1254 - 0.61882
valS CYA_0512 valyl-tRNA synthetasechromosome CDS530063 2739 - 0.633808
yfiA CYA_2445 ribosomal subunit interface proteinchromosome CDS2454482 576 - 0.564236
yliG CYA_2323 MiaB tRNA modifying enzyme-like proteinchromosome CDS2324913 1320 + 0.643182