TitleGenColors Logo
spacer
Home spacerGenomes
spacerMethods
spacerDocumentation spacerContactspacer spacerLeibniz FLI
spacer
QuickSearch
2024-05-04 08:28:20

Gene list

Applied filters:

COG category: Translation, ribosomal structure and biogenesis
Organism: Pseudomonas putida KT2440, KT2440

Number of genes found: 190

Free access
Sort by:

 

Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Pseudomonas putida KT2440, KT2440
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA PP0566 translation initiation factor SUI1chromosome CDS658431 372 + 0.653226
NA PP0911 hypothetical proteinchromosome CDS1053474 387 - 0.568475
NA PP1191 S4 domain proteinchromosome CDS1365987 711 - 0.651196
NA PP0721 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5chromosome CDS838042 654 - 0.587156
NA PP2956 ribosomal protein S6 modification protein-related proteinchromosome CDS3359683 1581 - 0.611006
NA PP4879 RNA methyltransferase, TrmH family, group 3chromosome CDS5545734 747 - 0.64257
NA PP1921 hypothetical proteinchromosome CDS2166934 1164 + 0.502577
NA PP4499 Sua5/YciO/YrdC/YwlC family proteinchromosome CDS5114280 666 - 0.615616
NA PP1981 NifR3/Smm1 family proteinchromosome CDS2244452 972 + 0.650206
NA PP1199 conserved hypothetical proteinchromosome CDS1373616 336 - 0.547619
NA PP4694 tRNA synthetase domain proteinchromosome CDS5332264 903 + 0.669989
NA PP5052 RNA methyltransferase, TrmH family, group 2chromosome CDS5758909 474 + 0.637131
NA PP0666 conserved hypothetical proteinchromosome CDS774827 363 + 0.630854
NA PP2689 endoribonuclease, putativechromosome CDS3079696 372 - 0.626344
NA PP2932 amidase family proteinchromosome CDS3333855 1704 - 0.670188
NA PP4585 RNA methyltransferase, TrmH familychromosome CDS5204637 471 + 0.59448
NA PP3706 conserved hypothetical proteinchromosome CDS4226880 960 - 0.51875
NA PP3464 hypothetical proteinchromosome CDS3928461 1314 + 0.648402
NA PP3418 hypothetical proteinchromosome CDS3869081 393 + 0.641221
NA PP1655 RNA methyltransferase, TrmA familychromosome CDS1849456 1359 + 0.666667
NA PP3784 conserved domain proteinchromosome CDS4311279 1152 + 0.584201
NA PP1106 conserved hypothetical proteinchromosome CDS1264401 1017 - 0.662734
NA PP2272 hypothetical proteinchromosome CDS2594349 606 + 0.59571
NA PP2188 tRNA-(ms(2)io(6)a)-hydroxylase, putativechromosome CDS2494789 618 + 0.634304
NA PP5303 endoribonucleasechromosome CDS6051262 381 + 0.606299
NA PP3496 conserved hypothetical proteinchromosome CDS3965193 399 + 0.631579
NA PP4763 acetyltransferase, GNAT familychromosome CDS5422867 537 - 0.651769
NA PP0613 amidase family proteinchromosome CDS718505 1410 - 0.651773
NA PP0761 conserved hypothetical proteinchromosome CDS876158 999 - 0.644645
NA PP4766 ATP-dependent RNA helicase, DEAD box familychromosome CDS5426769 1332 - 0.647147
NA PP1311 tryptophanyl-tRNA synthetase, putativechromosome CDS1498072 1350 + 0.642963
NA PP1160 asparaginase family proteinchromosome CDS1334824 990 + 0.621212
NA PP2424 2'-5' RNA ligase, putativechromosome CDS2771298 546 + 0.672161
NA PP5345 acetyltransferase, GNAT familychromosome CDS6092661 672 + 0.636905
NA PP2169 TIM-barrel protein, yjbN familychromosome CDS2475355 1011 - 0.626113
NA PP4532 ATP-dependent RNA helicase, DEAD box familychromosome CDS5145429 1323 - 0.619048
NA PP2182 conserved hypothetical proteinchromosome CDS2487626 516 + 0.649225
NA PP0820 acetyltransferase, GNAT familychromosome CDS958544 564 + 0.657801
NA PP1111 synthetase, putativechromosome CDS1270312 789 + 0.557668
NA PP1197 conserved hypothetical protein TIGR01125chromosome CDS1371797 1413 - 0.621373
NA PP0719 GTP-binding protein, putativechromosome CDS836253 1101 - 0.598547
NA PP4245 siderophore biosynthesis protein, putativechromosome CDS4832176 618 - 0.621359
NA PP3522 conserved hypothetical proteinchromosome CDS3995382 423 - 0.647754
NA PP3690 hypothetical proteinchromosome CDS4199711 1323 - 0.513983
NA PP3574 YER057c/YjgF/UK114 family proteinchromosome CDS4054767 393 + 0.613232
NA PP1827 modification methylase, HemK familychromosome CDS2051857 909 + 0.647965
NA PP1868 ATP-dependent RNA helicase, DEAD box familychromosome CDS2090672 1680 + 0.643452
NA PP4435 conserved hypothetical proteinchromosome CDS5032480 354 + 0.545198
NA PP0839 RNA methyltransferase, TrmH family, group 1chromosome CDS976288 756 + 0.62963
NA PP2330 conserved hypothetical proteinchromosome CDS2657817 981 - 0.621814
NA PP4820 TIM-barrel protein, putative, NifR3 familychromosome CDS5482072 1014 + 0.620316
NA PP4648 nucleotide methyltransferase, putativechromosome CDS5272852 1125 + 0.656889
NA PP3975 conserved hypothetical proteinchromosome CDS4483000 462 - 0.58658
NA PP3777 conserved hypothetical proteinchromosome CDS4305213 840 - 0.582143
NA PP3252 modification methylase, HemK familychromosome CDS3686924 951 + 0.636172
NA PP2946 peptidyl-tRNA hydrolase domain proteinchromosome CDS3351062 414 + 0.60628
NA PP1775 metallo-beta-lactamase family proteinchromosome CDS1982046 1434 + 0.61576
NA PP1766 initiation factor 2 subunit familychromosome CDS1969627 1077 + 0.663881
NA PP3291 metallo-beta-lactamase family proteinchromosome CDS3725345 1368 + 0.629386
NA PP2247 endoribonuclease, putativechromosome CDS2563409 378 + 0.653439
NA PP4720 conserved hypothetical protein TIGR00253chromosome CDS5367402 384 + 0.5625
NA PP4980 ATP-dependent RNA helicase, DEAD box familychromosome CDS5672752 1881 + 0.654439
NA PP1245 hypothetical proteinchromosome CDS1420519 891 + 0.630752
PP0070 Sua5/YciO/YrdC/YwlC family proteinchromosome CDS80386 558 + 0.65233
PP0394 tRNA nucleotidyltransferase, putativechromosome CDS478361 1107 - 0.634146
PP0406 nucleotidyltransferase family proteinchromosome CDS493565 672 + 0.650298
alaS PP4474 alanyl-tRNA synthetasechromosome CDS5081639 2625 - 0.629714
algF PP1278 alginate O-acetyltransferasechromosome CDS1459628 648 - 0.632716
ansA PP2453 L-asparaginase IIchromosome CDS2799199 1089 - 0.61708
ansB L-asparaginase, type Ichromosome CDS584264 990 - 0.639394
argS PP5089 arginyl-tRNA synthetasechromosome CDS5813071 1737 + 0.633276
aspS PP1213 aspartyl-tRNA synthetasechromosome CDS1390192 1776 + 0.616554
cafA PP0937 cytoplasmic axial filament proteinchromosome CDS1078804 1458 + 0.604938
cumB PP1035 cumB proteinchromosome CDS1182394 438 + 0.675799
cysS PP2905 cysteinyl-tRNA synthetasechromosome CDS3303362 1383 + 0.632683
dbpA PP4952 ATP-dependent RNA helicase DbpAchromosome CDS5641825 1386 + 0.660173
def-1 polypeptide deformylasechromosome CDS78533 507 - 0.607495
def-2 PP4559 polypeptide deformylasechromosome CDS5180448 537 - 0.633147
dtD PP5027 D-tyrosyl-tRNA(Tyr) deacylasechromosome CDS5728952 438 - 0.60274
efp PP1858 translation elongation factor Pchromosome CDS2080510 570 + 0.554386
fmt methionyl-tRNA formyltransferasechromosome CDS77540 933 - 0.658092
frr PP1594 ribosome recycling factorchromosome CDS1787951 558 + 0.612903
fusA-1 translation elongation factor Gchromosome CDS547149 2148 + 0.56378
fusA-2 PP4111 translation elongation factor Gchromosome CDS4645431 2112 + 0.612689
gatA PP0931 glutamyl-tRNA(Gln) amidotransferase, A subunitchromosome CDS1073402 1452 - 0.65427
gatB PP0930 glutamyl-tRNA(Gln) amidotransferase, B subunitchromosome CDS1071945 1446 - 0.61065
gatC PP0932 glutamyl-tRNA(Gln) amidotransferase, C subunitchromosome CDS1074869 309 - 0.614887
glnS PP2904 glutaminyl-tRNA synthetasechromosome CDS3301649 1704 + 0.637324
gltX PP1977 glutamyl-tRNA synthetasechromosome CDS2239769 1482 + 0.619433
glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunitchromosome CDS71901 948 - 0.605485
glyS glycyl-tRNA synthetase, tetrameric type, beta subunitchromosome CDS69850 2055 - 0.644769
gshB PP4993 glutathione synthetasechromosome CDS5690572 954 + 0.633124
hemK PP0734 methyl transferasechromosome CDS853576 831 + 0.66426
hisS PP0854 histidyl-tRNA synthetasechromosome CDS988147 1290 + 0.631008
hslR heat shock protein 15chromosome CDS304740 402 + 0.639304
ileS PP0603 isoleucyl-tRNA synthetasechromosome CDS710201 2832 + 0.635946
infA PP4007 translation initiation factor IF-1chromosome CDS4516944 219 + 0.570776
infB PP4712 translation initiation factor IF-2chromosome CDS5356218 2541 - 0.612751
infC PP2466 translation initiation factor IF-3chromosome CDS2811531 534 + 0.537453
ksgA dimethyladenosine transferasechromosome CDS486511 804 - 0.640547
leuS PP4794 leucyl-tRNA synthetasechromosome CDS5456267 2607 + 0.629076
lysS PP1496 lysyl-tRNA synthetasechromosome CDS1701645 1503 + 0.616766
map PP1590 methionine aminopeptidase, type Ichromosome CDS1784114 783 - 0.609195
miaA PP4895 tRNA delta(2)-isopentenylpyrophosphate transferasechromosome CDS5564610 972 - 0.619342
omlA PP4731 outer membrane lipoprotein OmlAchromosome CDS5380697 537 + 0.575419
pcnB PP4697 poly(A) polymerasechromosome CDS5338771 1383 + 0.647867
pheS PP2469 phenylalanyl-tRNA synthetase, alpha subunitchromosome CDS2812813 1017 + 0.610619
pnp PP4708 polyribonucleotide nucleotidyltransferasechromosome CDS5352009 2106 - 0.600665
prfA PP0733 peptide chain release factor 1chromosome CDS852494 1083 + 0.619575
prfC PP0872 peptide chain release factor 3chromosome CDS1011587 1584 + 0.614899
prmA PP4818 ribosomal protein L11 methyltransferasechromosome CDS5479474 993 + 0.65861
proS PP1205 prolyl-tRNA synthetasechromosome CDS1383313 1716 - 0.62704
pth PP0720 peptidyl-tRNA hydrolasechromosome CDS837378 585 - 0.632479
queA PP0832 S-adenosylmethionine:tRNAribosyltransferase-isom erasechromosome CDS969086 1050 + 0.659048
rbfA PP4711 ribosome-binding factor Achromosome CDS5355703 399 - 0.609023
rhlB PP1295 ATP-dependent RNA helicase RhlBchromosome CDS1480293 1197 - 0.627402
rimK ribosomal protein S6 modification proteinchromosome CDS303246 906 - 0.619205
rimM PP1463 16S rRNA processing protein RimMchromosome CDS1668888 537 + 0.564246
rnd PP4591 ribonuclease Dchromosome CDS5208999 1134 - 0.643739
rne PP1905 ribonuclease Echromosome CDS2147241 3276 - 0.657814
rnpA ribonuclease P protein componentchromosome CDS8394 405 - 0.572839
rph PP5294 ribonuclease PHchromosome CDS6041192 723 - 0.61964
rplA ribosomal protein L1chromosome CDS535564 696 + 0.570402
rplB ribosomal protein L2chromosome CDS552612 825 + 0.581818
rplC ribosomal protein L3chromosome CDS551018 669 + 0.569507
rplD ribosomal protein L4chromosome CDS551699 603 + 0.570481
rplE ribosomal protein L5chromosome CDS556397 540 + 0.561111
rplF ribosomal protein L6chromosome CDS557869 534 + 0.565543
rplI PP4874 ribosomal protein L9chromosome CDS5542809 447 - 0.60179
rplJ ribosomal protein L10chromosome CDS536457 501 + 0.56487
rplK ribosomal protein L11chromosome CDS535133 432 + 0.583333
rplL ribosomal protein L7/L12chromosome CDS537035 366 + 0.521858
rplM PP1315 ribosomal protein L13chromosome CDS1503194 429 + 0.540793
rplN ribosomal protein L14chromosome CDS555682 369 + 0.552846
rplO ribosomal protein L15chromosome CDS559450 435 + 0.588506
rplP ribosomal protein L16chromosome CDS554785 414 + 0.570048
rplQ ribosomal protein L17chromosome CDS563960 387 + 0.596899
rplR ribosomal protein L18chromosome CDS558413 351 + 0.586895
rplS PP1465 ribosomal protein L19chromosome CDS1670223 351 + 0.578348
rplT PP2468 ribosomal protein L20chromosome CDS2812347 357 + 0.543417
rplU PP0688 ribosomal protein L21chromosome CDS800517 513 + 0.563353
rplV ribosomal protein L22chromosome CDS553740 333 + 0.576577
rplW ribosomal protein L23chromosome CDS552298 300 + 0.5
rplX ribosomal protein L24chromosome CDS556062 315 + 0.520635
rpmA PP0689 ribosomal protein L27chromosome CDS801068 258 + 0.55814
rpmB PP5282 ribosomal protein L28chromosome CDS6030540 237 - 0.540084
rpmC ribosomal protein L29chromosome CDS555195 195 + 0.533333
rpmD ribosomal protein L30chromosome CDS559270 177 + 0.536723
rpmE PP5087 ribosomal protein L31chromosome CDS5810281 303 - 0.537954
rpmF PP1911 ribosomal protein L32chromosome CDS2155370 183 + 0.568306
rpmG PP5281 ribosomal protein L33chromosome CDS6030373 156 - 0.50641
rpmH ribosomal protein L34chromosome CDS8812 135 - 0.585185
rpmI PP2467 ribosomal protein L35chromosome CDS2812110 210 + 0.552381
rpmJ ribosomal protein L36chromosome CDS561245 117 + 0.555556
rpoX PP0951 sigma54 modulation proteinchromosome CDS1094177 309 - 0.546926
rpsA PP1772 ribosomal protein S1chromosome CDS1979328 1731 + 0.566724
rpsB PP1591 ribosomal protein S2chromosome CDS1785243 738 + 0.578591
rpsC ribosomal protein S3chromosome CDS554059 714 + 0.539216
rpsD ribosomal protein S4chromosome CDS562273 621 + 0.557166
rpsE ribosomal protein S5chromosome CDS558767 501 + 0.568862
rpsF PP4877 ribosomal protein S6chromosome CDS5544432 426 - 0.577465
rpsG ribosomal protein S7chromosome CDS546648 471 + 0.577495
rpsH ribosomal protein S8chromosome CDS557464 393 + 0.575064
rpsI PP1316 ribosomal protein S9chromosome CDS1503637 393 + 0.577608
rpsJ ribosomal protein S10chromosome CDS550659 312 + 0.535256
rpsK ribosomal protein S11chromosome CDS561868 390 + 0.576923
rpsL ribosomal protein S12chromosome CDS546170 372 + 0.572581
rpsM ribosomal protein S13chromosome CDS561493 357 + 0.554622
rpsN ribosomal protein S14chromosome CDS556950 306 + 0.594771
rpsO PP4709 ribosomal protein S15chromosome CDS5354365 324 - 0.57716
rpsP PP1462 ribosomal protein S16chromosome CDS1668553 330 + 0.572727
rpsQ ribosomal protein S17chromosome CDS555392 267 + 0.546816
rpsR PP4876 ribosomal protein S18chromosome CDS5544173 231 - 0.554113
rpsS ribosomal protein S19chromosome CDS553453 276 + 0.547101
rpsT PP0600 ribosomal protein S20chromosome CDS707068 279 - 0.541219
rpsU ribosomal protein S21chromosome CDS475288 216 - 0.555556
rrmJ PP4719 ribosomal RNA large subunit methyltransferase Jchromosome CDS5366751 624 - 0.589744
selB selenocysteine-specific translation elongation factorchromosome CDS582133 1923 + 0.658866
serS PP4000 seryl-tRNA synthetasechromosome CDS4508780 1281 - 0.633099
sun sun proteinchromosome CDS76233 1311 - 0.677346
tgt PP0833 queuine tRNA-ribosyltransferasechromosome CDS970150 1116 + 0.603943
thrS PP2465 threonyl-tRNA synthetasechromosome CDS2809591 1923 + 0.594384
trmA PP4654 tRNA (uracil-5-)-methyltransferasechromosome CDS5279780 1086 + 0.629834
trmD PP1464 tRNA (guanine-N1)-methyltransferasechromosome CDS1669428 753 + 0.580345
trmU PP4014 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS4525068 1125 + 0.649778
tsf PP1592 translation elongation factor Tschromosome CDS1786166 864 + 0.583333
tuf-1 translation elongation factor Tuchromosome CDS532734 1194 + 0.565327
tuf-2 translation elongation factor Tuchromosome CDS549324 1194 + 0.572864
tyrS tyrosyl-tRNA synthetasechromosome CDS522932 1200 + 0.593333
valS PP0977 valyl-tRNA synthetasechromosome CDS1114983 2847 - 0.620302