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2024-05-08 04:43:53

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Thiomicrospira denitrificans ATCC 33889, ATCC 33889

Number of genes found: 151

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Thiomicrospira denitrificans ATCC 33889, ATCC 33889
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Tmden_1773 Ribosomal protein S32chromosome CDS1857378 150 - 0.366667
NA Tmden_0294 Ribosomal protein L29chromosome CDS307765 186 + 0.327957
NA Tmden_0175 Nucleotidyl transferasechromosome CDS178232 705 - 0.323404
NA Tmden_0351 Ribosomal protein L10chromosome CDS346955 480 + 0.352083
NA Tmden_0455 Ribosomal protein L19chromosome CDS452021 360 + 0.366667
NA Tmden_0611 Pseudouridine synthasechromosome CDS619142 726 + 0.37741
NA Tmden_1660 Ribosomal protein S6chromosome CDS1744060 414 + 0.357488
NA Tmden_1671 Ribosomal protein L11 methyltransferasechromosome CDS1755382 834 - 0.32494
NA Tmden_0710 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS723637 1026 + 0.34308
NA Tmden_0869 Phenylalanyl-tRNA synthetase, alpha subunitchromosome CDS895612 993 + 0.374622
NA Tmden_0466 Aminoacyl-tRNA hydrolasechromosome CDS468894 555 + 0.347748
NA Tmden_2044 Ribosomal protein S20pchromosome CDS2130768 261 + 0.37931
NA Tmden_0407 sigma 54 modulation protein/ribosomal protein S30EAchromosome CDS405128 543 - 0.327808
NA Tmden_0288 50S ribosomal protein L23chromosome CDS304901 282 + 0.351064
NA Tmden_0908 Elongation factor Pchromosome CDS940681 567 + 0.366843
NA Tmden_0726 Ribosomal protein S15chromosome CDS749250 276 + 0.315217
NA Tmden_0328 Ribosomal protein L17chromosome CDS329494 351 + 0.37037
NA Tmden_1086 Aspartyl-tRNA synthetasechromosome CDS1146459 1743 + 0.384968
NA Tmden_0207 Ribosomal protein L20chromosome CDS210448 357 + 0.392157
NA Tmden_0521 Ribosomal protein L34chromosome CDS522437 135 + 0.392593
NA Tmden_1343 Hemolysin Achromosome CDS1415164 711 - 0.38256
NA Tmden_1955 conserved hypothetical proteinchromosome CDS2041199 261 + 0.260536
NA Tmden_0286 Ribosomal protein L3chromosome CDS303711 576 + 0.380208
NA Tmden_1333 Glutamyl-tRNA(Gln) amidotransferase B subunitchromosome CDS1405880 1425 - 0.369825
NA Tmden_0907 Queuine tRNA-ribosyltransferasechromosome CDS939234 1119 - 0.387846
NA Tmden_1966 Addiction module toxin, RelE/StbEchromosome CDS2047268 258 + 0.286822
NA Tmden_1662 Ribosomal protein S18chromosome CDS1745070 264 + 0.359848
NA Tmden_0860 Prolyl-tRNA synthetasechromosome CDS887425 1308 + 0.36315
NA Tmden_0005 Polynucleotide adenylyltransferase regionchromosome CDS5407 1236 - 0.282362
NA Tmden_0092 Ribosomal protein L13chromosome CDS99332 423 + 0.338061
NA Tmden_0522 ribonuclease P proteinchromosome CDS522688 240 + 0.316667
NA Tmden_0285 Ribosomal protein S10chromosome CDS303390 312 + 0.38141
NA Tmden_1812 tRNA isopentenyltransferasechromosome CDS1890772 954 + 0.323899
NA Tmden_0304 Ribosomal protein L15chromosome CDS311409 399 + 0.383459
NA Tmden_0022 Ribosomal protein S21chromosome CDS27313 213 - 0.380282
NA Tmden_0812 Plasmid stabilization systemchromosome CDS845155 255 - 0.309804
NA Tmden_1635 Cytosine deaminasechromosome CDS1716570 438 - 0.390411
NA Tmden_0451 Ribosomal protein S16chromosome CDS450211 231 + 0.402597
NA Tmden_1146 Superfamily II DNA and RNA helicases-likechromosome CDS1202556 648 + 0.334877
NA Tmden_0295 Ribosomal protein S17chromosome CDS307960 249 + 0.35743
NA Tmden_0773 Glutamyl-tRNA(Gln) amidotransferase A subunitchromosome CDS798759 1344 - 0.397321
NA Tmden_1794 Arginine--tRNA ligasechromosome CDS1876085 1584 - 0.368687
NA Tmden_1022 MiaB-like tRNA modifying enzymechromosome CDS1076547 1248 + 0.367788
NA Tmden_0780 Isoleucyl-tRNA synthetase, class Iachromosome CDS806382 2760 - 0.375362
NA Tmden_0677 Ribosome-binding factor Achromosome CDS691556 351 + 0.344729
NA Tmden_2045 Peptide chain release factor 1chromosome CDS2131043 1068 + 0.386704
NA Tmden_2073 Nucleotidyl transferasechromosome CDS2162677 663 + 0.375566
NA Tmden_0389 Tryptophanyl-tRNA synthetase, class Ibchromosome CDS389848 960 - 0.35
NA Tmden_0300 Ribosomal protein S8chromosome CDS309645 396 + 0.340909
NA Tmden_2010 Pseudouridine synthase, Rsuchromosome CDS2091722 687 - 0.378457
NA Tmden_0783 Pseudouridine synthase, RluDchromosome CDS812350 972 + 0.34465
NA Tmden_1425 Formyl transferase-likechromosome CDS1488941 1641 - 0.380865
NA Tmden_0025 DEAD/DEAH box helicase-likechromosome CDS30766 1197 + 0.365915
NA Tmden_0343 tRNA/rRNA methyltransferase (SpoU)chromosome CDS340842 750 - 0.314667
NA Tmden_0145 Glutamyl-tRNA synthetasechromosome CDS149819 1389 - 0.395248
NA Tmden_0307 Translation initiation factor IF-1chromosome CDS313851 219 + 0.3379
NA Tmden_0024 hypothetical proteinchromosome CDS29605 1023 - 0.357771
NA Tmden_0356 Ribosomal protein S7chromosome CDS357420 468 + 0.363248
NA Tmden_0212 Pseudouridine synthase, Rsuchromosome CDS216083 939 - 0.343983
NA Tmden_0438 tRNA pseudouridine synthase Bchromosome CDS440820 822 + 0.347932
NA Tmden_0447 Pseudouridine synthasechromosome CDS447226 735 + 0.361905
NA Tmden_1572 leucyl-tRNA synthetase class Iachromosome CDS1646787 2469 - 0.356825
NA Tmden_1468 conserved hypothetical proteinchromosome CDS1541322 432 + 0.31713
NA Tmden_1130 Histidyl-tRNA synthetase, class IIachromosome CDS1181585 1212 + 0.367987
NA Tmden_1908 RNA methyltransferase TrmH, group 3chromosome CDS1991176 681 - 0.36417
NA Tmden_0299 Ribosomal protein S14chromosome CDS309354 186 + 0.387097
NA Tmden_1375 Ribosomal protein L9chromosome CDS1445454 447 + 0.328859
NA Tmden_1687 S6 modification enzyme RimKchromosome CDS1766501 933 + 0.370847
NA Tmden_0832 Translation elongation factor, selenocysteine-specificchromosome CDS863717 1836 + 0.321895
NA Tmden_0575 conserved hypothetical proteinchromosome CDS583323 486 + 0.304527
NA Tmden_0306 Peptidase M24A, methionine aminopeptidase, subfamily 1chromosome CDS313076 759 + 0.376812
NA Tmden_0324 Ribosomal protein S13chromosome CDS327049 363 + 0.399449
NA Tmden_2034 Peptide deformylasechromosome CDS2120659 537 - 0.337058
NA Tmden_1737 conserved hypothetical proteinchromosome CDS1822673 1320 + 0.37803
NA Tmden_1169 Dihydrouridine synthase TIM-barrel protein nifR3chromosome CDS1224714 957 - 0.364681
NA Tmden_0390 putative sigma 54 modulation protein/ribosomal protein S30EAchromosome CDS390950 330 + 0.333333
NA Tmden_1443 YjgF-like proteinchromosome CDS1511900 375 - 0.386667
NA Tmden_0355 Ribosomal protein S12chromosome CDS356938 381 + 0.375328
NA Tmden_0066 Threonyl-tRNA synthetase, class IIachromosome CDS71086 1809 + 0.377557
NA Tmden_0287 Ribosomal protein L4/L1echromosome CDS304286 615 + 0.377236
NA Tmden_0293 Ribosomal protein L16chromosome CDS307353 426 + 0.384977
NA Tmden_1767 DEAD/DEAH box helicase-likechromosome CDS1849066 1623 + 0.390635
NA Tmden_1267 RNA-metabolising metallo-beta-lactamasechromosome CDS1335270 1398 - 0.334764
NA Tmden_1831 Guanine deaminasechromosome CDS1914456 450 - 0.362222
NA Tmden_2067 Ribosome recycling factorchromosome CDS2156880 558 + 0.324373
NA Tmden_0290 Ribosomal protein S19chromosome CDS306028 276 + 0.365942
NA Tmden_0610 DEAD/DEAH box helicase-likechromosome CDS617837 1299 + 0.3495
NA Tmden_1602 Ribosomal protein L28chromosome CDS1682958 189 - 0.365079
NA Tmden_0026 Thiamine biosynthesis protein:ExsBchromosome CDS32011 981 + 0.383282
NA Tmden_1250 Glu-tRNAGln amidotransferase, C subunitchromosome CDS1318513 291 + 0.302406
NA Tmden_0454 tRNA (guanine-N(1)-)-methyltransferasechromosome CDS451203 696 + 0.33908
NA Tmden_0360 Peptide chain release factor 2chromosome CDS361416 1098 - 0.361566
NA Tmden_0350 Ribosomal protein L1chromosome CDS346110 693 + 0.353535
NA Tmden_0074 tRNA synthetase, class II (G, H, P and S)chromosome CDS81430 849 + 0.316843
NA Tmden_1945 DEAD/DEAH box helicase-likechromosome CDS2028819 1236 - 0.400485
NA Tmden_0302 Ribosomal protein L18chromosome CDS310600 357 + 0.369748
NA Tmden_1667 Serine--tRNA ligasechromosome CDS1749101 1248 + 0.370192
NA Tmden_1910 Ribosomal protein L31chromosome CDS1992723 201 - 0.333333
NA Tmden_0296 Ribosomal protein L14chromosome CDS308208 369 + 0.376694
NA Tmden_0206 Ribosomal protein L35chromosome CDS210149 192 + 0.328125
NA Tmden_0292 ribosomal protein S3chromosome CDS306625 726 + 0.378788
NA Tmden_0326 Ribosomal protein S4:RNA-binding S4chromosome CDS327826 627 + 0.385965
NA Tmden_0387 hypothetical proteinchromosome CDS388310 255 - 0.341176
NA Tmden_0289 Ribosomal protein L2chromosome CDS305184 840 + 0.394048
NA Tmden_1415 Ribosomal protein L27chromosome CDS1480187 258 - 0.375969
NA Tmden_1097 tRNA/rRNA methyltransferase (SpoU)chromosome CDS1156278 471 - 0.322718
NA Tmden_0352 Ribosomal protein L7/L12chromosome CDS347494 369 + 0.360434
NA Tmden_0618 Formylmethionine deformylasechromosome CDS628288 852 - 0.321596
NA Tmden_0453 16S rRNA processing protein RimMchromosome CDS450664 540 + 0.327778
NA Tmden_1657 Queuosine biosynthesis proteinchromosome CDS1740963 1029 + 0.360544
NA Tmden_0720 Tyrosyl-tRNA synthetase, class Ibchromosome CDS741717 1200 + 0.353333
NA Tmden_1971 Initiation factor 2B alpha/beta/deltachromosome CDS2054249 1080 - 0.40463
NA Tmden_1721 hypothetical proteinchromosome CDS1801644 360 + 0.3
NA Tmden_0067 Initiation factor 3chromosome CDS72891 519 + 0.368015
NA Tmden_0349 Ribosomal protein L11chromosome CDS345614 426 + 0.347418
NA Tmden_1857 Glycine--tRNA ligasechromosome CDS1941254 882 - 0.412698
NA Tmden_2090 16S rRNA dimethylasechromosome CDS2184594 804 - 0.356965
NA Tmden_1956 Plasmid stabilization systemchromosome CDS2041787 213 - 0.267606
NA Tmden_1319 Modification methylase HemKchromosome CDS1388451 831 - 0.356197
NA Tmden_1059 Glutamyl-tRNA synthetasechromosome CDS1123630 1299 + 0.330254
NA Tmden_0291 Ribosomal protein L22chromosome CDS306306 318 + 0.374214
NA Tmden_0428 Polyribonucleotide nucleotidyltransferasechromosome CDS429660 2166 + 0.364266
NA Tmden_0297 Ribosomal protein L24chromosome CDS308576 231 + 0.341991
NA Tmden_0346 Ribosomal protein L33chromosome CDS344373 153 + 0.287582
NA Tmden_1081 Rare lipoprotein Achromosome CDS1141039 813 - 0.339483
NA Tmden_0994 Pseudouridylate synthasechromosome CDS1046036 711 - 0.322082
NA Tmden_1212 Cysteine--tRNA ligasechromosome CDS1278994 1401 + 0.366881
NA Tmden_0345 Translation elongation factor Tuchromosome CDS343130 1200 + 0.406667
NA Tmden_1273 Lysyl-tRNA synthetase, class-2chromosome CDS1342393 1515 + 0.335974
NA Tmden_0325 Ribosomal protein S11chromosome CDS327422 393 + 0.394402
NA Tmden_2094 Pseudouridine synthase, RluDchromosome CDS2188471 915 - 0.345355
NA Tmden_0465 Ribosomal protein L25chromosome CDS468354 537 + 0.361266
NA Tmden_0676 Initiation factor 2chromosome CDS688935 2625 + 0.361143
NA Tmden_0093 Ribosomal protein S9chromosome CDS99765 390 + 0.423077
NA Tmden_1746 tRNA-i(6)A37 modification enzyme MiaBchromosome CDS1830126 1308 - 0.366208
NA Tmden_0303 Ribosomal protein S5chromosome CDS310965 441 + 0.365079
NA Tmden_1122 GTP-binding protein, HSR1-relatedchromosome CDS1175531 1101 + 0.374205
NA Tmden_1152 RNA-binding S4chromosome CDS1207341 249 - 0.293173
NA Tmden_0141 DEAD/DEAH box helicase-likechromosome CDS145563 1374 + 0.377001
NA Tmden_1898 Alanine--tRNA ligasechromosome CDS1978988 2556 - 0.390845
NA Tmden_1412 Methionyl-tRNA formyltransferasechromosome CDS1477244 909 - 0.350935
NA Tmden_0298 Ribosomal protein L5chromosome CDS308809 546 + 0.373626
NA Tmden_1801 elongation factor Tschromosome CDS1882381 1053 - 0.37132
NA Tmden_0991 Glycine--tRNA ligasechromosome CDS1042691 2022 + 0.358556
NA Tmden_0737 Valyl-tRNA synthetase, class Iachromosome CDS759123 2628 - 0.389269
NA Tmden_1802 Ribosomal protein S2chromosome CDS1883436 780 - 0.369231
NA Tmden_0357 Translation elongation factor Gchromosome CDS357900 2091 + 0.391679
NA Tmden_0873 RNA binding S1chromosome CDS901203 1656 + 0.34058
NA Tmden_0301 Ribosomal protein L6chromosome CDS310050 537 + 0.372439
NA Tmden_1018 tRNA (uracil-5-)-methyltransferasechromosome CDS1071210 1110 + 0.33964
NA Tmden_1416 Ribosomal protein L21chromosome CDS1480476 309 - 0.36246