TitleGenColors Logo
spacer
Home spacerGenomes
spacerMethods
spacerDocumentation spacerContactspacer spacerLeibniz FLI
spacer
QuickSearch
2024-05-06 12:46:28

Gene list

Applied filters:

COG category: Translation, ribosomal structure and biogenesis
Organism: Rhizobium etli CFN 42, CFN 42

Number of genes found: 183

Free access
Sort by:

 

Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Rhizobium etli CFN 42, CFN 42
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA RHE_CH04064 putative acetyltransferase proteinchromosome CDS4307913 657 + 0.611872
NA RHE_CH02947 putative aminoglycoside 3`-phosphotransferase proteinchromosome CDS3074801 786 - 0.652672
NA RHE_PF00541 hypothetical conserved proteinp42f CDS606687 471 + 0.656051
NA RHE_CH04109 probable RNA methyltransferase-sun proteinchromosome CDS4359862 1395 - 0.655914
NA RHE_CH03043 probable tRNA/rRNA methyltransferase proteinchromosome CDS3184368 462 + 0.660173
NA RHE_CH01283 hypothetical conserved proteinchromosome CDS1330204 306 + 0.604575
NA RHE_CH04023 putative heat shock protein (ribosome-associated)chromosome CDS4260104 405 + 0.637037
NA RHE_CH02315 probable tRNA/rRNA methyltransferase proteinchromosome CDS2412438 831 - 0.612515
NA RHE_CH01276 hypothetical conserved proteinchromosome CDS1325047 369 + 0.626016
NA RHE_CH00038 probable peptide chain release factor protein (peptidyl-tRNA hydrolase protein)chromosome CDS41647 438 + 0.630137
NA RHE_CH03406 probable pseudouridylate synthase, ribosomal large subunit proteinchromosome CDS3579236 939 + 0.625133
NA RHE_CH02343 hypothetical proteinchromosome CDS2448309 450 - 0.622222
NA RHE_CH01522 putative acetyltransferase proteinchromosome CDS1602486 516 - 0.622093
NA RHE_CH02879 putative translation initiation inhibitor proteinchromosome CDS3010153 345 - 0.626087
NA RHE_CH00376 putative 2-methylthioadenine synthetase (miaB-like) proteinchromosome CDS387736 1410 - 0.62695
NA RHE_CH04065 putative acetyltransferase proteinchromosome CDS4308566 588 + 0.659864
NA RHE_CH00294 putative acetyltransferase proteinchromosome CDS301467 471 - 0.619958
NA RHE_CH02569 putative tRNA-dihydrouridine synthase (nifR3-like) proteinchromosome CDS2678948 966 + 0.65942
NA RHE_CH01957 probable deoxycytidylate deaminase family proteinchromosome CDS2041582 588 - 0.60034
NA RHE_CH00910 probable RNA-methyltransferase proteinchromosome CDS957746 1251 - 0.664269
NA RHE_CH01655 probable tRNA/rRNA methyltransferase proteinchromosome CDS1745952 891 - 0.635241
NA RHE_CH00959 hypothetical conserved proteinchromosome CDS1007784 381 + 0.603675
NA RHE_CH01528 hypothetical conserved proteinchromosome CDS1607987 501 - 0.616766
NA RHE_CH00117 hypothetical conserved proteinchromosome CDS127889 690 - 0.627536
NA RHE_CH00110 probable rRNA (guanine-N2-)-methyltransferase, small subunit proteinchromosome CDS118600 1017 - 0.66175
NA RHE_CH02874 probable enterobacter ribonuclease proteinchromosome CDS3004354 741 - 0.631579
NA RHE_CH01911 putative translation initiation inhibitor proteinchromosome CDS1993054 471 - 0.615711
NA RHE_CH03534 50S ribosomal protein L36chromosome CDS3722018 126 + 0.563492
NA RHE_CH03633 probable acetyltransferase proteinchromosome CDS3844219 696 - 0.58046
NA RHE_CH04045 putative serine--tRNA ligase proteinchromosome CDS4283198 909 + 0.613861
NA RHE_CH01732 hypothetical conserved proteinchromosome CDS1816659 498 - 0.63253
NA RHE_CH00899 probable translation factor sua5 proteinchromosome CDS946469 1011 - 0.676558
NA RHE_CH00028 probable nucleotidyltransferase proteinchromosome CDS29115 732 - 0.606557
NA RHE_CH02693 putative translation initiation inhibitor proteinchromosome CDS2804132 489 + 0.654397
NA RHE_CH02467 probable acetyltransferase proteinchromosome CDS2579764 309 - 0.627832
NA RHE_CH03031 putative GTP-binding proteinchromosome CDS3171563 1296 + 0.612654
NA RHE_CH00406 probable sigma 54 modulation proteinchromosome CDS420275 639 + 0.547731
NA RHE_CH00458 hypothetical conserved proteinchromosome CDS470266 483 + 0.600414
NA RHE_CH00602 probable translation initiation inhibitor proteinchromosome CDS619566 393 + 0.572519
NA RHE_CH03954 hypothetical conserved proteinchromosome CDS4181356 1272 - 0.636006
NA RHE_PF00558 putative S-adenosylmethionine tRNA ribosyltransferase proteinp42f CDS624036 1047 - 0.643744
NA RHE_CH02040 putative translation initiation inhibitor proteinchromosome CDS2132754 390 - 0.576923
NA RHE_CH01163 putative exonuclease protein involved in mRNA processingchromosome CDS1217194 1011 + 0.645895
NA RHE_CH03339 probable RNA methylase proteinchromosome CDS3502052 822 - 0.643552
NA RHE_CH02256 putative acetyltransferase proteinchromosome CDS2356390 576 - 0.630208
aacC2 RHE_CH02150 aminoglycoside N6`-acetyltransferase proteinchromosome CDS2255187 510 - 0.498039
alaS2 RHE_CH02322 alanyl-tRNA synthetase proteinchromosome CDS2419864 2700 - 0.63037
argS RHE_CH01818 arginyl-tRNA synthetase (Arginine--tRNA ligase) proteinchromosome CDS1903654 1758 + 0.581342
aspS RHE_CH01497 aspartyl-tRNA synthetase proteinchromosome CDS1572365 1809 + 0.619679
codAch1 RHE_CH00834 cytosine deaminase proteinchromosome CDS874995 432 - 0.655093
cysS RHE_CH01425 cysteinyl-tRNA synthetase proteinchromosome CDS1495674 1377 - 0.621641
deaD RHE_CH02179 ATP-dependent RNA helicase proteinchromosome CDS2282640 1956 - 0.654397
def1 RHE_CH00412 peptide deformylase proteinchromosome CDS428111 516 + 0.610465
def2 RHE_CH02219 peptide deformylase proteinchromosome CDS2323668 495 + 0.636364
efp RHE_CH04040 elongation factor proteinchromosome CDS4278670 570 - 0.617544
fmt RHE_CH00414 methionyl-tRNA formyltransferase proteinchromosome CDS429389 936 + 0.659188
ftsJ RHE_CH00789 cell division proteinchromosome CDS827033 720 + 0.629167
fusA1 RHE_CH01066 elongation factor G proteinchromosome CDS1117298 1962 + 0.615698
fusA2 RHE_CH01672 elongation factor G proteinchromosome CDS1764565 2100 + 0.594286
gatA1 RHE_CH00218 glutamyl-tRNA amidotransferase subunit A proteinchromosome CDS229643 1392 - 0.649425
gatA2 RHE_CH01855 glutamyl-tRNA amidotransferase subunit A proteinchromosome CDS1941473 1482 + 0.637652
gatB RHE_CH01862 glutamyl-tRNA amidotransferase subunit B proteinchromosome CDS1947116 1503 + 0.608117
gatC RHE_CH01854 glutamyl-tRNA amidotransferase subunit C proteinchromosome CDS1941126 288 + 0.583333
genX RHE_CH04041 lysyl-tRNA synthetase proteinchromosome CDS4279388 1062 + 0.645951
gidA1 RHE_CH01836 glucose inhibited division protein Achromosome CDS1923654 1434 - 0.636681
gltX1 RHE_CH03656 glutamyl-tRNA synthetase proteinchromosome CDS3871372 1467 + 0.608044
gltX2 RHE_CH03786 glutamyl-tRNA synthetase proteinchromosome CDS4012535 882 + 0.639456
glyQ RHE_CH00881 glycyl-tRNA synthetase, alpha subunit proteinchromosome CDS921168 957 + 0.628004
glyS RHE_CH00890 glycyl-tRNA synthetase, beta subunit proteinchromosome CDS931735 2115 - 0.648227
gshB RHE_CH00322 glutathione synthetase proteinchromosome CDS327589 948 + 0.624473
hemK RHE_CH03755 protoporphyrinogen oxidase (methyltransferase) proteinchromosome CDS3981452 861 - 0.563298
hisS RHE_CH00821 histidyl-tRNA synthetase proteinchromosome CDS860188 1659 + 0.636528
ileS RHE_CH00832 isoleucyl-tRNA synthetase proteinchromosome CDS871218 2907 + 0.625731
infA RHE_CH00584 translation initiation factor IF-1 proteinchromosome CDS606464 219 + 0.547945
infB RHE_CH00116 translation initiation factor IF-2 proteinchromosome CDS125036 2751 - 0.650309
infC RHE_CH00260 translation initiation factor IF-3 proteinchromosome CDS271883 507 + 0.558185
kptA RHE_CH02280 RNA 2`-phosphotransferase proteinchromosome CDS2382000 516 + 0.571705
ksgA RHE_CH01449 dimethyladenosine transferase (16S rRNA dimethylase) proteinchromosome CDS1519250 828 - 0.637681
leuS RHE_CH04116 leucyl-tRNA synthetase proteinchromosome CDS4368710 2631 + 0.617256
ligT RHE_CH03936 2`-5` RNA ligase proteinchromosome CDS4164322 594 - 0.616162
lysS RHE_CH03657 lysyl-tRNA synthetase proteinchromosome CDS3872861 1497 + 0.609218
map1 RHE_CH01849 methionine aminopeptidase proteinchromosome CDS1937441 837 - 0.624851
map2 RHE_CH03116 methionine aminopeptidase proteinchromosome CDS3264320 672 - 0.644345
metS RHE_CH02157 methionyl-tRNA synthetase proteinchromosome CDS2262146 1551 - 0.615732
mgpS RHE_CH04022 ATP-dependent DNA helicase proteinchromosome CDS4256943 3159 + 0.641026
miaA RHE_CH02793 tRNA delta(2)-isopentenylpyrophosphate transferase proteinchromosome CDS2906992 894 - 0.649888
motB RHE_CH00674 chemotaxis motility proteinchromosome CDS692939 1311 + 0.620137
nifR RHE_CH01946 probable tRNA-dihydrouridine synthase proteinchromosome CDS2027864 954 + 0.668763
papS RHE_CH03049 poly(A) polymerase proteinchromosome CDS3189105 1134 - 0.655203
pheS RHE_CH00263 phenylalanyl-tRNA synthetase, alpha chain proteinchromosome CDS273498 1083 + 0.618652
pnp RHE_CH00111 polyribonucleotide nucleotidyltransferase proteinchromosome CDS119692 2139 - 0.618046
prfA RHE_CH03756 peptide chain release factor 1 proteinchromosome CDS3982309 1056 - 0.614583
prfB RHE_CH01648 peptide chain release factor 2 proteinchromosome CDS1740569 969 + 0.623323
prfC RHE_CH00331 peptide chain release factor 3 proteinchromosome CDS335907 1584 + 0.631313
prmA RHE_CH02828 ribosomal protein L11 methyltransferase proteinchromosome CDS2950462 879 - 0.632537
proS RHE_CH01623 prolyl-tRNA synthetase proteinchromosome CDS1703719 1233 + 0.600162
pth RHE_CH03028 peptidyl-tRNA hydrolase proteinchromosome CDS3169971 723 + 0.608575
queA RHE_CH02116 S-adenosylmethionine: tRNA ribosyltransferase-isomerase (Queuosine biosynthesis)proteinchromosome CDS2215897 1086 + 0.642726
rbfA RHE_CH00115 ribosome binding factor A, rRNA processing proteinchromosome CDS124475 411 - 0.59854
rhlE1 RHE_CH02265 ATP dependent RNA helicase proteinchromosome CDS2367966 1584 + 0.618056
rhlE2 RHE_CH03152 ATP-dependent RNA helicase proteinchromosome CDS3306142 1683 + 0.663102
rimJ RHE_CH00977 alanine acetyltransferase (ribosomal) proteinchromosome CDS1026279 615 - 0.598374
rimM RHE_CH03960 16S rRNA processing proteinchromosome CDS4186629 654 + 0.594801
rluB RHE_CH00835 pseudouridylate synthase, subunit B proteinchromosome CDS875523 1887 + 0.679385
rluC RHE_CH02236 pseudouridylate synthase, ribosomal large subunit C proteinchromosome CDS2337231 954 - 0.63522
rluD RHE_CH03341 pseudouridylate synthase, ribosomal large subunit D proteinchromosome CDS3503266 1065 + 0.625352
rnd1 RHE_CH00095 RNAse D proteinchromosome CDS105297 627 + 0.626794
rnd2 RHE_CH01495 RNase D proteinchromosome CDS1569461 1146 - 0.620419
rne RHE_CH01645 ribonuclease E proteinchromosome CDS1732716 2886 - 0.628205
rnpA RHE_CH00438 ribonuclease P proteinchromosome CDS451465 402 - 0.619403
rph RHE_CH00363 ribonuclease PH proteinchromosome CDS375629 720 - 0.633333
rplA RHE_CH01664 50S ribosomal protein L1chromosome CDS1751938 702 + 0.635328
rplB RHE_CH01678 50S ribosomal protein L2chromosome CDS1770137 837 + 0.621266
rplC RHE_CH01675 50S ribosomal protein L3chromosome CDS1768560 642 + 0.610592
rplD RHE_CH01676 50S ribosomal protein L4chromosome CDS1769215 621 + 0.611916
rplE RHE_CH01687 50S ribosomal protein L5chromosome CDS1774251 558 + 0.589606
rplF RHE_CH01690 50S ribosomal protein L6chromosome CDS1775600 534 + 0.586142
rplI RHE_CH01437 50S ribosomal protein L9chromosome CDS1508722 579 - 0.626943
rplJ RHE_CH01665 50S ribosomal protein L10chromosome CDS1752970 519 + 0.581888
rplK RHE_CH01663 50S ribosomal protein L11chromosome CDS1751502 432 + 0.571759
rplL RHE_CH01666 50S ribosomal protein L7/L12chromosome CDS1753545 384 + 0.585938
rplM RHE_CH01571 50S ribosomal protein L13chromosome CDS1652463 465 - 0.602151
rplN RHE_CH01685 50S ribosomal protein L14chromosome CDS1773569 369 + 0.582656
rplO RHE_CH01694 50S ribosomal protein L15chromosome CDS1777452 477 + 0.624738
rplP RHE_CH01682 50S ribosomal protein L16chromosome CDS1772432 414 + 0.611111
rplQ RHE_CH01700 50S ribosomal protein L17chromosome CDS1782494 423 + 0.65721
rplR RHE_CH01691 50S ribosomal protein L18chromosome CDS1776146 363 + 0.641873
rplS RHE_CH03962 50S ribosomal protein L19chromosome CDS4188196 537 + 0.636872
rplT RHE_CH00262 50S ribosomal protein L20chromosome CDS272941 405 + 0.609877
rplU RHE_CH04062 50S ribosomal protein L21chromosome CDS4307166 318 + 0.606918
rplV RHE_CH01680 50S ribosomal protein L22chromosome CDS1771270 390 + 0.646154
rplW RHE_CH01677 50S ribosomal protein L23chromosome CDS1769832 294 + 0.568027
rplX RHE_CH01686 50S ribosomal protein L24chromosome CDS1773950 309 + 0.595469
rplY RHE_CH03025 50S ribosomal protein L25chromosome CDS3165898 702 + 0.586895
rpmA RHE_CH04063 50S ribosomal protein L27chromosome CDS4307518 270 + 0.592593
rpmB RHE_CH03816 50S ribosomal protein L28chromosome CDS4040452 297 + 0.59596
rpmC RHE_CH01683 50S ribosomal protein L29chromosome CDS1772857 201 + 0.58209
rpmD RHE_CH01693 50S ribosomal protein L30chromosome CDS1777226 210 + 0.590476
rpmE RHE_CH03506 50S ribosomal protein L31chromosome CDS3693815 222 - 0.59009
rpmF RHE_CH04015 50S ribosomal protein L32chromosome CDS4251739 186 + 0.602151
rpmG RHE_CH01634 50S ribosomal protein L33chromosome CDS1718586 168 - 0.482143
rpmH RHE_CH00439 50S ribosomal protein L34chromosome CDS451888 135 - 0.637037
rpmI RHE_CH00261 50S ribosomal protein L35chromosome CDS272698 204 + 0.583333
rpsA RHE_CH00097 30S ribosomal protein S1chromosome CDS107742 1704 - 0.60446
rpsB RHE_CH01913 30S ribosomal protein S2chromosome CDS1994847 768 + 0.611979
rpsC RHE_CH01681 30S ribosomal protein S3chromosome CDS1771659 735 + 0.62449
rpsD RHE_CH02312 30S ribosomal protein S4chromosome CDS2409174 618 - 0.600324
rpsE RHE_CH01692 30S ribosomal protein S5chromosome CDS1776643 570 + 0.633333
rpsF RHE_CH01440 30S ribosomal protein S6chromosome CDS1510727 459 - 0.620915
rpsG RHE_CH01671 30S ribosomal protein S7chromosome CDS1764065 471 + 0.596603
rpsH RHE_CH01689 30S ribosomal protein S8chromosome CDS1775159 399 + 0.588972
rpsI RHE_CH01570 30S ribosomal protein S9chromosome CDS1651993 468 - 0.651709
rpsJ RHE_CH01674 30S ribosomal protein S10chromosome CDS1768218 309 + 0.608414
rpsK RHE_CH01698 30S ribosomal protein S11chromosome CDS1780874 390 + 0.628205
rpsL RHE_CH01670 30S ribosomal protein S12chromosome CDS1763615 372 + 0.591398
rpsM RHE_CH01697 30S ribosomal protein S13chromosome CDS1780372 369 + 0.607046
rpsN RHE_CH01688 30S ribosomal protein S14chromosome CDS1774841 306 + 0.598039
rpsO RHE_CH00112 30S ribosomal protein S15chromosome CDS122180 270 - 0.555556
rpsP RHE_CH03959 30S ribosomal protein S16chromosome CDS4186231 369 + 0.642276
rpsQ RHE_CH01684 30S ribosomal protein S17chromosome CDS1773070 240 + 0.566667
rpsR RHE_CH01439 30S ribosomal protein S18chromosome CDS1510466 249 - 0.646586
rpsS RHE_CH01679 30S ribosomal protein S19chromosome CDS1770989 279 + 0.551971
rpsT RHE_CH00357 30S ribosomal protein S20chromosome CDS369376 279 + 0.637993
rpsUch1 RHE_CH01171 30S ribosomal protein S21chromosome CDS1224850 237 + 0.611814
rpsUch2 RHE_CH03607 30S ribosomal protein S21chromosome CDS3816351 213 + 0.591549
rrf RHE_CH01916 ribosome recycling factor proteinchromosome CDS1997659 561 + 0.59893
serS RHE_CH01826 seryl-tRNA synthetase (serine-tRNA ligase) proteinchromosome CDS1913331 1284 + 0.623832
spoU RHE_CH00393 rRNA methylase protein, TrmH familychromosome CDS409510 861 - 0.652729
sun RHE_CH00305 tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) proteinchromosome CDS313215 1290 - 0.66124
tgt RHE_CH02117 queuine tRNA-ribosyltransferase proteinchromosome CDS2216979 1131 + 0.64191
thrS RHE_CH02196 threonyl-tRNA synthetase proteinchromosome CDS2302639 2007 - 0.605381
tlyA RHE_CH00911 hemolysin proteinchromosome CDS958993 747 - 0.678715
trmD RHE_CH03961 tRNA guanine-N-1-methyltransferase proteinchromosome CDS4187321 663 + 0.662142
trmU RHE_CH03452 tRNA5-methylaminomethyl-2-thiouridylate-methyltr ansferaseproteinchromosome CDS3635085 1227 - 0.647107
trpS RHE_CH00383 tryptophanyl-tRNA synthetase proteinchromosome CDS393052 1065 - 0.621596
truA RHE_CH00415 tRNA pseudouridine synthase A proteinchromosome CDS430324 804 + 0.66791
truB RHE_CH00114 tRNA pseudouridine synthase B proteinchromosome CDS123530 933 - 0.632369
tsf RHE_CH01914 translation elongation factor Ts proteinchromosome CDS1995854 927 + 0.623517
tufA RHE_CH01673 elongation factor EF-Tu proteinchromosome CDS1766733 1179 + 0.614928
tufB RHE_CH01658 elongation factor EF-Tu proteinchromosome CDS1747562 1176 + 0.614796
tyrS RHE_CH02258 tyrosyl-tRNA synthetase proteinchromosome CDS2358166 1257 + 0.621321
valS RHE_CH01811 valyl-tRNA synthetase (valine-tRNA ligase) proteinchromosome CDS1894712 2844 + 0.602321
vbsA RHE_PF00459 N6-hydroxylysine O-acetyltransferase proteinp42f CDS518277 987 + 0.628166