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2024-05-07 10:48:26

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Thiobacillus denitrificans ATCC 25259, ATCC 25259

Number of genes found: 156

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Thiobacillus denitrificans ATCC 25259, ATCC 25259
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Tbd_1881 alpha-D-glucose-1-phosphate cytidylyltransferasechromosome CDS1978510 759 - 0.592885
NA Tbd_2815 DEAD/DEAH box helicasechromosome CDS2896265 1602 - 0.698502
NA Tbd_1447 Possible Sigma 54 modulation protein/ribosomal protein S30EAchromosome CDS1533080 570 - 0.650877
NA Tbd_0532 Possible Sigma 54 modulation protein/ribosomal protein S30EAchromosome CDS557364 336 - 0.574405
NA Tbd_0039 Ribosomal protein L31chromosome CDS40346 207 + 0.623188
NA Tbd_2709 glutamyl-tRNA synthetasechromosome CDS2790566 906 - 0.707506
NA Tbd_0553 alanyl-tRNA synthetase, class IIcchromosome CDS581267 2661 - 0.667418
NA Tbd_1161 RNA methyltransferase TrmH, group 1chromosome CDS1215819 771 + 0.680934
NA Tbd_0921 peptide chain release factor 2chromosome CDS974461 1050 - 0.649524
NA Tbd_0890 hypothetical proteinchromosome CDS938660 264 + 0.632576
NA Tbd_0410 ribosomal protein L22chromosome CDS440354 330 + 0.6
NA Tbd_1258 pseudouridine synthase, Rsuchromosome CDS1320068 891 + 0.690236
NA Tbd_0784 peptidase M24A, methionine aminopeptidase, subfamily 1chromosome CDS827495 810 - 0.661728
NA Tbd_2782 arginyl-tRNA synthetase, class Icchromosome CDS2863428 1674 + 0.674433
NA Tbd_0416 ribosomal protein L24chromosome CDS442818 324 + 0.592593
NA Tbd_0577 valyl-tRNA synthetase, class Iachromosome CDS605816 2739 - 0.64257
NA Tbd_2075 queuine tRNA-ribosyltransferasechromosome CDS2168196 1104 + 0.663043
NA Tbd_1010 ribosomal protein L20chromosome CDS1078718 360 + 0.627778
NA Tbd_0016 Fmu, rRNA SAM-dependent methyltransferasechromosome CDS15974 1257 + 0.702466
NA Tbd_1512 tRNA isopentenyltransferasechromosome CDS1600548 942 - 0.698514
NA Tbd_1564 ribonuclease E and Gchromosome CDS1646206 2622 + 0.690313
NA Tbd_0411 ribosomal protein S3chromosome CDS440695 705 + 0.598582
NA Tbd_2375 tRNA (guanine-N1-)-methyltransferasechromosome CDS2450172 711 + 0.675106
NA Tbd_0810 pseudouridine synthase, RluDchromosome CDS851682 957 + 0.677116
NA Tbd_0388 Ribosomal protein L25chromosome CDS416569 606 + 0.650165
NA Tbd_0595 Histidyl-tRNA synthetase, class IIachromosome CDS623727 1260 + 0.66746
NA Tbd_2376 ribosomal protein L19chromosome CDS2451020 381 + 0.648294
NA Tbd_1764 conserved hypothetical proteinchromosome CDS1856924 1332 - 0.644144
NA Tbd_0853 pseudouridine synthase, Rsuchromosome CDS902371 543 - 0.668508
NA Tbd_2074 queuosine biosynthesis proteinchromosome CDS2167165 1035 + 0.692754
NA Tbd_1857 isoleucyl-tRNA synthetase, class Iachromosome CDS1950620 2790 + 0.6681
NA Tbd_0779 pseudouridine synthase, Rsuchromosome CDS822955 723 + 0.69018
NA Tbd_0851 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS900850 1077 - 0.675023
NA Tbd_1101 DEAD/DEAH box helicasechromosome CDS1160123 1383 + 0.676067
NA Tbd_0968 peptide chain release factor 3chromosome CDS1030200 1632 - 0.658088
NA Tbd_2348 glycyl-tRNA synthetase, alpha subunitchromosome CDS2422164 939 - 0.656017
NA Tbd_0431 ribosomal protein L17chromosome CDS450782 390 + 0.628205
NA Tbd_0696 ribosome-binding factor Achromosome CDS735746 375 - 0.656
NA Tbd_0786 Elongation factor Tschromosome CDS829439 873 + 0.636884
NA Tbd_0459 tyrosyl-tRNA synthetase, class Ibchromosome CDS476495 1191 + 0.623846
NA Tbd_0389 peptidyl-tRNA hydrolasechromosome CDS417213 609 + 0.668309
NA Tbd_0404 Ribosomal protein S10chromosome CDS437212 309 + 0.595469
NA Tbd_0893 lysyl-tRNA synthetase, class-2chromosome CDS942698 1506 - 0.65405
NA Tbd_0419 ribosomal protein S8chromosome CDS444009 396 + 0.621212
NA Tbd_2340 ribosomal RNA 16S rRNA dimethylasechromosome CDS2415310 768 + 0.660156
NA Tbd_1229 seryl-tRNA synthetase, class IIachromosome CDS1287218 1284 + 0.66433
NA Tbd_0609 RNA methyltransferase TrmHchromosome CDS638542 765 + 0.69281
NA Tbd_0414 ribosomal protein S17chromosome CDS441994 264 + 0.609848
NA Tbd_2041 hypothetical proteinchromosome CDS2129486 855 - 0.704094
NA Tbd_0932 hypothetical proteinchromosome CDS988586 369 + 0.571816
NA Tbd_0409 ribosomal protein S19chromosome CDS440068 276 + 0.59058
NA Tbd_0401 Ribosomal protein S7chromosome CDS433388 471 + 0.622081
NA Tbd_0403 translation elongation factor Tuchromosome CDS436008 1191 + 0.623846
NA Tbd_0697 initiation factor 2chromosome CDS736228 2769 - 0.669556
NA Tbd_1902 Cysteinyl-tRNA synthetase, class Iachromosome CDS1998265 1365 - 0.67326
NA Tbd_2826 ribonuclease P protein componentchromosome CDS2909207 300 - 0.71
NA Tbd_0405 ribosomal protein L3chromosome CDS437647 645 + 0.635659
NA Tbd_0259 glutamyl-tRNA(Gln) amidotransferase C subunitchromosome CDS280863 288 - 0.638889
NA Tbd_1131 Protein of unknown function UPF0044chromosome CDS1186529 297 - 0.659933
NA Tbd_2445 leucyl-tRNA synthetase, class Iachromosome CDS2513703 2574 - 0.662782
NA Tbd_0470 YjgF-like proteinchromosome CDS493276 381 - 0.666667
NA Tbd_0658 ribosomal large subunit pseudouridine synthase Achromosome CDS698676 636 + 0.716981
NA Tbd_1463 translation initiation factor IF-1chromosome CDS1548071 264 + 0.609848
NA Tbd_2112 prolyl-tRNA synthetasechromosome CDS2200570 1740 + 0.668391
NA Tbd_0390 Conserved hypothetical proteinchromosome CDS417818 1092 + 0.661172
NA Tbd_2493 peptide chain release factor 1chromosome CDS2566364 1083 + 0.67313
NA Tbd_2102 ribosomal protein L9chromosome CDS2192910 450 - 0.651111
NA Tbd_0095 metallo-beta-lactamase superfamily proteinchromosome CDS100853 1425 + 0.689825
NA Tbd_1005 2',5' RNA ligasechromosome CDS1072649 552 + 0.686594
NA Tbd_1733 DEAD/DEAH box helicasechromosome CDS1817343 1434 - 0.690377
NA Tbd_0864 ribosomal protein L21chromosome CDS915128 312 + 0.596154
NA Tbd_0014 formylmethionine deformylasechromosome CDS14400 534 + 0.668539
NA Tbd_1216 probable cytosine/adenosine deaminaseschromosome CDS1271722 456 + 0.686404
NA Tbd_0693 polyribonucleotide nucleotidyltransferase proteinchromosome CDS732249 2121 - 0.661009
NA Tbd_0394 Ribosomal protein L11chromosome CDS421854 432 + 0.625
NA Tbd_0418 ribosomal protein S14chromosome CDS443691 306 + 0.637255
NA Tbd_2590 ribosomal protein L33chromosome CDS2665075 168 + 0.511905
NA Tbd_2133 putative ribonuclease Ichromosome CDS2219999 840 - 0.683333
NA Tbd_0415 ribosomal protein L14chromosome CDS442440 369 + 0.609756
NA Tbd_0788 ribosome recycling factorchromosome CDS831039 570 + 0.633333
NA Tbd_0406 ribosomal protein L4chromosome CDS438291 618 + 0.619741
NA Tbd_2335 putative nucleotidyl transferasechromosome CDS2409044 714 - 0.689076
NA Tbd_0423 ribosomal protein L30chromosome CDS445853 186 + 0.607527
NA Tbd_1553 Ribosomal protein S32chromosome CDS1637223 180 - 0.622222
NA Tbd_0509 RNA-binding S4 proteinchromosome CDS535619 405 + 0.708642
NA Tbd_0907 conserved hypothetical protein containing BNR repeatchromosome CDS962871 1188 + 0.713805
NA Tbd_0865 ribosomal protein L27chromosome CDS915452 264 + 0.628788
NA Tbd_0429 ribosomal protein S4chromosome CDS449046 630 + 0.619048
NA Tbd_0421 ribosomal protein L18chromosome CDS444965 354 + 0.638418
NA Tbd_1008 initiation factor 3chromosome CDS1077920 468 + 0.576923
NA Tbd_2706 tRNA-i(6)A37 modification enzyme MiaBchromosome CDS2787631 1386 - 0.63925
NA Tbd_0257 glutamyl-tRNA(Gln) amidotransferase B subunitchromosome CDS277945 1428 - 0.658263
NA Tbd_2456 dihydrouridine synthasechromosome CDS2527115 1053 + 0.68566
NA Tbd_2494 modification methylase HemKchromosome CDS2567450 864 + 0.725694
NA Tbd_2437 ribonuclease E and Gchromosome CDS2507340 1452 - 0.641185
NA Tbd_1854 ribosomal protein S20pchromosome CDS1947628 264 - 0.632576
NA Tbd_0857 Elongation factor Pchromosome CDS906100 561 + 0.604278
NA Tbd_1525 tryptophanyl-tRNA synthetase, class Ibchromosome CDS1612617 1203 - 0.637573
NA Tbd_0422 ribosomal protein S5chromosome CDS445334 516 + 0.625969
NA Tbd_0956 ribosomal protein S1chromosome CDS1018524 1722 + 0.619048
NA Tbd_0453 ribosomal protein L13chromosome CDS471433 447 + 0.579418
NA Tbd_0396 ribosomal protein L10chromosome CDS423260 522 + 0.616858
NA Tbd_2105 ribosomal protein S6chromosome CDS2193956 384 - 0.632812
NA Tbd_2409 glutathione synthetasechromosome CDS2480897 945 + 0.685714
NA Tbd_0015 methionyl-tRNA formyltransferasechromosome CDS14943 930 + 0.744086
NA Tbd_0780 formylmethionine deformylasechromosome CDS823656 534 + 0.685393
NA Tbd_0454 ribosomal protein S9chromosome CDS471876 393 + 0.631043
NA Tbd_1527 putative translation factor Sua5chromosome CDS1614559 624 - 0.679487
NA Tbd_0407 ribosomal protein L23chromosome CDS438908 306 + 0.604575
NA Tbd_2347 glycyl-tRNA synthetase, beta subunitchromosome CDS2420062 2106 - 0.667141
NA Tbd_0413 ribosomal protein L29chromosome CDS441803 195 + 0.589744
NA Tbd_0477 ribonuclease PHchromosome CDS499637 735 + 0.696599
NA Tbd_2385 ribosomal protein S21chromosome CDS2457530 213 + 0.605634
NA Tbd_0695 tRNA pseudouridine synthase Bchromosome CDS734853 897 - 0.703456
NA Tbd_0417 ribosomal protein L5chromosome CDS443144 540 + 0.574074
NA Tbd_0258 glutamyl-tRNA(Gln) amidotransferase A subunitchromosome CDS279369 1458 - 0.672154
NA Tbd_1453 glutathione synthase/ribosomal protein S6 modification enzyme (glutaminyl transferase)chromosome CDS1536238 1473 + 0.675492
NA Tbd_0420 ribosomal protein L6chromosome CDS444417 531 + 0.629002
NA Tbd_0391 translation elongation factor Tuchromosome CDS419487 1191 + 0.623006
NA Tbd_2103 ribosomal protein S18chromosome CDS2193370 288 - 0.618056
NA Tbd_0402 translation elongation factor Gchromosome CDS433889 2091 + 0.613582
NA Tbd_0442 aspartyl-tRNA synthetasechromosome CDS462569 1794 + 0.647157
NA Tbd_1952 hypothetical proteinchromosome CDS2046048 369 + 0.674797
NA Tbd_1132 cell division protein FtsJchromosome CDS1186875 663 + 0.638009
NA Tbd_1563 pseudouridine synthase, RluDchromosome CDS1644823 969 - 0.648091
NA Tbd_0412 ribosomal protein L16chromosome CDS441383 417 + 0.654676
NA Tbd_0427 ribosomal protein S13chromosome CDS448272 357 + 0.616247
NA Tbd_2374 16S rRNA processing protein RimMchromosome CDS2449603 570 + 0.64386
NA Tbd_0408 ribosomal protein L2chromosome CDS439225 828 + 0.683575
NA Tbd_1007 threonyl-tRNA synthetase, class IIachromosome CDS1075850 1914 + 0.64629
NA Tbd_2827 ribosomal protein L34chromosome CDS2909617 135 - 0.674074
NA Tbd_2360 putative tRNA nucleotidyltransferase/poly(A) polymerasechromosome CDS2433239 1629 - 0.6814
NA Tbd_0615 tRNA/rRNA methyltransferasechromosome CDS644382 783 + 0.730524
NA Tbd_2589 ribosomal protein L28chromosome CDS2664826 237 + 0.607595
NA Tbd_0785 Ribosomal protein S2chromosome CDS828576 747 + 0.641232
NA Tbd_0395 Ribosomal protein L1chromosome CDS422287 696 + 0.668103
NA Tbd_1916 tRNA pseudouridine synthasechromosome CDS2011555 783 - 0.689655
NA Tbd_0180 ribosomal protein L11 methyltransferasechromosome CDS192792 891 - 0.702581
NA Tbd_0397 Ribosomal protein L7/L12chromosome CDS423847 384 + 0.640625
NA Tbd_0426 translation initiation factor IF-1chromosome CDS447805 219 + 0.538813
NA Tbd_0694 ribosomal protein S15chromosome CDS734494 270 - 0.622222
NA Tbd_0428 ribosomal protein S11chromosome CDS448638 393 + 0.625954
NA Tbd_1011 phenylalanyl-tRNA synthetase, alpha subunitchromosome CDS1079147 1035 + 0.661836
NA Tbd_1009 ribosomal protein L35chromosome CDS1078509 198 + 0.59596
NA Tbd_0970 23S rRNA methyltransferase/RumAchromosome CDS1033581 1299 - 0.690531
NA Tbd_2050 poly(A) polymerase, PcnBchromosome CDS2138010 1389 + 0.691865
NA Tbd_0850 glutaminyl-tRNA synthetasechromosome CDS899113 1698 - 0.636631
NA Tbd_0435 pseudouridine synthase, Rsuchromosome CDS453878 738 - 0.695122
NA Tbd_0400 Ribosomal protein S12mchromosome CDS432922 378 + 0.642857
NA Tbd_2460 probable Sua5/YciO/YrdC family proteinchromosome CDS2531387 567 + 0.728395
NA Tbd_1270 modification methylase HemKchromosome CDS1336068 927 - 0.670982
NA Tbd_2407 RNA methyltransferase CspRchromosome CDS2479111 465 - 0.673118
NA Tbd_1734 glutamyl-tRNA synthetasechromosome CDS1819182 1419 + 0.67019
NA Tbd_2598 putative tRNA and rRNA cytosine-C5-methylasechromosome CDS2674721 1248 - 0.680288
NA Tbd_0424 ribosomal protein L15chromosome CDS446039 435 + 0.652874
NA Tbd_1523 conserved hypothetical proteinchromosome CDS1610838 426 + 0.685446