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2024-05-06 14:11:16

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Pseudomonas fluorescens PfO-1, PfO-1

Number of genes found: 216

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Pseudomonas fluorescens PfO-1, PfO-1
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Pfl_1337 Amidasechromosome CDS1510435 1773 - 0.650874
NA Pfl_1935 Phenylalanyl-tRNA synthetase, alpha subunitchromosome CDS2203686 1017 + 0.574238
NA Pfl_5248 DEAD/DEAH box helicase-likechromosome CDS5908288 1437 + 0.626305
NA Pfl_1101 Ribosomal protein S2chromosome CDS1275059 738 + 0.552846
NA Pfl_5056 Ribosomal protein S4chromosome CDS5693395 621 - 0.555556
NA Pfl_5079 Ribosomal protein L3chromosome CDS5704616 636 - 0.559748
NA Pfl_1484 conserved hypothetical proteinchromosome CDS1664606 411 - 0.615572
NA Pfl_3582 tRNA synthetase, class II (G, H, P and S)chromosome CDS4047794 1281 - 0.619828
NA Pfl_4860 Ribosomal protein L21chromosome CDS5479632 312 - 0.528846
NA Pfl_3267 Endoribonuclease L-PSPchromosome CDS3749521 417 + 0.618705
NA Pfl_4633 conserved hypothetical proteinchromosome CDS5232135 1920 + 0.615625
NA Pfl_3638 Cysteinyl-tRNA synthetase, class Iachromosome CDS4113475 1383 - 0.615329
NA Pfl_3824 Dihydrouridine synthase TIM-barrel protein yjbNchromosome CDS4324333 996 + 0.619478
NA Pfl_2899 hypothetical proteinchromosome CDS3343088 810 - 0.52716
NA Pfl_5636 GCN5-related N-acetyltransferasechromosome CDS6311342 672 + 0.627976
NA Pfl_5058 Ribosomal protein S13chromosome CDS5694454 357 - 0.535014
NA Pfl_1932 Initiation factor 3chromosome CDS2202401 534 + 0.522472
NA Pfl_5069 Ribosomal protein L14chromosome CDS5700252 369 - 0.533875
NA Pfl_4712 Methyltransferase smallchromosome CDS5320633 999 + 0.616617
NA Pfl_2382 Endoribonuclease L-PSPchromosome CDS2741172 381 + 0.616798
NA Pfl_1692 Pseudouridine synthasechromosome CDS1889796 636 - 0.63522
NA Pfl_1100 Peptidase M24A, methionine aminopeptidase, subfamily 1chromosome CDS1273902 783 - 0.598978
NA Pfl_0733 GCN5-related N-acetyltransferasechromosome CDS861216 579 + 0.609672
NA Pfl_5060 Ribosomal protein L15chromosome CDS5696414 438 - 0.579909
NA Pfl_4166 Ribonuclease E and Gchromosome CDS4701795 3249 + 0.628193
NA Pfl_3596 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS4064811 1125 + 0.608889
NA Pfl_2287 hypothetical proteinchromosome CDS2637644 408 + 0.526961
NA Pfl_1060 Lysyl-tRNA synthetase, class-2chromosome CDS1228949 1500 + 0.608
NA Pfl_5087 Ribosomal protein L7/L12chromosome CDS5718888 366 - 0.508197
NA Pfl_3392 tRNA--hydroxylasechromosome CDS3868833 609 - 0.609195
NA Pfl_4754 Ribosomal protein L25chromosome CDS5358123 603 + 0.552239
NA Pfl_1492 Pseudouridine synthase, Rsuchromosome CDS1669825 1218 + 0.638752
NA Pfl_5525 Endoribonuclease L-PSPchromosome CDS6194796 321 - 0.613707
NA Pfl_2862 Endoribonuclease L-PSPchromosome CDS3302471 405 + 0.553086
NA Pfl_3964 Pseudouridine synthasechromosome CDS4489771 894 - 0.587248
NA Pfl_5080 Ribosomal protein S10chromosome CDS5705332 312 - 0.522436
NA Pfl_3639 Glutaminyl-tRNA synthetasechromosome CDS4114878 1701 - 0.620811
NA Pfl_0535 Ribosomal protein S18chromosome CDS622226 231 + 0.5671
NA Pfl_0402 nuclease (SNase-like)chromosome CDS456586 783 + 0.652618
NA Pfl_0781 tRNA pseudouridine synthase Bchromosome CDS916819 918 + 0.607843
NA Pfl_3360 hypothetical proteinchromosome CDS3836151 987 + 0.446809
NA Pfl_1933 Ribosomal protein L35chromosome CDS2202995 195 + 0.507692
NA Pfl_5071 Ribosomal protein L29chromosome CDS5700913 192 - 0.536458
NA Pfl_0922 ribosomal subunit interface protein, putativechromosome CDS1072690 408 + 0.551471
NA Pfl_0842 Ribonuclease E and Gchromosome CDS989737 1479 + 0.586207
NA Pfl_4600 Histidyl-tRNA synthetase, class IIachromosome CDS5201295 1290 - 0.603876
NA Pfl_0010 glycyl-tRNA synthetase, alpha subunitchromosome CDS12872 954 - 0.621593
NA Pfl_4643 Endoribonuclease L-PSPchromosome CDS5241754 492 - 0.577236
NA Pfl_4920 DEAD/DEAH box helicase-likechromosome CDS5543424 1341 - 0.623415
NA Pfl_4411 Aspartyl-tRNA synthetasechromosome CDS4970037 1776 - 0.61036
NA Pfl_2051 hypothetical proteinchromosome CDS2338855 303 + 0.567657
NA Pfl_0732 GCN5-related N-acetyltransferasechromosome CDS860485 588 - 0.620748
NA Pfl_5213 hypothetical proteinchromosome CDS5861772 1449 + 0.572809
NA Pfl_0533 RNA methyltransferase TrmH, group 3chromosome CDS620695 768 + 0.640625
NA Pfl_1212 conserved hypothetical proteinchromosome CDS1384390 1035 - 0.654106
NA Pfl_3999 Elongation factor P/YeiPchromosome CDS4527570 570 - 0.54386
NA Pfl_1934 Ribosomal protein L20chromosome CDS2203220 357 + 0.52381
NA Pfl_4756 GTP-binding protein, HSR1-likechromosome CDS5359504 1101 + 0.607629
NA Pfl_0835 Glutamyl-tRNA(Gln) amidotransferase B subunitchromosome CDS982844 1446 - 0.609959
NA Pfl_3987 DEAD/DEAH box helicase-likechromosome CDS4515795 1674 - 0.616487
NA Pfl_5130 Nucleotidyl transferasechromosome CDS5764273 672 - 0.625
NA Pfl_3589 Translation initiation factor IF-1chromosome CDS4055999 219 + 0.515982
NA Pfl_5147 Ribosomal protein S21chromosome CDS5783098 216 + 0.541667
NA Pfl_4950 tRNA-i(6)A37 modification enzyme MiaBchromosome CDS5577486 1329 + 0.62754
NA Pfl_1896 Pseudouridylate synthasechromosome CDS2167466 825 + 0.62303
NA Pfl_0399 Arginyl-tRNA synthetase, class Icchromosome CDS452059 1737 - 0.620035
NA Pfl_5072 Ribosomal protein L16chromosome CDS5701104 414 - 0.565217
NA Pfl_1787 Ribosome modulation factorchromosome CDS1988776 216 - 0.546296
NA Pfl_5536 Ribosomal protein L33chromosome CDS6205909 156 - 0.455128
NA Pfl_5568 hypothetical proteinchromosome CDS6235506 456 - 0.587719
NA Pfl_2273 GCN5-related N-acetyltransferasechromosome CDS2624589 516 - 0.594961
NA Pfl_4852 Isoleucyl-tRNA synthetase, class Iachromosome CDS5470099 2832 - 0.621822
NA Pfl_0807 Peptide chain release factor 3chromosome CDS951785 1584 + 0.606061
NA Pfl_5062 Ribosomal protein S5chromosome CDS5697034 501 - 0.542914
NA Pfl_5547 Ribonuclease PHchromosome CDS6215466 723 - 0.621024
NA Pfl_5142 Polynucleotide adenylyltransferase regionchromosome CDS5779071 1230 + 0.605691
NA Pfl_5309 Glutathione synthetasechromosome CDS5974873 951 + 0.62776
NA Pfl_4957 Leucyl-tRNA synthetase class Iachromosome CDS5584314 2607 + 0.616801
NA Pfl_1022 Ribosomal protein L19chromosome CDS1186042 351 + 0.532764
NA Pfl_0537 Ribosomal protein L9chromosome CDS623403 447 + 0.592841
NA Pfl_1293 Amidasechromosome CDS1468540 1458 + 0.660494
NA Pfl_4275 Alanyl-tRNA synthetase, class IIcchromosome CDS4822883 2625 - 0.614095
NA Pfl_5627 Asparaginase/glutaminasechromosome CDS6302085 1008 + 0.655754
NA Pfl_5057 Ribosomal protein S11chromosome CDS5694034 390 - 0.571795
NA Pfl_5552 YjgF-like proteinchromosome CDS6220572 381 + 0.582677
NA Pfl_1437 DEAD/DEAH box helicase-likechromosome CDS1612101 1341 + 0.615958
NA Pfl_4621 Queuine tRNA-ribosyltransferasechromosome CDS5219534 1134 - 0.60582
NA Pfl_4836 Pseudouridine synthase, RluDchromosome CDS5455241 963 - 0.635514
NA Pfl_2344 lipoprotein, putativechromosome CDS2705375 462 - 0.625541
NA Pfl_3807 Ribonuclease T2chromosome CDS4308431 660 - 0.607576
NA Pfl_1388 Ribonuclease Dchromosome CDS1561967 1134 + 0.643739
NA Pfl_5283 DEAD/DEAH box helicase-likechromosome CDS5944390 1869 + 0.651685
NA Pfl_3257 Amidasechromosome CDS3737776 1713 + 0.660245
NA Pfl_4584 Cytidine/deoxycytidylate deaminase, zinc-binding regionchromosome CDS5180610 498 - 0.65261
NA Pfl_5081 Translation elongation factor Tuchromosome CDS5705801 1194 - 0.556114
NA Pfl_4694 Ribosomal protein L13chromosome CDS5295984 429 - 0.543124
NA Pfl_5067 Ribosomal protein L5chromosome CDS5699366 540 - 0.537037
NA Pfl_1059 Peptide chain release factor 2chromosome CDS1227991 843 + 0.606168
NA Pfl_0337 RNA methyltransferase TrmH, group 2chromosome CDS381462 456 - 0.638158
NA Pfl_2663 hypothetical proteinchromosome CDS3057575 1632 + 0.553309
NA Pfl_4160 Ribosomal protein S32chromosome CDS4697015 183 - 0.551913
NA Pfl_1019 Ribosomal protein S16chromosome CDS1184447 252 + 0.56746
NA Pfl_0626 translation initiation factor SUI1chromosome CDS736808 372 + 0.637097
NA Pfl_5064 Ribosomal protein L6chromosome CDS5697899 534 - 0.561798
NA Pfl_0759 SmpA/OmlAchromosome CDS891231 528 - 0.573864
NA Pfl_0782 Ribosomal protein S15chromosome CDS917878 270 + 0.551852
NA Pfl_1020 16S rRNA processing protein RimMchromosome CDS1184704 537 + 0.558659
NA Pfl_1335 Pseudouridine synthase, Rsuchromosome CDS1507830 693 - 0.611833
NA Pfl_0783 3' exoribonucleasechromosome CDS918342 2106 + 0.594492
NA Pfl_0270 conserved hypothetical proteinchromosome CDS316482 315 - 0.473016
NA Pfl_2367 Endoribonuclease L-PSPchromosome CDS2726231 405 - 0.614815
NA Pfl_1554 hypothetical proteinchromosome CDS1740453 1905 - 0.52126
NA Pfl_4165 Pseudouridine synthase, RluDchromosome CDS4700133 963 - 0.599169
NA Pfl_1882 Dihydrouridine synthase, DuSchromosome CDS2146841 960 + 0.642708
NA Pfl_4079 Initiation factor 2B alpha/beta/deltachromosome CDS4610773 1077 - 0.632312
NA Pfl_4917 GCN5-related N-acetyltransferasechromosome CDS5540192 570 - 0.619298
NA Pfl_5093 Translation elongation factor Tuchromosome CDS5722362 1194 - 0.552764
NA Pfl_0017 Formylmethionine deformylasechromosome CDS19501 507 - 0.568047
NA Pfl_0015 Fmu, rRNA SAM-dependent methyltransferasechromosome CDS17178 1311 - 0.649123
NA Pfl_4859 Ribosomal protein L27chromosome CDS5479339 258 - 0.554264
NA Pfl_1931 Threonyl-tRNA synthetase, class IIachromosome CDS2200461 1923 + 0.574623
NA Pfl_5135 16S rRNA dimethylasechromosome CDS5771184 819 + 0.628816
NA Pfl_1760 Alpha-L-glutamate ligase-related proteinchromosome CDS1955054 987 - 0.613982
NA Pfl_5082 Translation elongation factor Gchromosome CDS5707026 2106 - 0.553181
NA Pfl_0615 Dihydrouridine synthase TIM-barrel protein nifR3chromosome CDS723085 1011 - 0.624135
NA Pfl_0265 RNA-binding S4chromosome CDS312122 408 + 0.60049
NA Pfl_0780 Ribosome-binding factor Achromosome CDS916413 402 + 0.604478
NA Pfl_1510 Nucleotidyl transferasechromosome CDS1697643 774 + 0.593023
NA Pfl_4072 Ribosomal protein S1chromosome CDS4599589 1686 - 0.549822
NA Pfl_0157 Sulfotransferasechromosome CDS189624 846 + 0.622931
NA Pfl_5068 Ribosomal protein L24chromosome CDS5699926 315 - 0.520635
NA Pfl_2707 Translation elongation factor, selenocysteine-specificchromosome CDS3117177 1911 + 0.653585
NA Pfl_0836 Glutamyl-tRNA(Gln) amidotransferase A subunitchromosome CDS984300 1452 - 0.629477
NA Pfl_1494 Class I peptide chain release factorchromosome CDS1673393 414 + 0.623188
NA Pfl_4063 GCN5-related N-acetyltransferasechromosome CDS4587435 513 + 0.551657
NA Pfl_3304 hypothetical proteinchromosome CDS3785748 378 + 0.656085
NA Pfl_0770 Protein of unknown function UPF0044chromosome CDS904732 309 - 0.537217
NA Pfl_0016 Methionyl-tRNA formyltransferasechromosome CDS18485 960 - 0.646875
NA Pfl_0522 tRNA isopentenyltransferasechromosome CDS604984 972 + 0.581276
NA Pfl_2730 Cytidine/deoxycytidylate deaminase, zinc-binding regionchromosome CDS3147214 510 + 0.623529
NA Pfl_1102 Elongation factor Tschromosome CDS1275987 864 + 0.553241
NA Pfl_5083 Ribosomal protein S7chromosome CDS5709162 474 - 0.567511
NA Pfl_5065 Ribosomal protein S8chromosome CDS5698445 393 - 0.541985
NA Pfl_4699 Tryptophanyl-tRNA synthetase, class Ibchromosome CDS5301329 1356 - 0.623894
NA Pfl_0779 Initiation factor 2chromosome CDS913740 2514 + 0.60541
NA Pfl_4218 23S rRNA methyltransferase/RumAchromosome CDS4760738 1386 - 0.623377
NA Pfl_1189 RNA-binding S4chromosome CDS1356328 711 - 0.648383
NA Pfl_1719 Modification methylase HemKchromosome CDS1912647 909 + 0.619362
NA Pfl_1021 tRNA (guanine-N1-)-methyltransferasechromosome CDS1185244 753 + 0.575033
NA Pfl_0856 Sigma-54 modulation protein/ribosomal protein S30EAchromosome CDS1005090 309 - 0.511327
NA Pfl_5090 Ribosomal protein L11chromosome CDS5720727 432 - 0.55787
NA Pfl_5089 Ribosomal protein L1chromosome CDS5720032 696 - 0.563218
NA Pfl_4898 tRNA (uracil-5-)-methyltransferasechromosome CDS5522165 1080 + 0.625926
NA Pfl_4304 Amidasechromosome CDS4860451 1518 - 0.605402
NA Pfl_0837 Glutamyl-tRNA(Gln) amidotransferase C subunitchromosome CDS985768 288 - 0.583333
NA Pfl_3274 iron-sulfur cluster-binding proteinchromosome CDS3756408 663 - 0.595777
NA Pfl_5088 Ribosomal protein L10chromosome CDS5719333 501 - 0.556886
NA Pfl_4622 Queuosine biosynthesis proteinchromosome CDS5220664 1050 - 0.624762
NA Pfl_0986 Valyl-tRNA synthetase, class Iachromosome CDS1145360 2847 - 0.614331
NA Pfl_5061 Ribosomal protein L30chromosome CDS5696855 177 - 0.519774
NA Pfl_2617 conserved hypothetical proteinchromosome CDS2995232 1575 + 0.578413
NA Pfl_4747 Modification methylase HemKchromosome CDS5350301 831 - 0.65704
NA Pfl_5070 Ribosomal protein S17chromosome CDS5700644 267 - 0.52809
NA Pfl_5075 Ribosomal protein S19chromosome CDS5702574 276 - 0.521739
NA Pfl_4855 Ribosomal protein S20pchromosome CDS5475803 273 + 0.52381
NA Pfl_0971 DEAD/DEAH box helicase-likechromosome CDS1130745 1479 - 0.631508
NA Pfl_4349 Formylmethionine deformylasechromosome CDS4902581 540 - 0.612963
NA Pfl_5432 conserved hypothetical proteinchromosome CDS6100068 486 - 0.602881
NA Pfl_5084 Ribosomal protein S12chromosome CDS5709744 372 - 0.564516
NA Pfl_3942 hypothetical proteinchromosome CDS4468378 1014 - 0.612426
NA Pfl_0372 D-tyrosyl-tRNA(Tyr) deacylasechromosome CDS424919 438 + 0.593607
NA Pfl_5077 Ribosomal L23 proteinchromosome CDS5703705 300 - 0.516667
NA Pfl_3127 Enoyl-CoA hydratase/isomerasechromosome CDS3589724 1719 + 0.635253
NA Pfl_4941 Pseudouridine synthase, Rsuchromosome CDS5566740 636 - 0.644654
NA Pfl_5066 Ribosomal protein S14chromosome CDS5699047 306 - 0.575163
NA Pfl_5063 Ribosomal protein L18chromosome CDS5697538 351 - 0.584046
NA Pfl_1197 Prolyl-tRNA synthetasechromosome CDS1368425 1716 - 0.617716
NA Pfl_5098 Tyrosyl-tRNA synthetase, class Ibchromosome CDS5732113 1200 - 0.544167
NA Pfl_1878 Glutamyl-tRNA synthetasechromosome CDS2142449 1545 + 0.605178
NA Pfl_0020 SUA5/yciO/yrdC-likechromosome CDS22437 558 + 0.630824
NA Pfl_1917 L-asparaginase, type IIchromosome CDS2188981 1089 - 0.587695
NA Pfl_1104 Ribosome recycling factorchromosome CDS1277802 558 + 0.578853
NA Pfl_5054 Ribosomal protein L17chromosome CDS5691938 387 - 0.578811
NA Pfl_2096 Methyltransferase smallchromosome CDS2381370 954 + 0.631027
NA Pfl_4805 Glutamyl-tRNA synthetase, class Icchromosome CDS5419482 897 + 0.649944
NA Pfl_3088 Endoribonuclease L-PSPchromosome CDS3538007 390 - 0.612821
NA Pfl_4809 Poly(A) polymerase, PcnBchromosome CDS5425764 1401 + 0.623126
NA Pfl_4748 Peptide chain release factor 1chromosome CDS5351132 1083 - 0.608495
NA Pfl_5537 Ribosomal protein L28chromosome CDS6206076 234 - 0.542735
NA Pfl_4890 Methyltransferase smallchromosome CDS5514075 1125 + 0.629333
NA Pfl_5074 Ribosomal protein L22chromosome CDS5702230 333 - 0.567568
NA Pfl_1191 conserved hypothetical proteinchromosome CDS1357707 1338 - 0.617339
NA Pfl_2116 2',5' RNA ligasechromosome CDS2401694 540 + 0.659259
NA Pfl_1395 tRNA/rRNA methyltransferase (SpoU)chromosome CDS1567581 537 - 0.614525
NA Pfl_4693 Ribosomal protein S9chromosome CDS5295577 393 - 0.572519
NA Pfl_5512 conserved hypothetical proteinchromosome CDS6177296 2316 + 0.634283
NA Pfl_0771 Ribosomal RNA methyltransferase RrmJ/FtsJchromosome CDS905142 630 + 0.560317
NA Pfl_0262 S6 modification enzyme RimKchromosome CDS309828 906 - 0.613687
NA Pfl_5745 ribonuclease P proteinchromosome CDS6437849 402 - 0.549751
NA Pfl_2736 Endoribonuclease L-PSPchromosome CDS3153871 417 + 0.594724
NA Pfl_5073 ribosomal protein S3chromosome CDS5701530 687 - 0.537118
NA Pfl_3245 Peptidase M24A, methionine aminopeptidase, subfamily 1chromosome CDS3726036 792 - 0.587121
NA Pfl_2374 Endoribonuclease L-PSPchromosome CDS2732911 396 - 0.606061
NA Pfl_5078 Ribosomal protein L4/L1echromosome CDS5704001 603 - 0.553897
NA Pfl_0401 Ribosomal protein L31chromosome CDS456326 219 + 0.552511
NA Pfl_0009 glycyl-tRNA synthetase, beta subunitchromosome CDS10821 2055 - 0.636496
NA Pfl_4755 Peptidyl-tRNA hydrolasechromosome CDS5358897 585 + 0.598291
NA Pfl_0617 Ribosomal protein L11 methyltransferasechromosome CDS725580 879 - 0.653015
NA Pfl_3487 hypothetical proteinchromosome CDS3970042 1047 + 0.511939
NA Pfl_4615 RNA methyltransferase TrmH, group 1chromosome CDS5213793 795 - 0.613836
NA Pfl_5076 Ribosomal protein L2chromosome CDS5702866 825 - 0.573333
NA Pfl_0534 Ribosomal protein S6chromosome CDS621769 429 + 0.571096
NA Pfl_2314 YjgF-like proteinchromosome CDS2668643 432 - 0.625
NA Pfl_1488 Sua5/YciO/YrdC/YwlCchromosome CDS1667003 630 + 0.611111
NA Pfl_1258 Endoribonuclease L-PSPchromosome CDS1432791 471 - 0.62845
NA Pfl_2843 NAD-dependent epimerase/dehydratasechromosome CDS3280042 2007 + 0.62581