Gene list
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COG category: Translation, ribosomal structure and biogenesis
Organism: Shigella sonnei Ss046, Ss046
Number of genes found: 180
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Shigella sonnei Ss046, Ss046 | |||||||||
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Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | SSO_1352 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1426399 | 393 | - | 0.503817 |
NA | SSO_2614 | putative ATP synthase beta subunit | RecName: Full=tRNA (cytidine/uridine-2-O-)-methyltransferase TrmJ; EC=2.1.1.200; AltName: Full=tRNA (cytidine(32)/uridine(32)-2-O)-methyltransferase; AltName: Full=tRNA Cm32/Um32 methyltransferase; | chromosome | CDS | 2765778 | 738 | - | 0.547425 |
NA | SSO_2316 | putative transformylase | RecName: Full=Bifunctional polymyxin resistance protein ArnA; Includes: RecName: Full=UDP-4-amino-4-deoxy-L-arabinose formyltransferase; EC=2.1.2.13; AltName: Full=ArnAFT; AltName: Full=UDP-L-Ara4N formyltransferase; Includes: RecName: Full=UDP-glucuronic acid oxidase, UDP-4-keto-hexauronic acid decarboxylating; EC=1.1.1.305; AltName: Full=ArnADH; AltName: Full=UDP-GlcUA decarboxylase; AltName: Full=UDP-glucuronic acid dehydrogenase; | chromosome | CDS | 2443874 | 1983 | + | 0.512355 |
NA | SSO_1271 | hypothetical bacteriophage protein | SubName: Full=Hypothetical bacteriophage protein; | chromosome | CDS | 1345257 | 624 | + | 0.525641 |
NA | SSO_P208 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | pSS_046 | CDS | 182829 | 288 | + | 0.395833 |
alaS | SSO_2841 | alanyl-tRNA synthetase | RecName: Full=Alanine--tRNA ligase; EC=6.1.1.7; AltName: Full=Alanyl-tRNA synthetase; Short=AlaRS; | chromosome | CDS | 2980471 | 2631 | - | 0.536678 |
ansA | SSO_1388 | cytoplasmic L-asparaginase I | SubName: Full=Cytoplasmic L-asparaginase I; | chromosome | CDS | 1461663 | 1017 | - | 0.511308 |
ansB | SSO_3239 | periplasmic L-asparaginase II | SubName: Full=Periplasmic L-asparaginase II; | chromosome | CDS | 3414394 | 1047 | + | 0.527221 |
argS | SSO_1242 | arginine tRNA synthetase | RecName: Full=Arginine--tRNA ligase; EC=6.1.1.19; AltName: Full=Arginyl-tRNA synthetase; Short=ArgRS; | chromosome | CDS | 1316621 | 1737 | - | 0.528497 |
asnS | SSO_0933 | asparagine tRNA synthetase | RecName: Full=Asparagine--tRNA ligase; EC=6.1.1.22; AltName: Full=Asparaginyl-tRNA synthetase; Short=AsnRS; | chromosome | CDS | 1004729 | 1401 | - | 0.528908 |
aspS | SSO_1275 | aspartate tRNA synthetase | RecName: Full=Aspartate--tRNA ligase; EC=6.1.1.12; AltName: Full=Aspartyl-tRNA synthetase; Short=AspRS; | chromosome | CDS | 1349891 | 1773 | + | 0.537507 |
cafA | SSO_3388 | bundles of cytoplasmic filaments | SubName: Full=Bundles of cytoplasmic filaments; | chromosome | CDS | 3569113 | 1488 | - | 0.521505 |
cca | SSO_3193 | tRNA nucleotidyl transferase | RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; EC=2.7.7.72; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2-nucleotidase; EC=3.1.3.-; Includes: RecName: Full=2,3-cyclic phosphodiesterase; EC=3.1.4.-; Includes: RecName: Full=Phosphatase; EC=3.1.3.-; | chromosome | CDS | 3356139 | 1239 | + | 0.560129 |
cysS | SSO_0492 | cysteine tRNA synthetase | RecName: Full=Cysteine--tRNA ligase; EC=6.1.1.16; AltName: Full=Cysteinyl-tRNA synthetase; Short=CysRS; | chromosome | CDS | 521289 | 1386 | - | 0.541126 |
dbpA | SSO_1788 | ATP-dependent RNA helicase | RecName: Full=ATP-dependent RNA helicase DbpA; EC=3.6.4.13; | chromosome | CDS | 1884246 | 1374 | - | 0.515284 |
deaD | SSO_3308 | inducible ATP-independent RNA helicase | RecName: Full=ATP-dependent RNA helicase DeaD; EC=3.6.4.13; AltName: Full=Cold-shock DEAD box protein A; | chromosome | CDS | 3482909 | 1941 | - | 0.552808 |
def | SSO_3427 | peptide deformylase | RecName: Full=Peptide deformylase; Short=PDF; EC=3.5.1.88; AltName: Full=Polypeptide deformylase; | chromosome | CDS | 3606490 | 510 | + | 0.466667 |
efp | SSO_4331 | elongation factor P | RecName: Full=Elongation factor P; Short=EF-P; | chromosome | CDS | 4602205 | 567 | + | 0.499118 |
fmt | SSO_3428 | 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase | RecName: Full=Methionyl-tRNA formyltransferase; EC=2.1.2.9; | chromosome | CDS | 3607014 | 948 | + | 0.531646 |
frr | SSO_0184 | ribosome releasing factor | RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor; | chromosome | CDS | 207793 | 558 | + | 0.508961 |
ftsJ | SSO_3327 | cell division protein | RecName: Full=Ribosomal RNA large subunit methyltransferase E; EC=2.1.1.166; AltName: Full=23S rRNA Um2552 methyltransferase; AltName: Full=rRNA (uridine-2-O-)-methyltransferase; | chromosome | CDS | 3506108 | 630 | - | 0.504762 |
fusA | SSO_3470 | GTP-binding protein chain elongation factor EF-G | RecName: Full=Elongation factor G; Short=EF-G; | chromosome | CDS | 3633399 | 2115 | - | 0.508747 |
glnS | SSO_0634 | glutamine tRNA synthetase | RecName: Full=Glutamine--tRNA ligase; EC=6.1.1.18; AltName: Full=Glutaminyl-tRNA synthetase; Short=GlnRS; | chromosome | CDS | 669030 | 1665 | + | 0.530931 |
gltX | SSO_2491 | glutamate tRNA synthetase, catalytic subunit | RecName: Full=Glutamate--tRNA ligase; EC=6.1.1.17; AltName: Full=Glutamyl-tRNA synthetase; Short=GluRS; | chromosome | CDS | 2631843 | 1416 | - | 0.526836 |
glyQ | SSO_3829 | glycine tRNA synthetase, alpha subunit | RecName: Full=Glycine--tRNA ligase alpha subunit; EC=6.1.1.14; AltName: Full=Glycyl-tRNA synthetase alpha subunit; Short=GlyRS; | chromosome | CDS | 4022085 | 912 | + | 0.558114 |
glyS | SSO_3830 | glycine tRNA synthetase, beta subunit | RecName: Full=Glycine--tRNA ligase beta subunit; EC=6.1.1.14; AltName: Full=Glycyl-tRNA synthetase beta subunit; Short=GlyRS; | chromosome | CDS | 4023006 | 2070 | + | 0.553623 |
gshB | SSO_3101 | glutathione synthetase | RecName: Full=Glutathione synthetase; EC=6.3.2.3; AltName: Full=GSH synthetase; AltName: Full=Glutathione synthase; | chromosome | CDS | 3263604 | 951 | + | 0.534175 |
hemK | SSO_1966 | possible protoporphyrinogen oxidase | RecName: Full=Release factor glutamine methyltransferase; Short=RF MTase; EC=2.1.1.297; AltName: Full=N5-glutamine methyltransferase PrmC; AltName: Full=Protein-(glutamine-N5) MTase PrmC; AltName: Full=Protein-glutamine N-methyltransferase PrmC; | chromosome | CDS | 2067829 | 834 | - | 0.547962 |
hisS | SSO_2596 | histidine tRNA synthetase | RecName: Full=Histidine--tRNA ligase; EC=6.1.1.21; AltName: Full=Histidyl-tRNA synthetase; Short=HisRS; | chromosome | CDS | 2742843 | 1275 | - | 0.545098 |
ileS | SSO_0031 | isoleucine tRNA synthetase | RecName: Full=Isoleucine--tRNA ligase; EC=6.1.1.5; AltName: Full=Isoleucyl-tRNA synthetase; Short=IleRS; | chromosome | CDS | 29557 | 2817 | + | 0.555556 |
infA | SSO_0885 | protein chain initiation factor IF-1 | RecName: Full=Translation initiation factor IF-1; | chromosome | CDS | 940044 | 219 | - | 0.484018 |
infB | SSO_3314 | protein chain initiation factor IF-2 | RecName: Full=Translation initiation factor IF-2; | chromosome | CDS | 3490280 | 2673 | - | 0.534605 |
infC | SSO_1440 | protein chain initiation factor IF-3 | RecName: Full=Translation initiation factor IF-3; | chromosome | CDS | 1516127 | 435 | + | 0.478161 |
iucB | SSO_3602 | siderophore biosynthesis protein | SubName: Full=Siderophore biosynthesis protein; | chromosome | CDS | 3769275 | 948 | + | 0.564346 |
ksgA | SSO_0059 | S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase | RecName: Full=Ribosomal RNA small subunit methyltransferase A; EC=2.1.1.182; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N, N-adenosyl(rRNA) dimethyltransferase; | chromosome | CDS | 60945 | 822 | - | 0.53163 |
lasT | SSO_4553 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4824555 | 687 | + | 0.502183 |
leuS | SSO_0596 | leucine tRNA synthetase | RecName: Full=Leucine--tRNA ligase; EC=6.1.1.4; AltName: Full=Leucyl-tRNA synthetase; Short=LeuRS; | chromosome | CDS | 633484 | 2583 | - | 0.532714 |
lysS | SSO_3043 | lysine tRNA synthetase, constitutive | RecName: Full=Lysine--tRNA ligase; EC=6.1.1.6; AltName: Full=Lysyl-tRNA synthetase; | chromosome | CDS | 3203463 | 1518 | - | 0.529644 |
lysU | SSO_4306 | lysine tRNA synthetase, inducible | RecName: Full=Lysine--tRNA ligase; EC=6.1.1.6; AltName: Full=Lysyl-tRNA synthetase; | chromosome | CDS | 4573626 | 1518 | - | 0.47365 |
map | SSO_0180 | methionine aminopeptidase | RecName: Full=Methionine aminopeptidase; Short=MAP; Short=MetAP; EC=3.4.11.18; AltName: Full=Peptidase M; | chromosome | CDS | 203633 | 795 | - | 0.509434 |
miaA | SSO_4356 | delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase | RecName: Full=tRNA dimethylallyltransferase; EC=2.5.1.75; AltName: Full=Dimethylallyl diphosphate:tRNA dimethylallyltransferase; Short=DMAPP:tRNA dimethylallyltransferase; Short=DMATase; AltName: Full=Isopentenyl-diphosphate:tRNA isopentenyltransferase; Short=IPP transferase; Short=IPPT; Short=IPTase; | chromosome | CDS | 4626100 | 951 | + | 0.535226 |
ospD1 | SSO_P022 | OspD1 | SubName: Full=OspD1; | pSS_046 | CDS | 16954 | 678 | + | 0.358407 |
pcnB | SSO_0155 | poly(A) polymerase I | RecName: Full=Poly(A) polymerase I; Short=PAP I; EC=2.7.7.19; | chromosome | CDS | 171926 | 1365 | - | 0.562637 |
pheS | SSO_1444 | phenylalanine tRNA synthetase, alpha-subunit | RecName: Full=Phenylalanine--tRNA ligase alpha subunit; EC=6.1.1.20; AltName: Full=Phenylalanyl-tRNA synthetase alpha subunit; Short=PheRS; | chromosome | CDS | 1517714 | 984 | + | 0.539634 |
pnp | SSO_3310 | polynucleotide phosphorylase | RecName: Full=Polyribonucleotide nucleotidyltransferase; EC=2.7.7.8; AltName: Full=Polynucleotide phosphorylase; Short=PNPase; | chromosome | CDS | 3485971 | 2205 | - | 0.533787 |
prfA | SSO_1967 | peptide chain release factor RF-1 | RecName: Full=Peptide chain release factor 1; Short=RF-1; | chromosome | CDS | 2068662 | 1083 | - | 0.528163 |
prfC | SSO_4525 | peptide chain release factor RF-3 | RecName: Full=Peptide chain release factor 3; Short=RF-3; | chromosome | CDS | 4794002 | 1590 | + | 0.536478 |
prfH | SSO_0278 | probable peptide chain release factor | SubName: Full=Probable peptide chain release factor; | chromosome | CDS | 306456 | 501 | + | 0.536926 |
prmA | SSO_3400 | methylase for 50S ribosomal subunit protein L11 | RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11 Mtase; EC=2.1.1.-; | chromosome | CDS | 3581857 | 882 | + | 0.543084 |
proS | SSO_0208 | proline tRNA synthetase | RecName: Full=Proline--tRNA ligase; EC=6.1.1.15; AltName: Full=Prolyl-tRNA synthetase; Short=ProRS; | chromosome | CDS | 233370 | 1719 | - | 0.544503 |
pth | SSO_1974 | peptidyl-tRNA hydrolase | RecName: Full=Peptidyl-tRNA hydrolase; Short=PTH; EC=3.1.1.29; | chromosome | CDS | 2076241 | 585 | + | 0.497436 |
queA | SSO_0382 | synthesis of queuine in tRNA; probably S-adenosylmethionine:tRNA ribosyltransferase-isomerase | RecName: Full=S-adenosylmethionine:tRNA ribosyltransferase-isomerase; EC=2.4.99.17; AltName: Full=Queuosine biosynthesis protein QueA; | chromosome | CDS | 410105 | 1071 | + | 0.54155 |
rbfA | SSO_3313 | ribosome-binding factor A | RecName: Full=Ribosome-binding factor A; | chromosome | CDS | 3489715 | 402 | - | 0.529851 |
rhlB | SSO_3951 | putative ATP-dependent RNA helicase | RecName: Full=ATP-dependent RNA helicase RhlB; EC=3.6.4.13; | chromosome | CDS | 4175055 | 1266 | - | 0.520537 |
rhlE | SSO_0776 | putative ATP-dependent RNA helicase | RecName: Full=ATP-dependent RNA helicase RhlE; EC=3.6.4.13; | chromosome | CDS | 819742 | 1365 | + | 0.5663 |
rimJ | SSO_1086 | acetylation of N-terminal alanine of 30S ribosomal subunit protein S5 | SubName: Full=Acetylation of N-terminal alanine of 30S ribosomal subunit protein S5; | chromosome | CDS | 1166867 | 585 | + | 0.494017 |
rimK | SSO_0837 | ribosomal protein S6 modification protein | RecName: Full=Ribosomal protein S6--L-glutamate ligase; EC=6.3.2.-; AltName: Full=Poly-alpha-glutamate synthase; AltName: Full=Ribosomal protein S6 modification protein; | chromosome | CDS | 888767 | 903 | + | 0.560354 |
rimL | SSO_1715 | acetylation of N-terminal serine of 30S ribosomal subunit protein L7; acetyl transferase | SubName: Full=Acetylation of N-terminal serine of 30S ribosomal subunit protein L7 acetyl transferase; | chromosome | CDS | 1818350 | 537 | - | 0.441341 |
rmf | SSO_0957 | ribosome modulation factor | RecName: Full=Ribosome modulation factor; Short=RMF; | chromosome | CDS | 1033808 | 168 | + | 0.541667 |
rna | SSO_0563 | RNase I | SubName: Full=RNase I; | chromosome | CDS | 603200 | 807 | - | 0.511772 |
rnd | SSO_1357 | RNase D | RecName: Full=Ribonuclease D; Short=RNase D; EC=3.1.13.5; | chromosome | CDS | 1432119 | 1128 | + | 0.539894 |
rne | SSO_1104 | RNase E | RecName: Full=Ribonuclease E; Short=RNase E; EC=3.1.26.12; | chromosome | CDS | 1182473 | 3186 | - | 0.556497 |
rnpA | SSO_3654 | RNase P, protein component | RecName: Full=Ribonuclease P protein component; Short=RNase P protein; Short=RNaseP protein; EC=3.1.26.5; AltName: Full=Protein C5; | chromosome | CDS | 3825404 | 360 | + | 0.558333 |
rph | SSO_3763 | RNase PH | RecName: Full=Ribonuclease PH; Short=RNase PH; EC=2.7.7.56; AltName: Full=tRNA nucleotidyltransferase; | chromosome | CDS | 3950555 | 717 | + | 0.566248 |
rplA | SSO_4157 | 50S ribosomal subunit protein L1 | RecName: Full=50S ribosomal protein L1; | chromosome | CDS | 4398010 | 705 | + | 0.51773 |
rplB | SSO_3458 | 50S ribosomal subunit protein L2 | RecName: Full=50S ribosomal protein L2; | chromosome | CDS | 3623341 | 822 | - | 0.526764 |
rplC | SSO_3461 | 50S ribosomal subunit protein L3 | RecName: Full=50S ribosomal protein L3; | chromosome | CDS | 3625095 | 630 | - | 0.515873 |
rplD | SSO_3460 | 50S ribosomal subunit protein L4 | RecName: Full=50S ribosomal protein L4; | chromosome | CDS | 3624479 | 606 | - | 0.529703 |
rplE | SSO_3449 | 50S ribosomal subunit protein L5 | RecName: Full=50S ribosomal protein L5; | chromosome | CDS | 3619699 | 540 | - | 0.496296 |
rplF | SSO_3446 | 50S ribosomal subunit protein L6 | RecName: Full=50S ribosomal protein L6; | chromosome | CDS | 3618407 | 534 | - | 0.518727 |
rplI | SSO_4386 | 50S ribosomal subunit protein L9 | RecName: Full=50S ribosomal protein L9; | chromosome | CDS | 4651991 | 450 | + | 0.5 |
rplJ | SSO_4158 | 50S ribosomal subunit protein L10 | RecName: Full=50S ribosomal protein L10; | chromosome | CDS | 4399127 | 498 | + | 0.522088 |
rplK | SSO_4156 | 50S ribosomal subunit protein L11 | RecName: Full=50S ribosomal protein L11; | chromosome | CDS | 4397578 | 429 | + | 0.519814 |
rplL | SSO_4159 | 50S ribosomal subunit protein L7/L12 | RecName: Full=50S ribosomal protein L7/L12; | chromosome | CDS | 4399691 | 366 | + | 0.461749 |
rplM | SSO_3372 | 50S ribosomal subunit protein L13 | RecName: Full=50S ribosomal protein L13; | chromosome | CDS | 3549916 | 429 | - | 0.501166 |
rplN | SSO_3451 | 50S ribosomal subunit protein L14 | RecName: Full=50S ribosomal protein L14; | chromosome | CDS | 3620578 | 372 | - | 0.510753 |
rplO | SSO_3442 | 50S ribosomal subunit protein L15 | RecName: Full=50S ribosomal protein L15; | chromosome | CDS | 3616905 | 435 | - | 0.537931 |
rplP | SSO_3454 | 50S ribosomal subunit protein L16 | RecName: Full=50S ribosomal protein L16; | chromosome | CDS | 3621557 | 411 | - | 0.518248 |
rplQ | SSO_3435 | 50S ribosomal subunit protein L17 | RecName: Full=50S ribosomal protein L17; | chromosome | CDS | 3612416 | 384 | - | 0.533854 |
rplR | SSO_3445 | 50S ribosomal subunit protein L18 | RecName: Full=50S ribosomal protein L18; | chromosome | CDS | 3618044 | 354 | - | 0.533898 |
rplS | SSO_2763 | 50S ribosomal subunit protein L19 | RecName: Full=50S ribosomal protein L19; | chromosome | CDS | 2916521 | 348 | - | 0.479885 |
rplT | SSO_1442 | 50S ribosomal subunit protein L20 | RecName: Full=50S ribosomal protein L20; | chromosome | CDS | 1516908 | 357 | + | 0.484594 |
rplU | SSO_3334 | 50S ribosomal subunit protein L21 | RecName: Full=50S ribosomal protein L21; | chromosome | CDS | 3512213 | 312 | - | 0.483974 |
rplV | SSO_3456 | 50S ribosomal subunit protein L22 | RecName: Full=50S ribosomal protein L22; | chromosome | CDS | 3622699 | 333 | - | 0.498498 |
rplW | SSO_3459 | 50S ribosomal subunit protein L23 | RecName: Full=50S ribosomal protein L23; | chromosome | CDS | 3624180 | 303 | - | 0.481848 |
rplX | SSO_3450 | 50S ribosomal subunit protein L24 | RecName: Full=50S ribosomal protein L24; | chromosome | CDS | 3620253 | 315 | - | 0.463492 |
rplY | SSO_2241 | 50S ribosomal subunit protein L25 | RecName: Full=50S ribosomal protein L25; | chromosome | CDS | 2355245 | 285 | + | 0.505263 |
rpmA | SSO_3333 | 50S ribosomal subunit protein L27 | RecName: Full=50S ribosomal protein L27; | chromosome | CDS | 3511935 | 258 | - | 0.5 |
rpmB | SSO_3770 | 50S ribosomal subunit protein L28 | RecName: Full=50S ribosomal protein L28; | chromosome | CDS | 3956208 | 237 | + | 0.527426 |
rpmC | SSO_3453 | 50S ribosomal subunit protein L29 | RecName: Full=50S ribosomal protein L29; | chromosome | CDS | 3621366 | 192 | - | 0.541667 |
rpmD | SSO_3443 | 50S ribosomal subunit protein L30 | RecName: Full=50S ribosomal protein L30; | chromosome | CDS | 3617343 | 180 | - | 0.5 |
rpmE | SSO_4105 | 50S ribosomal subunit protein L31 | RecName: Full=50S ribosomal protein L31; | chromosome | CDS | 4341053 | 213 | + | 0.492958 |
rpmF | SSO_1109 | 50S ribosomal subunit protein L32 | RecName: Full=50S ribosomal protein L32; | chromosome | CDS | 1188658 | 174 | + | 0.54023 |
rpmG | SSO_3771 | 50S ribosomal subunit protein L33 | RecName: Full=50S ribosomal protein L33; | chromosome | CDS | 3956465 | 168 | + | 0.404762 |
rpmH | SSO_3653 | 50S ribosomal subunit protein L34 | RecName: Full=50S ribosomal protein L34; | chromosome | CDS | 3825247 | 141 | + | 0.51773 |
rpmI | SSO_1441 | 50S ribosomal subunit protein A | RecName: Full=50S ribosomal protein L35; | chromosome | CDS | 1516658 | 198 | + | 0.5 |
rpmJ | SSO_3440 | 50S ribosomal subunit protein L36 | RecName: Full=50S ribosomal protein L36; | chromosome | CDS | 3615418 | 117 | - | 0.478632 |
rpsA | SSO_0913 | 30S ribosomal subunit protein S1 | RecName: Full=30S ribosomal protein S1; | chromosome | CDS | 977703 | 1674 | + | 0.509558 |
rpsB | SSO_0181 | 30S ribosomal subunit protein S2 | RecName: Full=30S ribosomal protein S2; | chromosome | CDS | 204795 | 726 | + | 0.512397 |
rpsC | SSO_3455 | 30S ribosomal subunit protein S3 | RecName: Full=30S ribosomal protein S3; | chromosome | CDS | 3621980 | 702 | - | 0.507123 |
rpsD | SSO_3437 | 30S ribosomal subunit protein S4 | RecName: Full=30S ribosomal protein S4; | chromosome | CDS | 3613855 | 621 | - | 0.507246 |
rpsE | SSO_3444 | 30S ribosomal subunit protein S5 | RecName: Full=30S ribosomal protein S5; | chromosome | CDS | 3617526 | 504 | - | 0.5 |
rpsF | SSO_4383 | 30S ribosomal subunit protein S6 | RecName: Full=30S ribosomal protein S6; | chromosome | CDS | 4651001 | 396 | + | 0.527778 |
rpsG | SSO_3471 | 30S ribosomal subunit protein S7 | RecName: Full=30S ribosomal protein S7; | chromosome | CDS | 3635610 | 471 | - | 0.494692 |
rpsH | SSO_3447 | 30S ribosomal subunit protein S8 | RecName: Full=30S ribosomal protein S8; | chromosome | CDS | 3618953 | 393 | - | 0.501272 |
rpsI | SSO_3371 | 30S ribosomal subunit protein S9 | RecName: Full=30S ribosomal protein S9; | chromosome | CDS | 3549508 | 393 | - | 0.521628 |
rpsJ | SSO_3462 | 30S ribosomal subunit protein S10 | RecName: Full=30S ribosomal protein S10; | chromosome | CDS | 3625757 | 312 | - | 0.554487 |
rpsK | SSO_3438 | 30S ribosomal subunit protein S11 | RecName: Full=30S ribosomal protein S11; | chromosome | CDS | 3614509 | 390 | - | 0.515385 |
rpsL | SSO_3472 | 30S ribosomal subunit protein S12 | RecName: Full=30S ribosomal protein S12; | chromosome | CDS | 3636177 | 375 | - | 0.533333 |
rpsM | SSO_3439 | 30S ribosomal subunit protein S13 | RecName: Full=30S ribosomal protein S13; | chromosome | CDS | 3614915 | 357 | - | 0.518207 |
rpsN | SSO_3448 | 30S ribosomal subunit protein S14 | RecName: Full=30S ribosomal protein S14; | chromosome | CDS | 3619379 | 306 | - | 0.529412 |
rpsO | SSO_3311 | 30S ribosomal subunit protein S15 | RecName: Full=30S ribosomal protein S15; | chromosome | CDS | 3488353 | 270 | - | 0.518519 |
rpsP | SSO_2766 | 30S ribosomal subunit protein S16 | RecName: Full=30S ribosomal protein S16; | chromosome | CDS | 2918275 | 249 | - | 0.514056 |
rpsQ | SSO_3452 | 30S ribosomal subunit protein S17 | RecName: Full=30S ribosomal protein S17; | chromosome | CDS | 3621112 | 255 | - | 0.47451 |
rpsR | SSO_4385 | 30S ribosomal subunit protein S18 | RecName: Full=30S ribosomal protein S18; | chromosome | CDS | 4651722 | 228 | + | 0.526316 |
rpsS | SSO_3457 | 30S ribosomal subunit protein S19 | RecName: Full=30S ribosomal protein S19; | chromosome | CDS | 3623046 | 279 | - | 0.494624 |
rpsT | SSO_0028 | 30S ribosomal subunit protein S20 | RecName: Full=30S ribosomal protein S20; | chromosome | CDS | 27981 | 264 | - | 0.465909 |
rpsU | SSO_3202 | 30S ribosomal subunit protein S21 | RecName: Full=30S ribosomal protein S21; | chromosome | CDS | 3365012 | 216 | + | 0.518519 |
rsuA | SSO_2239 | 16S pseudouridylate 516 synthase | RecName: Full=Pseudouridine synthase; EC=5.4.99.-; | chromosome | CDS | 2352515 | 696 | - | 0.530172 |
selB | SSO_3818 | selenocysteinyl-tRNA-specific translation factor | SubName: Full=Selenocysteinyl-tRNA-specific translation factor; | chromosome | CDS | 4011373 | 1845 | + | 0.566396 |
serS | SSO_0894 | serine tRNA synthetase | RecName: Full=Serine--tRNA ligase; EC=6.1.1.11; AltName: Full=Seryl-tRNA synthetase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec) synthetase; | chromosome | CDS | 953321 | 1293 | + | 0.528229 |
sfhB | SSO_2720 | suppressor of ftsH mutation | RecName: Full=Pseudouridine synthase; EC=5.4.99.-; | chromosome | CDS | 2881287 | 981 | - | 0.529052 |
shiE | SSO_3599 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3765345 | 504 | + | 0.361111 |
smpA | SSO_2773 | small membrane protein A | RecName: Full=Outer membrane protein assembly factor BamE; | chromosome | CDS | 2925985 | 300 | + | 0.496667 |
spoU | SSO_3754 | putative RNA methylase | SubName: Full=Putative RNA methylase; | chromosome | CDS | 3941897 | 690 | - | 0.552174 |
srmB | SSO_2702 | ATP-dependent RNA helicase | RecName: Full=ATP-dependent RNA helicase SrmB; EC=3.6.4.13; | chromosome | CDS | 2859229 | 1335 | + | 0.549064 |
sun | SSO_3429 | conserved hypothetical protein | RecName: Full=Ribosomal RNA small subunit methyltransferase B; EC=2.1.1.176; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase RsmB; | chromosome | CDS | 3608007 | 1290 | + | 0.5 |
tgt | SSO_0383 | tRNA-guanine transglycosylase | RecName: Full=Queuine tRNA-ribosyltransferase; EC=2.4.2.29; AltName: Full=Guanine insertion enzyme; AltName: Full=tRNA-guanine transglycosylase; | chromosome | CDS | 411231 | 1128 | + | 0.511525 |
thrS | SSO_1439 | threonine tRNA synthetase | RecName: Full=Threonine--tRNA ligase; EC=6.1.1.3; AltName: Full=Threonyl-tRNA synthetase; Short=ThrRS; | chromosome | CDS | 1514087 | 1929 | + | 0.497667 |
trmA | SSO_4138 | tRNA (uracil-5-)-methyltransferase | RecName: Full=tRNA/tmRNA (uracil-C(5))-methyltransferase; EC=2.1.1.-; EC=2.1.1.35; AltName: Full=tRNA (uracil(54)-C(5))-methyltransferase; AltName: Full=tRNA(m5U54)-methyltransferase; Short=RUMT; AltName: Full=tmRNA (uracil(341)-C(5))-methyltransferase; | chromosome | CDS | 4381555 | 1101 | - | 0.509537 |
trmD | SSO_2764 | tRNA methyltransferase; tRNA (guanine-7-)-methyltransferase | RecName: Full=tRNA (guanine-N(1)-)-methyltransferase; EC=2.1.1.228; AltName: Full=M1G-methyltransferase; AltName: Full=tRNA [GM37] methyltransferase; | chromosome | CDS | 2916910 | 768 | - | 0.532552 |
trpS | SSO_3515 | tryptophan tRNA synthetase | RecName: Full=Tryptophan--tRNA ligase; EC=6.1.1.2; AltName: Full=Tryptophanyl-tRNA synthetase; | chromosome | CDS | 3675281 | 1005 | - | 0.519403 |
truA | SSO_2376 | pseudouridylate synthase I | RecName: Full=tRNA pseudouridine synthase A; EC=5.4.99.12; AltName: Full=tRNA pseudouridine(38-40) synthase; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I; | chromosome | CDS | 2506592 | 813 | - | 0.554736 |
truB | SSO_3312 | tRNA pseudouridine 5S synthase | RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.25; AltName: Full=tRNA pseudouridine(55) synthase; Short=Psi55 synthase; AltName: Full=tRNA pseudouridylate synthase; AltName: Full=tRNA-uridine isomerase; | chromosome | CDS | 3488771 | 945 | - | 0.52381 |
tsf | SSO_0182 | protein chain elongation factor EF-Ts | RecName: Full=Elongation factor Ts; Short=EF-Ts; | chromosome | CDS | 205778 | 852 | + | 0.5 |
tufA | SSO_3469 | protein chain elongation factor EF-Tu | RecName: Full=Elongation factor Tu 1; Short=EF-Tu 1; | chromosome | CDS | 3632144 | 1185 | - | 0.531646 |
tufB | SSO_4153 | protein chain elongation factor EF-Tu | RecName: Full=Elongation factor Tu 2; Short=EF-Tu 2; | chromosome | CDS | 4395075 | 1185 | + | 0.531646 |
tyrS | SSO_1519 | tyrosine tRNA synthetase | RecName: Full=Tyrosine--tRNA ligase; EC=6.1.1.1; AltName: Full=Tyrosyl-tRNA synthetase; Short=TyrRS; | chromosome | CDS | 1594692 | 1275 | + | 0.520784 |
valS | SSO_4443 | valine tRNA synthetase | RecName: Full=Valine--tRNA ligase; EC=6.1.1.9; AltName: Full=Valyl-tRNA synthetase; Short=ValRS; | chromosome | CDS | 4711534 | 2856 | - | 0.55112 |
yabO | SSO_0064 | conserved hypothetical protein | RecName: Full=Pseudouridine synthase; EC=5.4.99.-; | chromosome | CDS | 67632 | 660 | - | 0.543939 |
yadB | SSO_0156 | putative tRNA synthetase | RecName: Full=Glutamyl-Q tRNA(Asp) synthetase; Short=Glu-Q-RSs; EC=6.1.1.-; | chromosome | CDS | 173383 | 927 | - | 0.530744 |
yadP | SSO_0159 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 175698 | 540 | - | 0.561111 |
ybjF | SSO_0844 | putative enzyme | RecName: Full=23S rRNA (uracil(747)-C(5))-methyltransferase RlmC; EC=2.1.1.189; AltName: Full=23S rRNA(m5U747)-methyltransferase; | chromosome | CDS | 895318 | 1128 | + | 0.545213 |
yceC | SSO_1106 | conserved hypothetical protein | RecName: Full=Pseudouridine synthase; EC=5.4.99.-; | chromosome | CDS | 1186231 | 960 | + | 0.515625 |
ycfB | SSO_1151 | conserved hypothetical protein | RecName: Full=tRNA-specific 2-thiouridylase MnmA; EC=2.8.1.-; | chromosome | CDS | 1232690 | 1152 | - | 0.532118 |
ychF | SSO_1975 | putative GTP-binding protein | RecName: Full=Ribosome-binding ATPase YchF; | chromosome | CDS | 2076942 | 1092 | + | 0.509158 |
yciH | SSO_1858 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1956552 | 330 | - | 0.49697 |
yciL | SSO_1874 | conserved hypothetical protein | RecName: Full=Pseudouridine synthase; EC=5.4.99.-; | chromosome | CDS | 1972585 | 873 | - | 0.544101 |
yciO | SSO_1876 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1974812 | 657 | - | 0.488584 |
yeiP | SSO_2227 | putative elongation factor | RecName: Full=Elongation factor P-like protein; | chromosome | CDS | 2337992 | 828 | + | 0.506039 |
yfcB | SSO_2389 | putative adenine-specific methylase | RecName: Full=50S ribosomal protein L3 glutamine methyltransferase; Short=L3 MTase; EC=2.1.1.298; AltName: Full=N5-glutamine methyltransferase PrmB; | chromosome | CDS | 2519286 | 1266 | - | 0.515008 |
yfhC | SSO_2642 | putative deaminase | RecName: Full=tRNA-specific adenosine deaminase; EC=3.5.4.33; | chromosome | CDS | 2801328 | 537 | - | 0.543762 |
yfiA | SSO_2748 | putative yhbH sigma 54 modulator | SubName: Full=Putative yhbH sigma 54 modulator; | chromosome | CDS | 2905058 | 342 | + | 0.459064 |
yfiF | SSO_2707 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2863824 | 1038 | - | 0.564547 |
yfjA | SSO_2765 | conserved hypothetical protein | RecName: Full=Ribosome maturation factor RimM; | chromosome | CDS | 2917708 | 558 | - | 0.491039 |
ygcA | SSO_2942 | putative enzyme | RecName: Full=23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD; EC=2.1.1.190; AltName: Full=23S rRNA(m5U1939)-methyltransferase; | chromosome | CDS | 3083426 | 1302 | - | 0.512289 |
ygjO | SSO_3121 | putative enzyme | RecName: Full=Ribosomal RNA large subunit methyltransferase G; EC=2.1.1.174; AltName: Full=23S rRNA m2G1835 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase RlmG; | chromosome | CDS | 3279227 | 1137 | + | 0.538259 |
yhaR | SSO_3270 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3444426 | 453 | - | 0.520971 |
yhbH | SSO_3351 | probable sigma-54 modulation protein | SubName: Full=Probable sigma-54 modulation protein; | chromosome | CDS | 3525247 | 288 | + | 0.447917 |
yhbY | SSO_3328 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3506863 | 294 | + | 0.486395 |
yhdG | SSO_3401 | putative dehydrogenase | RecName: Full=tRNA-dihydrouridine synthase; EC=1.-.-.-; | chromosome | CDS | 3583067 | 966 | + | 0.522774 |
yibK | SSO_3799 | conserved hypothetical protein | RecName: Full=tRNA (cytidine(34)-2-O)-methyltransferase; EC=2.1.1.207; AltName: Full=tRNA (cytidine/uridine-2-O-)-methyltransferase TrmL; | chromosome | CDS | 3983775 | 474 | - | 0.550633 |
yicN | SSO_3616 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3784568 | 480 | - | 0.520833 |
yihZ | SSO_4056 | conserved hypothetical protein | RecName: Full=D-tyrosyl-tRNA(Tyr) deacylase; EC=3.1.-.-; | chromosome | CDS | 4290162 | 438 | + | 0.552511 |
yjbC | SSO_4200 | conserved hypothetical protein | RecName: Full=Pseudouridine synthase; EC=5.4.99.-; | chromosome | CDS | 4451945 | 873 | + | 0.5189 |
yjbN | SSO_4229 | conserved hypothetical protein | RecName: Full=tRNA-dihydrouridine synthase; EC=1.-.-.-; | chromosome | CDS | 4486092 | 1038 | + | 0.534682 |
yjeA | SSO_4341 | putative lysyl-tRNA synthetase | RecName: Full=Elongation factor P--(R)-beta-lysine ligase; Short=EF-P--(R)-beta-lysine ligase; EC=6.3.1.-; AltName: Full=EF-P post-translational modification enzyme A; AltName: Full=EF-P-lysine lysyltransferase; | chromosome | CDS | 4609118 | 1008 | + | 0.518849 |
yjeJ | SSO_4328 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4599099 | 768 | - | 0.459635 |
yjfH | SSO_4365 | conserved hypothetical protein | RecName: Full=23S rRNA (guanosine-2-O-)-methyltransferase RlmB; EC=2.1.1.185; AltName: Full=23S rRNA (guanosine2251 2-O)-methyltransferase; AltName: Full=23S rRNA Gm2251 2-O-methyltransferase; | chromosome | CDS | 4636124 | 732 | + | 0.557377 |
yjgF | SSO_4424 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4696980 | 426 | - | 0.514085 |
yjgH | SSO_4428 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4699267 | 396 | - | 0.469697 |
yjjT | SSO_4521 | putative enzyme | RecName: Full=Ribosomal RNA small subunit methyltransferase C; EC=2.1.1.172; AltName: Full=16S rRNA m2G1207 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase RsmC; | chromosome | CDS | 4791257 | 1032 | - | 0.553295 |
yleA | SSO_0615 | conserved hypothetical protein | RecName: Full=tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; EC=2.8.4.3; AltName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase; | chromosome | CDS | 655636 | 1425 | - | 0.540351 |
yliG | SSO_0818 | conserved hypothetical protein | RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; EC=2.-.-.-; AltName: Full=Ribosome maturation factor RimO; | chromosome | CDS | 872248 | 1326 | - | 0.527149 |
ymfC | SSO_1153 | conserved hypothetical protein | RecName: Full=Pseudouridine synthase; EC=5.4.99.-; | chromosome | CDS | 1234321 | 624 | - | 0.517628 |
ymjA | SSO_1845 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1941865 | 246 | + | 0.48374 |
yohI | SSO_2196 | putative regulator protein | RecName: Full=tRNA-dihydrouridine synthase; EC=1.-.-.-; | chromosome | CDS | 2302372 | 948 | - | 0.53903 |
yqcB | SSO_2948 | conserved hypothetical protein | RecName: Full=Pseudouridine synthase; EC=5.4.99.-; | chromosome | CDS | 3092729 | 783 | - | 0.537676 |
yrdC | SSO_3423 | conserved hypothetical protein | RecName: Full=Threonylcarbamoyl-AMP synthase; Short=TC-AMP synthase; EC=2.7.7.87; AltName: Full=L-threonylcarbamoyladenylate synthase; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaC; AltName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein TsaC; | chromosome | CDS | 3603643 | 573 | - | 0.527051 |
yrfH | SSO_3531 | conserved hypothetical protein | RecName: Full=Heat shock protein 15; | chromosome | CDS | 3691994 | 402 | + | 0.532338 |