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2024-05-02 19:47:10

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Shigella sonnei Ss046, Ss046

Number of genes found: 180

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Shigella sonnei Ss046, Ss046
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SSO_1271 hypothetical bacteriophage proteinchromosome CDS1345257 624 + 0.525641
NA SSO_1352 conserved hypothetical proteinchromosome CDS1426399 393 - 0.503817
NA SSO_P208 conserved hypothetical proteinpSS_046 CDS182829 288 + 0.395833
NA SSO_2316 putative transformylasechromosome CDS2443874 1983 + 0.512355
NA SSO_2614 putative ATP synthase beta subunitchromosome CDS2765778 738 - 0.547425
alaS SSO_2841 alanyl-tRNA synthetasechromosome CDS2980471 2631 - 0.536678
ansA SSO_1388 cytoplasmic L-asparaginase Ichromosome CDS1461663 1017 - 0.511308
ansB SSO_3239 periplasmic L-asparaginase IIchromosome CDS3414394 1047 + 0.527221
argS SSO_1242 arginine tRNA synthetasechromosome CDS1316621 1737 - 0.528497
asnS SSO_0933 asparagine tRNA synthetasechromosome CDS1004729 1401 - 0.528908
aspS SSO_1275 aspartate tRNA synthetasechromosome CDS1349891 1773 + 0.537507
cafA SSO_3388 bundles of cytoplasmic filamentschromosome CDS3569113 1488 - 0.521505
cca SSO_3193 tRNA nucleotidyl transferasechromosome CDS3356139 1239 + 0.560129
cysS SSO_0492 cysteine tRNA synthetasechromosome CDS521289 1386 - 0.541126
dbpA SSO_1788 ATP-dependent RNA helicasechromosome CDS1884246 1374 - 0.515284
deaD SSO_3308 inducible ATP-independent RNA helicasechromosome CDS3482909 1941 - 0.552808
def SSO_3427 peptide deformylasechromosome CDS3606490 510 + 0.466667
efp SSO_4331 elongation factor Pchromosome CDS4602205 567 + 0.499118
fmt SSO_3428 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferasechromosome CDS3607014 948 + 0.531646
frr SSO_0184 ribosome releasing factorchromosome CDS207793 558 + 0.508961
ftsJ SSO_3327 cell division proteinchromosome CDS3506108 630 - 0.504762
fusA SSO_3470 GTP-binding protein chain elongation factor EF-Gchromosome CDS3633399 2115 - 0.508747
glnS SSO_0634 glutamine tRNA synthetasechromosome CDS669030 1665 + 0.530931
gltX SSO_2491 glutamate tRNA synthetase, catalytic subunitchromosome CDS2631843 1416 - 0.526836
glyQ SSO_3829 glycine tRNA synthetase, alpha subunitchromosome CDS4022085 912 + 0.558114
glyS SSO_3830 glycine tRNA synthetase, beta subunitchromosome CDS4023006 2070 + 0.553623
gshB SSO_3101 glutathione synthetasechromosome CDS3263604 951 + 0.534175
hemK SSO_1966 possible protoporphyrinogen oxidasechromosome CDS2067829 834 - 0.547962
hisS SSO_2596 histidine tRNA synthetasechromosome CDS2742843 1275 - 0.545098
ileS SSO_0031 isoleucine tRNA synthetasechromosome CDS29557 2817 + 0.555556
infA SSO_0885 protein chain initiation factor IF-1chromosome CDS940044 219 - 0.484018
infB SSO_3314 protein chain initiation factor IF-2chromosome CDS3490280 2673 - 0.534605
infC SSO_1440 protein chain initiation factor IF-3chromosome CDS1516127 435 + 0.478161
iucB SSO_3602 siderophore biosynthesis proteinchromosome CDS3769275 948 + 0.564346
ksgA SSO_0059 S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferasechromosome CDS60945 822 - 0.53163
lasT SSO_4553 conserved hypothetical proteinchromosome CDS4824555 687 + 0.502183
leuS SSO_0596 leucine tRNA synthetasechromosome CDS633484 2583 - 0.532714
lysS SSO_3043 lysine tRNA synthetase, constitutivechromosome CDS3203463 1518 - 0.529644
lysU SSO_4306 lysine tRNA synthetase, induciblechromosome CDS4573626 1518 - 0.47365
map SSO_0180 methionine aminopeptidasechromosome CDS203633 795 - 0.509434
miaA SSO_4356 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferasechromosome CDS4626100 951 + 0.535226
ospD1 SSO_P022 OspD1pSS_046 CDS16954 678 + 0.358407
pcnB SSO_0155 poly(A) polymerase Ichromosome CDS171926 1365 - 0.562637
pheS SSO_1444 phenylalanine tRNA synthetase, alpha-subunitchromosome CDS1517714 984 + 0.539634
pnp SSO_3310 polynucleotide phosphorylasechromosome CDS3485971 2205 - 0.533787
prfA SSO_1967 peptide chain release factor RF-1chromosome CDS2068662 1083 - 0.528163
prfC SSO_4525 peptide chain release factor RF-3chromosome CDS4794002 1590 + 0.536478
prfH SSO_0278 probable peptide chain release factorchromosome CDS306456 501 + 0.536926
prmA SSO_3400 methylase for 50S ribosomal subunit protein L11chromosome CDS3581857 882 + 0.543084
proS SSO_0208 proline tRNA synthetasechromosome CDS233370 1719 - 0.544503
pth SSO_1974 peptidyl-tRNA hydrolasechromosome CDS2076241 585 + 0.497436
queA SSO_0382 synthesis of queuine in tRNA; probably S-adenosylmethionine:tRNA ribosyltransferase-isomerasechromosome CDS410105 1071 + 0.54155
rbfA SSO_3313 ribosome-binding factor Achromosome CDS3489715 402 - 0.529851
rhlB SSO_3951 putative ATP-dependent RNA helicasechromosome CDS4175055 1266 - 0.520537
rhlE SSO_0776 putative ATP-dependent RNA helicasechromosome CDS819742 1365 + 0.5663
rimJ SSO_1086 acetylation of N-terminal alanine of 30S ribosomal subunit protein S5chromosome CDS1166867 585 + 0.494017
rimK SSO_0837 ribosomal protein S6 modification proteinchromosome CDS888767 903 + 0.560354
rimL SSO_1715 acetylation of N-terminal serine of 30S ribosomal subunit protein L7; acetyl transferasechromosome CDS1818350 537 - 0.441341
rmf SSO_0957 ribosome modulation factorchromosome CDS1033808 168 + 0.541667
rna SSO_0563 RNase Ichromosome CDS603200 807 - 0.511772
rnd SSO_1357 RNase Dchromosome CDS1432119 1128 + 0.539894
rne SSO_1104 RNase Echromosome CDS1182473 3186 - 0.556497
rnpA SSO_3654 RNase P, protein componentchromosome CDS3825404 360 + 0.558333
rph SSO_3763 RNase PHchromosome CDS3950555 717 + 0.566248
rplA SSO_4157 50S ribosomal subunit protein L1chromosome CDS4398010 705 + 0.51773
rplB SSO_3458 50S ribosomal subunit protein L2chromosome CDS3623341 822 - 0.526764
rplC SSO_3461 50S ribosomal subunit protein L3chromosome CDS3625095 630 - 0.515873
rplD SSO_3460 50S ribosomal subunit protein L4chromosome CDS3624479 606 - 0.529703
rplE SSO_3449 50S ribosomal subunit protein L5chromosome CDS3619699 540 - 0.496296
rplF SSO_3446 50S ribosomal subunit protein L6chromosome CDS3618407 534 - 0.518727
rplI SSO_4386 50S ribosomal subunit protein L9chromosome CDS4651991 450 + 0.5
rplJ SSO_4158 50S ribosomal subunit protein L10chromosome CDS4399127 498 + 0.522088
rplK SSO_4156 50S ribosomal subunit protein L11chromosome CDS4397578 429 + 0.519814
rplL SSO_4159 50S ribosomal subunit protein L7/L12chromosome CDS4399691 366 + 0.461749
rplM SSO_3372 50S ribosomal subunit protein L13chromosome CDS3549916 429 - 0.501166
rplN SSO_3451 50S ribosomal subunit protein L14chromosome CDS3620578 372 - 0.510753
rplO SSO_3442 50S ribosomal subunit protein L15chromosome CDS3616905 435 - 0.537931
rplP SSO_3454 50S ribosomal subunit protein L16chromosome CDS3621557 411 - 0.518248
rplQ SSO_3435 50S ribosomal subunit protein L17chromosome CDS3612416 384 - 0.533854
rplR SSO_3445 50S ribosomal subunit protein L18chromosome CDS3618044 354 - 0.533898
rplS SSO_2763 50S ribosomal subunit protein L19chromosome CDS2916521 348 - 0.479885
rplT SSO_1442 50S ribosomal subunit protein L20chromosome CDS1516908 357 + 0.484594
rplU SSO_3334 50S ribosomal subunit protein L21chromosome CDS3512213 312 - 0.483974
rplV SSO_3456 50S ribosomal subunit protein L22chromosome CDS3622699 333 - 0.498498
rplW SSO_3459 50S ribosomal subunit protein L23chromosome CDS3624180 303 - 0.481848
rplX SSO_3450 50S ribosomal subunit protein L24chromosome CDS3620253 315 - 0.463492
rplY SSO_2241 50S ribosomal subunit protein L25chromosome CDS2355245 285 + 0.505263
rpmA SSO_3333 50S ribosomal subunit protein L27chromosome CDS3511935 258 - 0.5
rpmB SSO_3770 50S ribosomal subunit protein L28chromosome CDS3956208 237 + 0.527426
rpmC SSO_3453 50S ribosomal subunit protein L29chromosome CDS3621366 192 - 0.541667
rpmD SSO_3443 50S ribosomal subunit protein L30chromosome CDS3617343 180 - 0.5
rpmE SSO_4105 50S ribosomal subunit protein L31chromosome CDS4341053 213 + 0.492958
rpmF SSO_1109 50S ribosomal subunit protein L32chromosome CDS1188658 174 + 0.54023
rpmG SSO_3771 50S ribosomal subunit protein L33chromosome CDS3956465 168 + 0.404762
rpmH SSO_3653 50S ribosomal subunit protein L34chromosome CDS3825247 141 + 0.51773
rpmI SSO_1441 50S ribosomal subunit protein Achromosome CDS1516658 198 + 0.5
rpmJ SSO_3440 50S ribosomal subunit protein L36chromosome CDS3615418 117 - 0.478632
rpsA SSO_0913 30S ribosomal subunit protein S1chromosome CDS977703 1674 + 0.509558
rpsB SSO_0181 30S ribosomal subunit protein S2chromosome CDS204795 726 + 0.512397
rpsC SSO_3455 30S ribosomal subunit protein S3chromosome CDS3621980 702 - 0.507123
rpsD SSO_3437 30S ribosomal subunit protein S4chromosome CDS3613855 621 - 0.507246
rpsE SSO_3444 30S ribosomal subunit protein S5chromosome CDS3617526 504 - 0.5
rpsF SSO_4383 30S ribosomal subunit protein S6chromosome CDS4651001 396 + 0.527778
rpsG SSO_3471 30S ribosomal subunit protein S7chromosome CDS3635610 471 - 0.494692
rpsH SSO_3447 30S ribosomal subunit protein S8chromosome CDS3618953 393 - 0.501272
rpsI SSO_3371 30S ribosomal subunit protein S9chromosome CDS3549508 393 - 0.521628
rpsJ SSO_3462 30S ribosomal subunit protein S10chromosome CDS3625757 312 - 0.554487
rpsK SSO_3438 30S ribosomal subunit protein S11chromosome CDS3614509 390 - 0.515385
rpsL SSO_3472 30S ribosomal subunit protein S12chromosome CDS3636177 375 - 0.533333
rpsM SSO_3439 30S ribosomal subunit protein S13chromosome CDS3614915 357 - 0.518207
rpsN SSO_3448 30S ribosomal subunit protein S14chromosome CDS3619379 306 - 0.529412
rpsO SSO_3311 30S ribosomal subunit protein S15chromosome CDS3488353 270 - 0.518519
rpsP SSO_2766 30S ribosomal subunit protein S16chromosome CDS2918275 249 - 0.514056
rpsQ SSO_3452 30S ribosomal subunit protein S17chromosome CDS3621112 255 - 0.47451
rpsR SSO_4385 30S ribosomal subunit protein S18chromosome CDS4651722 228 + 0.526316
rpsS SSO_3457 30S ribosomal subunit protein S19chromosome CDS3623046 279 - 0.494624
rpsT SSO_0028 30S ribosomal subunit protein S20chromosome CDS27981 264 - 0.465909
rpsU SSO_3202 30S ribosomal subunit protein S21chromosome CDS3365012 216 + 0.518519
rsuA SSO_2239 16S pseudouridylate 516 synthasechromosome CDS2352515 696 - 0.530172
selB SSO_3818 selenocysteinyl-tRNA-specific translation factorchromosome CDS4011373 1845 + 0.566396
serS SSO_0894 serine tRNA synthetasechromosome CDS953321 1293 + 0.528229
sfhB SSO_2720 suppressor of ftsH mutationchromosome CDS2881287 981 - 0.529052
shiE SSO_3599 conserved hypothetical proteinchromosome CDS3765345 504 + 0.361111
smpA SSO_2773 small membrane protein Achromosome CDS2925985 300 + 0.496667
spoU SSO_3754 putative RNA methylasechromosome CDS3941897 690 - 0.552174
srmB SSO_2702 ATP-dependent RNA helicasechromosome CDS2859229 1335 + 0.549064
sun SSO_3429 conserved hypothetical proteinchromosome CDS3608007 1290 + 0.5
tgt SSO_0383 tRNA-guanine transglycosylasechromosome CDS411231 1128 + 0.511525
thrS SSO_1439 threonine tRNA synthetasechromosome CDS1514087 1929 + 0.497667
trmA SSO_4138 tRNA (uracil-5-)-methyltransferasechromosome CDS4381555 1101 - 0.509537
trmD SSO_2764 tRNA methyltransferase; tRNA (guanine-7-)-methyltransferasechromosome CDS2916910 768 - 0.532552
trpS SSO_3515 tryptophan tRNA synthetasechromosome CDS3675281 1005 - 0.519403
truA SSO_2376 pseudouridylate synthase Ichromosome CDS2506592 813 - 0.554736
truB SSO_3312 tRNA pseudouridine 5S synthasechromosome CDS3488771 945 - 0.52381
tsf SSO_0182 protein chain elongation factor EF-Tschromosome CDS205778 852 + 0.5
tufA SSO_3469 protein chain elongation factor EF-Tuchromosome CDS3632144 1185 - 0.531646
tufB SSO_4153 protein chain elongation factor EF-Tuchromosome CDS4395075 1185 + 0.531646
tyrS SSO_1519 tyrosine tRNA synthetasechromosome CDS1594692 1275 + 0.520784
valS SSO_4443 valine tRNA synthetasechromosome CDS4711534 2856 - 0.55112
yabO SSO_0064 conserved hypothetical proteinchromosome CDS67632 660 - 0.543939
yadB SSO_0156 putative tRNA synthetasechromosome CDS173383 927 - 0.530744
yadP SSO_0159 conserved hypothetical proteinchromosome CDS175698 540 - 0.561111
ybjF SSO_0844 putative enzymechromosome CDS895318 1128 + 0.545213
yceC SSO_1106 conserved hypothetical proteinchromosome CDS1186231 960 + 0.515625
ycfB SSO_1151 conserved hypothetical proteinchromosome CDS1232690 1152 - 0.532118
ychF SSO_1975 putative GTP-binding proteinchromosome CDS2076942 1092 + 0.509158
yciH SSO_1858 conserved hypothetical proteinchromosome CDS1956552 330 - 0.49697
yciL SSO_1874 conserved hypothetical proteinchromosome CDS1972585 873 - 0.544101
yciO SSO_1876 conserved hypothetical proteinchromosome CDS1974812 657 - 0.488584
yeiP SSO_2227 putative elongation factorchromosome CDS2337992 828 + 0.506039
yfcB SSO_2389 putative adenine-specific methylasechromosome CDS2519286 1266 - 0.515008
yfhC SSO_2642 putative deaminasechromosome CDS2801328 537 - 0.543762
yfiA SSO_2748 putative yhbH sigma 54 modulatorchromosome CDS2905058 342 + 0.459064
yfiF SSO_2707 conserved hypothetical proteinchromosome CDS2863824 1038 - 0.564547
yfjA SSO_2765 conserved hypothetical proteinchromosome CDS2917708 558 - 0.491039
ygcA SSO_2942 putative enzymechromosome CDS3083426 1302 - 0.512289
ygjO SSO_3121 putative enzymechromosome CDS3279227 1137 + 0.538259
yhaR SSO_3270 conserved hypothetical proteinchromosome CDS3444426 453 - 0.520971
yhbH SSO_3351 probable sigma-54 modulation proteinchromosome CDS3525247 288 + 0.447917
yhbY SSO_3328 conserved hypothetical proteinchromosome CDS3506863 294 + 0.486395
yhdG SSO_3401 putative dehydrogenasechromosome CDS3583067 966 + 0.522774
yibK SSO_3799 conserved hypothetical proteinchromosome CDS3983775 474 - 0.550633
yicN SSO_3616 conserved hypothetical proteinchromosome CDS3784568 480 - 0.520833
yihZ SSO_4056 conserved hypothetical proteinchromosome CDS4290162 438 + 0.552511
yjbC SSO_4200 conserved hypothetical proteinchromosome CDS4451945 873 + 0.5189
yjbN SSO_4229 conserved hypothetical proteinchromosome CDS4486092 1038 + 0.534682
yjeA SSO_4341 putative lysyl-tRNA synthetasechromosome CDS4609118 1008 + 0.518849
yjeJ SSO_4328 conserved hypothetical proteinchromosome CDS4599099 768 - 0.459635
yjfH SSO_4365 conserved hypothetical proteinchromosome CDS4636124 732 + 0.557377
yjgF SSO_4424 conserved hypothetical proteinchromosome CDS4696980 426 - 0.514085
yjgH SSO_4428 conserved hypothetical proteinchromosome CDS4699267 396 - 0.469697
yjjT SSO_4521 putative enzymechromosome CDS4791257 1032 - 0.553295
yleA SSO_0615 conserved hypothetical proteinchromosome CDS655636 1425 - 0.540351
yliG SSO_0818 conserved hypothetical proteinchromosome CDS872248 1326 - 0.527149
ymfC SSO_1153 conserved hypothetical proteinchromosome CDS1234321 624 - 0.517628
ymjA SSO_1845 conserved hypothetical proteinchromosome CDS1941865 246 + 0.48374
yohI SSO_2196 putative regulator proteinchromosome CDS2302372 948 - 0.53903
yqcB SSO_2948 conserved hypothetical proteinchromosome CDS3092729 783 - 0.537676
yrdC SSO_3423 conserved hypothetical proteinchromosome CDS3603643 573 - 0.527051
yrfH SSO_3531 conserved hypothetical proteinchromosome CDS3691994 402 + 0.532338