Gene list
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COG category: Translation, ribosomal structure and biogenesis
Organism: Shewanella oneidensis MR-1, MR-1
Number of genes found: 198
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Shewanella oneidensis MR-1, MR-1 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
SO0037 | Sua5/YciO/YrdC/YwlC family protein | chromosome | CDS | 41557 | 567 | + | 0.485009 | |
SO0148 | hypothetical protein | chromosome | CDS | 156320 | 681 | + | 0.340675 | |
SO0202 | conserved hypothetical protein | chromosome | CDS | 210808 | 519 | + | 0.466281 | |
SO0337 | conserved hypothetical protein | chromosome | CDS | 338932 | 357 | + | 0.504202 | |
SO0358 | endoribonuclease L-PSP, putative | chromosome | CDS | 367847 | 384 | - | 0.471354 | |
SO0363 | hypothetical protein | chromosome | CDS | 373652 | 882 | + | 0.489796 | |
SO0387 | hypothetical protein | chromosome | CDS | 400896 | 825 | - | 0.404848 | |
SO0394 | conserved hypothetical protein | chromosome | CDS | 407220 | 969 | - | 0.49226 | |
SO0407 | ATP-dependent RNA helicase, DEAD box family | chromosome | CDS | 423730 | 1320 | + | 0.456061 | |
SO0508 | hypothetical protein | chromosome | CDS | 534068 | 789 | + | 0.501901 | |
SO0513 | prokaryotic and mitochondrial release factors family protein | chromosome | CDS | 537055 | 414 | - | 0.471014 | |
SO0541 | metallo-beta-lactamase family protein | chromosome | CDS | 560624 | 1437 | + | 0.49826 | |
SO0627 | conserved hypothetical protein | chromosome | CDS | 652739 | 558 | - | 0.464158 | |
SO0648 | conserved hypothetical protein | chromosome | CDS | 674729 | 627 | + | 0.507177 | |
SO0721 | conserved hypothetical protein | chromosome | CDS | 737575 | 252 | - | 0.436508 | |
SO0758 | hypothetical protein | chromosome | CDS | 774551 | 348 | - | 0.485632 | |
SO0764 | hypothetical protein | chromosome | CDS | 778043 | 810 | - | 0.483951 | |
SO0828 | conserved hypothetical protein | chromosome | CDS | 846823 | 1062 | - | 0.475518 | |
SO0873 | glutamyl-tRNA synthetase domain protein | chromosome | CDS | 903099 | 900 | - | 0.5 | |
SO0888 | amidase family protein | chromosome | CDS | 917169 | 1707 | + | 0.543058 | |
SO0980 | RNA methyltransferase, TrmA family | chromosome | CDS | 1009614 | 1149 | + | 0.48738 | |
SO1049 | acetyltransferase, GNAT family | chromosome | CDS | 1086745 | 477 | + | 0.494759 | |
SO1097 | conserved hypothetical protein | chromosome | CDS | 1139134 | 1134 | - | 0.457672 | |
SO1136 | ATP-dependent RNA helicase, DEAD box family | chromosome | CDS | 1177348 | 1344 | + | 0.514137 | |
SO1153 | exonuclease, putative | chromosome | CDS | 1196192 | 786 | + | 0.489822 | |
SO1185 | conserved hypothetical protein TIGR00092 | chromosome | CDS | 1228241 | 1092 | + | 0.47619 | |
SO1195 | conserved hypothetical protein TIGR00253 | chromosome | CDS | 1238792 | 300 | - | 0.403333 | |
SO1222 | hypothetical protein | chromosome | CDS | 1268276 | 1224 | - | 0.45098 | |
SO1372 | conserved hypothetical protein | chromosome | CDS | 1429893 | 258 | - | 0.468992 | |
SO1383 | ATP-dependent RNA helicase, DEAD box family | chromosome | CDS | 1439566 | 1302 | - | 0.496928 | |
SO1397 | cytosine deaminase | chromosome | CDS | 1453830 | 438 | - | 0.506849 | |
SO1404 | endoribonuclease L-PSP, putative | chromosome | CDS | 1459896 | 387 | - | 0.472868 | |
SO1501 | ATP-dependent RNA helicase, DEAD box family | chromosome | CDS | 1573651 | 1371 | + | 0.493071 | |
SO1575 | NOL1/NOP2/sun family putative RNA methylase | chromosome | CDS | 1651956 | 1461 | - | 0.502396 | |
SO1834 | acetyltransferase, GNAT family | chromosome | CDS | 1926862 | 537 | + | 0.437616 | |
SO1936 | acetyltransferase, GNAT family | chromosome | CDS | 2041368 | 498 | + | 0.449799 | |
SO1960 | conserved hypothetical protein | chromosome | CDS | 2065922 | 462 | + | 0.441558 | |
SO2006 | NifR3/Smm1 family protein | chromosome | CDS | 2104758 | 948 | - | 0.501055 | |
SO2200 | ribosomal protein S6 modification protein, putative | chromosome | CDS | 2314957 | 993 | - | 0.436052 | |
SO2215 | sun protein, putative | chromosome | CDS | 2327971 | 1215 | + | 0.469136 | |
SO2261 | RNA methyltransferase, TrmH family, group 1 | chromosome | CDS | 2376464 | 726 | + | 0.472452 | |
SO2346 | conserved hypothetical protein | chromosome | CDS | 2454029 | 879 | - | 0.433447 | |
SO2557 | conserved hypothetical protein | chromosome | CDS | 2687860 | 1440 | - | 0.48125 | |
SO2571 | ATP-dependent RNA helicase, DEAD box family | chromosome | CDS | 2701334 | 1428 | + | 0.477591 | |
SO2707 | acetyltransferase, GNAT family | chromosome | CDS | 2827375 | 516 | - | 0.474806 | |
SO2838 | ATP-dependent RNA helicase, DEAD box family | chromosome | CDS | 2955718 | 1350 | + | 0.461481 | |
SO2850 | acetyltransferase, GNAT family | chromosome | CDS | 2968081 | 585 | - | 0.468376 | |
SO2983 | hypothetical protein | chromosome | CDS | 3110252 | 393 | - | 0.508906 | |
SO3016 | Sua5/YciO/YrdC/YwlC family protein | chromosome | CDS | 3128009 | 621 | - | 0.478261 | |
SO3031 | siderophore biosynthesis protein, putative | chromosome | CDS | 3141502 | 621 | + | 0.479871 | |
SO3075 | RNA methyltransferase, TrmH family, putative | chromosome | CDS | 3195048 | 612 | - | 0.509804 | |
SO3080 | hemK family protein | chromosome | CDS | 3199688 | 918 | - | 0.473856 | |
SO3125 | ATP-dependent RNA helicase, DEAD box family | chromosome | CDS | 3252401 | 1284 | - | 0.482087 | |
SO3177 | formyl transferase domain protein | chromosome | CDS | 3315430 | 762 | - | 0.349081 | |
SO3291 | cytidine/deoxycytidylate deaminase family protein | chromosome | CDS | 3434995 | 585 | - | 0.494017 | |
SO3332 | transcriptional regulator, CopG family | chromosome | CDS | 3478716 | 429 | + | 0.470862 | |
SO3336 | hypothetical protein | chromosome | CDS | 3483466 | 573 | + | 0.458988 | |
SO3345 | translation initiation factor, putative | chromosome | CDS | 3491367 | 330 | + | 0.460606 | |
SO3388 | ATP-dependent RNA helicase, DEAD box family | chromosome | CDS | 3526441 | 1230 | - | 0.470732 | |
SO3448 | hypothetical protein | chromosome | CDS | 3592353 | 117 | - | 0.452991 | |
SO3456 | RNA methyltransferase, TrmA family | chromosome | CDS | 3600490 | 1350 | - | 0.477778 | |
SO3634 | nucleotidyltransferase family protein | chromosome | CDS | 3791930 | 681 | - | 0.493392 | |
SO3676 | hypothetical protein | chromosome | CDS | 3828945 | 342 | + | 0.461988 | |
SO3696 | hypothetical protein | chromosome | CDS | 3847226 | 1047 | + | 0.465138 | |
SO3783 | ATP-dependent RNA helicase, DEAD box family | chromosome | CDS | 3935464 | 1608 | + | 0.497512 | |
SO3832 | hemK family protein | chromosome | CDS | 3981537 | 861 | - | 0.483159 | |
SO3912 | TIM-barrel protein, yjbN family | chromosome | CDS | 4056905 | 1008 | - | 0.479167 | |
SO3934 | RNA methyltransferase, TrmH family, group 3 | chromosome | CDS | 4078781 | 741 | - | 0.495277 | |
SO4398 | conserved hypothetical protein TIGR00256 | chromosome | CDS | 4591451 | 438 | - | 0.490868 | |
SO4529 | RNA methyltransferase, TrmH family, group 2 | chromosome | CDS | 4724172 | 465 | + | 0.509677 | |
SO4551 | conserved hypothetical protein | chromosome | CDS | 4747284 | 354 | - | 0.491525 | |
SO4599 | ribonuclease, T2 family | chromosome | CDS | 4793172 | 1155 | + | 0.477056 | |
alaS | alanyl-tRNA synthetase | chromosome | CDS | 3569751 | 2625 | - | 0.473143 | |
ansA | L-asparaginase I | chromosome | CDS | 2530903 | 1014 | + | 0.476331 | |
argS | arginyl-tRNA synthetase | chromosome | CDS | 4282919 | 1746 | + | 0.493127 | |
asnS | asparaginyl-tRNA synthetase | chromosome | CDS | 2332942 | 1401 | - | 0.491792 | |
aspS | aspartyl-tRNA synthetase | chromosome | CDS | 2541563 | 1776 | - | 0.476914 | |
cafA | ribonuclease G | chromosome | CDS | 4252299 | 1467 | - | 0.503749 | |
cysS | cysteinyl-tRNA synthetase | chromosome | CDS | 1877253 | 1380 | + | 0.478986 | |
dbpA | ATP-dependent RNA helicase DbpA | chromosome | CDS | 924809 | 1377 | + | 0.481481 | |
deaD | ATP-dependent RNA helicase DeaD | chromosome | CDS | 4189577 | 1872 | + | 0.505876 | |
def-1 | polypeptide deformylase | chromosome | CDS | 37392 | 507 | - | 0.428008 | |
def-2 | polypeptide deformylase | chromosome | CDS | 1102263 | 546 | - | 0.485348 | |
def-3 | polypeptide deformylase | chromosome | CDS | 2660149 | 492 | - | 0.432927 | |
efp | translation elongation factor P | chromosome | CDS | 2437896 | 561 | - | 0.440285 | |
fmt | methionyl-tRNA formyltransferase | chromosome | CDS | 36420 | 957 | - | 0.510972 | |
frr | ribosome recycling factor | chromosome | CDS | 1713943 | 558 | + | 0.460573 | |
fusA-1 | translation elongation factor G | chromosome | CDS | 241889 | 2097 | + | 0.47258 | |
fusA-2 | translation elongation factor G | chromosome | CDS | 863203 | 2094 | + | 0.462751 | |
glnS | glutaminyl-tRNA synthetase | chromosome | CDS | 1872353 | 1671 | + | 0.447038 | |
glyQ | glycyl-tRNA synthetase, alpha subunit | chromosome | CDS | 17256 | 906 | - | 0.498896 | |
glyS | glycyl-tRNA synthetase, beta subunit | chromosome | CDS | 15180 | 2067 | - | 0.480406 | |
gshB | glutathione synthetase | chromosome | CDS | 849536 | 948 | - | 0.501055 | |
hisS | histidyl-tRNA synthetase | chromosome | CDS | 3462354 | 1278 | - | 0.478091 | |
hslR | heat shock protein 15 | chromosome | CDS | 170700 | 399 | - | 0.45614 | |
ileS | isoleucyl-tRNA synthetase | chromosome | CDS | 3685808 | 2823 | - | 0.476089 | |
infA | translation initiation factor IF-1 | chromosome | CDS | 2760959 | 219 | + | 0.447489 | |
infB | translation initiation factor IF-2 | chromosome | CDS | 1247966 | 2658 | + | 0.495862 | |
infC | translation initiation factor IF-3 | chromosome | CDS | 2412499 | 432 | + | 0.44213 | |
ksgA | dimethyladenosine transferase | chromosome | CDS | 3798650 | 807 | + | 0.491945 | |
leuS | leucyl-tRNA synthetase | chromosome | CDS | 1215819 | 2580 | - | 0.485271 | |
lysS | lysyl-tRNA synthetase | chromosome | CDS | 1025577 | 1503 | + | 0.477046 | |
map | methionine aminopeptidase, type I | chromosome | CDS | 1710307 | 798 | - | 0.466165 | |
miaA | tRNA delta(2)-isopentenylpyrophosphate transferase | chromosome | CDS | 628738 | 927 | + | 0.450917 | |
miaB | tRNA-i(6)A37 modification enzyme MiaB | chromosome | CDS | 1223880 | 1425 | - | 0.479298 | |
miaE | tRNA-(MS[2]IO[6]A)-hydroxylase | chromosome | CDS | 1875042 | 786 | + | 0.447837 | |
pcnB | polyA polymerase | chromosome | CDS | 901508 | 1317 | - | 0.501898 | |
pheS | phenylalanyl-tRNA synthetase, alpha subunit | chromosome | CDS | 2180858 | 984 | + | 0.465447 | |
pnp | polyribonucleotide nucleotidyltransferase | chromosome | CDS | 1254812 | 2109 | + | 0.458037 | |
prfA | peptide chain release factor 1 | chromosome | CDS | 3982400 | 1092 | - | 0.508242 | |
prmA | ribosomal protein L11 methyltransferase | chromosome | CDS | 408364 | 882 | - | 0.495465 | |
proS | prolyl-tRNA synthetase | chromosome | CDS | 3289870 | 1713 | + | 0.487449 | |
pth | peptidyl-tRNA hydrolase | chromosome | CDS | 1227499 | 588 | + | 0.469388 | |
queA | S-adenosylmethionine:tRNAribosyltransferase-isom erase | chromosome | CDS | 3243003 | 1038 | - | 0.483622 | |
rbfA | ribosome-binding factor A | chromosome | CDS | 1250687 | 444 | + | 0.468468 | |
rimK-1 | ribosomal protein S6 modification protein | chromosome | CDS | 568931 | 906 | + | 0.465784 | |
rimK-2 | ribosomal protein S6 modification protein | chromosome | CDS | 2383894 | 900 | + | 0.482222 | |
rimM | 16S rRNA processing protein RimM | chromosome | CDS | 1413702 | 534 | + | 0.456929 | |
rmf | ribosome modulation factor | chromosome | CDS | 1947212 | 177 | + | 0.418079 | |
rnd | ribonuclease D | chromosome | CDS | 2706706 | 1104 | - | 0.457428 | |
rne | ribonuclease E | chromosome | CDS | 2906071 | 3267 | + | 0.479951 | |
rnpA | ribonuclease P protein component | chromosome | CDS | 5908 | 357 | - | 0.448179 | |
rph | ribonuclease PH | chromosome | CDS | 4432337 | 714 | - | 0.498599 | |
rplA | ribosomal protein L1 | chromosome | CDS | 230234 | 702 | + | 0.44302 | |
rplB | ribosomal protein L2 | chromosome | CDS | 247492 | 825 | + | 0.498182 | |
rplC | ribosomal protein L3 | chromosome | CDS | 245912 | 639 | + | 0.469484 | |
rplD | ribosomal protein L4 | chromosome | CDS | 246568 | 606 | + | 0.490099 | |
rplE | ribosomal protein L5 | chromosome | CDS | 251405 | 540 | + | 0.451852 | |
rplF | ribosomal protein L6 | chromosome | CDS | 252688 | 534 | + | 0.485019 | |
rplI | ribosomal protein L9 | chromosome | CDS | 4074680 | 453 | - | 0.450331 | |
rplJ | ribosomal protein L10 | chromosome | CDS | 231201 | 501 | + | 0.479042 | |
rplK | ribosomal protein L11 | chromosome | CDS | 229801 | 429 | + | 0.445221 | |
rplL | ribosomal protein L7/L12 | chromosome | CDS | 231756 | 369 | + | 0.441734 | |
rplM | ribosomal protein L13 | chromosome | CDS | 4084824 | 429 | - | 0.459207 | |
rplN | ribosomal protein L14 | chromosome | CDS | 250698 | 369 | + | 0.471545 | |
rplO | ribosomal protein L15 | chromosome | CDS | 254291 | 435 | + | 0.487356 | |
rplP | ribosomal protein L16 | chromosome | CDS | 249671 | 411 | + | 0.462287 | |
rplQ | ribosomal protein L17 | chromosome | CDS | 258793 | 396 | + | 0.497475 | |
rplR | ribosomal protein L18 | chromosome | CDS | 253232 | 351 | + | 0.504274 | |
rplS | ribosomal protein L19 | chromosome | CDS | 1415032 | 354 | + | 0.457627 | |
rplT | ribosomal protein L20 | chromosome | CDS | 2413227 | 357 | + | 0.420168 | |
rplU | ribosomal protein L21 | chromosome | CDS | 3807340 | 312 | - | 0.439103 | |
rplV | ribosomal protein L22 | chromosome | CDS | 248625 | 333 | + | 0.495495 | |
rplW | ribosomal protein L23 | chromosome | CDS | 247170 | 306 | + | 0.45098 | |
rplX | ribosomal protein L24 | chromosome | CDS | 251078 | 315 | + | 0.425397 | |
rplY | ribosomal protein L25 | chromosome | CDS | 2210859 | 447 | + | 0.431767 | |
rpmA | ribosomal protein L27 | chromosome | CDS | 3807071 | 255 | - | 0.435294 | |
rpmB | ribosomal protein L28 | chromosome | CDS | 4424918 | 237 | - | 0.438819 | |
rpmC | ribosomal protein L29 | chromosome | CDS | 250081 | 192 | + | 0.46875 | |
rpmD | ribosomal protein L30 | chromosome | CDS | 254105 | 183 | + | 0.42623 | |
rpmE | ribosomal protein L31 | chromosome | CDS | 4279066 | 213 | - | 0.422535 | |
rpmF | ribosomal protein L32 | chromosome | CDS | 2901975 | 171 | - | 0.473684 | |
rpmG | ribosomal protein L33 | chromosome | CDS | 4424738 | 174 | - | 0.333333 | |
rpmH | ribosomal protein L34 | chromosome | CDS | 6281 | 138 | - | 0.543478 | |
rpmI | ribosomal protein L35 | chromosome | CDS | 2413016 | 195 | + | 0.435897 | |
rpmJ | ribosomal protein L36 | chromosome | CDS | 256095 | 114 | + | 0.473684 | |
rpsA | ribosomal protein S1 | chromosome | CDS | 2505090 | 1668 | - | 0.446643 | |
rpsB | ribosomal protein S2 | chromosome | CDS | 1711414 | 729 | + | 0.465021 | |
rpsC | ribosomal protein S3 | chromosome | CDS | 248967 | 693 | + | 0.477633 | |
rpsD | ribosomal protein S4 | chromosome | CDS | 257118 | 621 | + | 0.446055 | |
rpsE | ribosomal protein S5 | chromosome | CDS | 253595 | 504 | + | 0.472222 | |
rpsF | ribosomal protein S6 | chromosome | CDS | 4075722 | 396 | - | 0.482323 | |
rpsG | ribosomal protein S7 | chromosome | CDS | 241340 | 471 | + | 0.469214 | |
rpsH | ribosomal protein S8 | chromosome | CDS | 252285 | 393 | + | 0.473282 | |
rpsI | ribosomal protein S9 | chromosome | CDS | 4084417 | 393 | - | 0.475827 | |
rpsJ | ribosomal protein S10 | chromosome | CDS | 245573 | 312 | + | 0.464744 | |
rpsK | ribosomal protein S11 | chromosome | CDS | 256694 | 393 | + | 0.483461 | |
rpsL | ribosomal protein S12 | chromosome | CDS | 240885 | 375 | + | 0.498667 | |
rpsM | ribosomal protein S13 | chromosome | CDS | 256323 | 357 | + | 0.478992 | |
rpsN | ribosomal protein S14 | chromosome | CDS | 251955 | 306 | + | 0.480392 | |
rpsO | ribosomal protein S15 | chromosome | CDS | 1252211 | 270 | + | 0.451852 | |
rpsP | ribosomal protein S16 | chromosome | CDS | 1413436 | 249 | + | 0.493976 | |
rpsQ | ribosomal protein S17 | chromosome | CDS | 250272 | 249 | + | 0.421687 | |
rpsR | ribosomal protein S18 | chromosome | CDS | 4075169 | 228 | - | 0.429825 | |
rpsS | ribosomal protein S19 | chromosome | CDS | 248331 | 279 | + | 0.469534 | |
rpsT | ribosomal protein S20 | chromosome | CDS | 3691476 | 267 | + | 0.460674 | |
rpsU | ribosomal protein S21 | chromosome | CDS | 1339815 | 216 | - | 0.453704 | |
rrmJ | ribosomal RNA large subunit methyltransferase J | chromosome | CDS | 1239182 | 630 | + | 0.496825 | |
selB | selenocysteine-specific translation elongation factor | chromosome | CDS | 115656 | 2022 | + | 0.540059 | |
serS | seryl-tRNA synthetase | chromosome | CDS | 2422244 | 1287 | + | 0.4662 | |
smpA | small protein A | chromosome | CDS | 1540179 | 492 | - | 0.455285 | |
srmB | ATP-dependent RNA helicase SrmB | chromosome | CDS | 982197 | 1263 | - | 0.502771 | |
sun | sun protein | chromosome | CDS | 35131 | 1287 | - | 0.499611 | |
tgt | queuine tRNA-ribosyltransferase | chromosome | CDS | 3241717 | 1125 | - | 0.477333 | |
thrS | threonyl-tRNA synthetase | chromosome | CDS | 2410456 | 1929 | + | 0.454121 | |
trmA | tRNA (uracil-5-)-methyltransferase | chromosome | CDS | 213570 | 1101 | - | 0.443233 | |
trmD | tRNA (guanine-N1)-methyltransferase | chromosome | CDS | 1414251 | 747 | + | 0.504685 | |
trmU | tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase | chromosome | CDS | 2768717 | 1119 | + | 0.484361 | |
trpS | tryptophanyl-tRNA synthetase | chromosome | CDS | 300003 | 999 | + | 0.496496 | |
tsf | translation elongation factor Ts | chromosome | CDS | 1712262 | 852 | + | 0.449531 | |
tufA | translation elongation factor Tu | chromosome | CDS | 244057 | 1185 | + | 0.479325 | |
tufB | translation elongation factor Tu | chromosome | CDS | 227280 | 1185 | + | 0.478481 | |
tyrS | tyrosyl-tRNA synthetase | chromosome | CDS | 1371199 | 1197 | + | 0.470343 | |
valS | valyl-tRNA synthetase | chromosome | CDS | 3563491 | 2877 | + | 0.486618 | |
yfiA-1 | ribosomal subunit interface protein | chromosome | CDS | 3541770 | 357 | - | 0.436975 | |
yfiA-2 | ribosomal subunit interface protein | chromosome | CDS | 3561578 | 357 | + | 0.417367 | |
yfiA-3 | ribosomal subunit interface protein | chromosome | CDS | 4103607 | 288 | + | 0.399306 | |
yliG | MiaB-like putative RNA modifying enzyme YliG | chromosome | CDS | 4226192 | 1446 | + | 0.506916 |