TitleGenColors Logo
spacer
Home spacerGenomes
spacerMethods
spacerDocumentation spacerContactspacer spacerLeibniz FLI
spacer
QuickSearch
2024-05-05 13:15:04

Gene list

Applied filters:

COG category: Translation, ribosomal structure and biogenesis
Organism: Shigella boydii Sb227, Sb227

Number of genes found: 176

Free access
Sort by:

 

Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Shigella boydii Sb227, Sb227
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SBO_2292 putative transformylasechromosome CDS2280209 1983 + 0.511346
NA SBO_1279 conserved hypothetical proteinchromosome CDS1267877 393 - 0.51145
NA SBO_2556 putative ATP synthase beta subunitchromosome CDS2557791 741 - 0.551957
alaS SBO_2821 alanyl-tRNA synthetasechromosome CDS2830008 2631 + 0.536298
ansA SBO_1320 cytoplasmic L-asparaginase Ichromosome CDS1303836 1017 - 0.507375
ansB SBO_3033 periplasmic L-asparaginase IIchromosome CDS3032813 1047 + 0.52531
argS SBO_1124 arginine tRNA synthetasechromosome CDS1127799 1734 - 0.528835
asnS SBO_2221 asparagine tRNA synthetasechromosome CDS2205753 1401 - 0.528194
aspS SBO_1189 aspartate tRNA synthetasechromosome CDS1183469 1773 - 0.539199
cafA SBO_3141 bundles of cytoplasmic filamentschromosome CDS3143606 1488 + 0.521505
cca SBO_2912 tRNA nucleotidyl transferasechromosome CDS2916537 1239 + 0.561743
cysS SBO_0417 cysteine tRNA synthetasechromosome CDS432584 1320 - 0.543182
dbpA SBO_1718 ATP-dependent RNA helicasechromosome CDS1698741 1374 - 0.516739
deaD SBO_3220 inducible ATP-independent RNA helicasechromosome CDS3227057 1941 + 0.552808
def SBO_3280 peptide deformylasechromosome CDS3281972 510 + 0.462745
efp SBO_4309 elongation factor Pchromosome CDS4357832 567 - 0.499118
fmt SBO_3281 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferasechromosome CDS3282496 948 + 0.524262
frr SBO_0160 ribosome releasing factorchromosome CDS178890 558 + 0.507168
ftsJ SBO_3203 cell division proteinchromosome CDS3207327 630 + 0.501587
fusA SBO_3321 GTP-binding protein chain elongation factor EF-Gchromosome CDS3307350 2115 - 0.506383
glnS SBO_0542 glutamine tRNA synthetasechromosome CDS556975 1665 + 0.530931
gltX SBO_2426 glutamate tRNA synthetase, catalytic subunitchromosome CDS2421277 1416 - 0.528955
glyQ SBO_3565 glycine tRNA synthetase, alpha subunitchromosome CDS3571432 912 - 0.559211
glyS SBO_3564 glycine tRNA synthetase, beta subunitchromosome CDS3569353 2070 - 0.55314
gshB SBO_3043 glutathione synthetasechromosome CDS3040705 951 - 0.537329
hemK SBO_1855 possible protoporphyrinogen oxidasechromosome CDS1835732 834 - 0.551559
hisS SBO_2538 histidine tRNA synthetasechromosome CDS2535023 1275 - 0.541961
ileS SBO_0025 isoleucine tRNA synthetasechromosome CDS22483 2817 + 0.55733
infA SBO_0817 protein chain initiation factor IF-1chromosome CDS829029 219 - 0.484018
infB SBO_3214 protein chain initiation factor IF-2chromosome CDS3218977 2649 + 0.534541
infC SBO_1376 protein chain initiation factor IF-3chromosome CDS1352973 435 + 0.48046
iucB SBO_4338 siderophore biosynthesis proteinchromosome CDS4388327 948 + 0.563291
ksgA SBO_0040 S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferasechromosome CDS40671 822 - 0.532847
lasT SBO_4466 conserved hypothetical proteinchromosome CDS4519113 687 + 0.490539
leuS SBO_0506 leucine tRNA synthetasechromosome CDS522612 2583 - 0.532714
lysS SBO_3102 lysine tRNA synthetase, constitutivechromosome CDS3103299 1518 + 0.525692
map SBO_0156 methionine aminopeptidasechromosome CDS174730 795 - 0.510692
miaA SBO_4285 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferasechromosome CDS4334078 951 - 0.535226
pcnB SBO_0132 poly(A) polymerase Ichromosome CDS143948 1419 - 0.556025
pheS SBO_1379 phenylalanine tRNA synthetase, alpha-subunitchromosome CDS1354561 984 + 0.54065
pnp SBO_3218 polynucleotide phosphorylasechromosome CDS3223731 2205 + 0.534694
prfA SBO_1856 peptide chain release factor RF-1chromosome CDS1836565 1083 - 0.530933
prfB SBO_3101 peptide chain release factor RF-2chromosome CDS3102408 882 + 0.53288
prfC SBO_4436 peptide chain release factor RF-3chromosome CDS4486893 1590 + 0.532704
prfH SBO_0242 probable peptide chain release factorchromosome CDS257943 501 + 0.542914
prmA SBO_3253 methylase for 50S ribosomal subunit protein L11chromosome CDS3257303 882 + 0.543084
proS SBO_0183 proline tRNA synthetasechromosome CDS203036 1719 - 0.544503
pth SBO_1863 peptidyl-tRNA hydrolasechromosome CDS1844146 585 + 0.497436
queA SBO_0299 probably S-adenosylmethionine:tRNA ribosyltransferase-isomerasechromosome CDS313982 1071 + 0.539683
rbfA SBO_3215 ribosome-binding factor Achromosome CDS3221789 402 + 0.529851
rhlB SBO_3790 putative ATP-dependent RNA helicasechromosome CDS3813851 1266 - 0.522117
rhlE SBO_0685 putative ATP-dependent RNA helicasechromosome CDS697661 1365 + 0.564835
rimJ SBO_1998 RimJchromosome CDS1970546 585 - 0.494017
rimK SBO_0786 ribosomal protein S6 modification proteinchromosome CDS794796 903 + 0.55814
rimL SBO_1660 acetyl transferasechromosome CDS1642604 537 - 0.441341
rmf SBO_2278 ribosome modulation factorchromosome CDS2264439 168 - 0.541667
rna SBO_0476 RNase Ichromosome CDS494642 807 - 0.513011
rnd SBO_1284 RNase Dchromosome CDS1273596 1128 + 0.539894
rne SBO_1980 RNase Echromosome CDS1952408 3186 + 0.557753
rnpA SBO_3673 RnpAchromosome CDS3688070 360 - 0.558333
rph SBO_3645 RNase PHchromosome CDS3661432 717 - 0.570432
rplA SBO_4004 50S ribosomal subunit protein L1chromosome CDS4037302 705 + 0.516312
rplB SBO_3311 50S ribosomal subunit protein L2chromosome CDS3298825 822 - 0.526764
rplC SBO_3314 50S ribosomal subunit protein L3chromosome CDS3300579 630 - 0.514286
rplD SBO_3313 50S ribosomal subunit protein L4chromosome CDS3299963 606 - 0.529703
rplE SBO_3302 50S ribosomal subunit protein L5chromosome CDS3295181 540 - 0.496296
rplF SBO_3299 50S ribosomal subunit protein L6chromosome CDS3293889 534 - 0.522472
rplI SBO_4251 50S ribosomal subunit protein L9chromosome CDS4306456 450 - 0.495556
rplJ SBO_4005 50S ribosomal subunit protein L10chromosome CDS4038419 498 + 0.524096
rplK SBO_4003 50S ribosomal subunit protein L11chromosome CDS4036870 429 + 0.524476
rplL SBO_4006 50S ribosomal subunit protein L7/L12chromosome CDS4038983 366 + 0.461749
rplM SBO_3158 50S ribosomal subunit protein L13chromosome CDS3163824 429 + 0.503497
rplN SBO_3304 50S ribosomal subunit protein L14chromosome CDS3296060 372 - 0.510753
rplO SBO_3295 50S ribosomal subunit protein L15chromosome CDS3292387 435 - 0.535632
rplP SBO_3307 50S ribosomal subunit protein L16chromosome CDS3297041 411 - 0.518248
rplQ SBO_3288 50S ribosomal subunit protein L17chromosome CDS3287898 384 - 0.536458
rplR SBO_3298 50S ribosomal subunit protein L18chromosome CDS3293526 354 - 0.536723
rplS SBO_2742 50S ribosomal subunit protein L19chromosome CDS2753065 348 - 0.482759
rplT SBO_1378 50S ribosomal subunit protein L20chromosome CDS1353754 333 + 0.483483
rplU SBO_3196 50S ribosomal subunit protein L21chromosome CDS3201685 312 + 0.483974
rplV SBO_3309 50S ribosomal subunit protein L22chromosome CDS3298183 333 - 0.495495
rplW SBO_3312 50S ribosomal subunit protein L23chromosome CDS3299664 303 - 0.481848
rplX SBO_3303 50S ribosomal subunit protein L24chromosome CDS3295735 315 - 0.463492
rplY SBO_2139 50S ribosomal subunit protein L25chromosome CDS2112222 285 - 0.505263
rpmA SBO_3197 50S ribosomal subunit protein L27chromosome CDS3202017 258 + 0.496124
rpmB SBO_3639 50S ribosomal subunit protein L28chromosome CDS3657036 237 - 0.527426
rpmC SBO_3306 50S ribosomal subunit protein L29chromosome CDS3296850 192 - 0.536458
rpmD SBO_3296 50S ribosomal subunit protein L30chromosome CDS3292825 180 - 0.5
rpmE SBO_3953 50S ribosomal subunit protein L31chromosome CDS3980589 213 + 0.488263
rpmF SBO_1974 50S ribosomal subunit protein L32chromosome CDS1947793 174 - 0.54023
rpmG SBO_3638 50S ribosomal subunit protein L33chromosome CDS3656848 168 - 0.404762
rpmH SBO_3674 50S ribosomal subunit protein L34chromosome CDS3688446 141 - 0.51773
rpmI SBO_1377 50S ribosomal subunit protein Achromosome CDS1353504 198 + 0.494949
rpmJ SBO_3293 50S ribosomal subunit protein L36chromosome CDS3290900 117 - 0.478632
rpsA SBO_2199 30S ribosomal subunit protein S1chromosome CDS2177943 1674 + 0.510753
rpsB SBO_0157 30S ribosomal subunit protein S2chromosome CDS175892 726 + 0.512397
rpsC SBO_3308 30S ribosomal subunit protein S3chromosome CDS3297464 702 - 0.509971
rpsD SBO_3290 30S ribosomal subunit protein S4chromosome CDS3289337 621 - 0.505636
rpsE SBO_3297 30S ribosomal subunit protein S5chromosome CDS3293008 504 - 0.498016
rpsF SBO_4254 30S ribosomal subunit protein S6chromosome CDS4307500 396 - 0.527778
rpsG SBO_3322 30S ribosomal subunit protein S7chromosome CDS3309561 471 - 0.496815
rpsH SBO_3300 30S ribosomal subunit protein S8chromosome CDS3294435 393 - 0.501272
rpsI SBO_3159 30S ribosomal subunit protein S9chromosome CDS3164268 393 + 0.524173
rpsJ SBO_3315 30S ribosomal subunit protein S10chromosome CDS3301241 312 - 0.554487
rpsK SBO_3291 30S ribosomal subunit protein S11chromosome CDS3289991 390 - 0.515385
rpsL SBO_3323 30S ribosomal subunit protein S12chromosome CDS3310128 375 - 0.533333
rpsM SBO_3292 30S ribosomal subunit protein S13chromosome CDS3290397 357 - 0.518207
rpsN SBO_3301 30S ribosomal subunit protein S14chromosome CDS3294861 306 - 0.526144
rpsO SBO_3217 30S ribosomal subunit protein S15chromosome CDS3223283 270 + 0.518519
rpsP SBO_2745 30S ribosomal subunit protein S16chromosome CDS2754819 249 - 0.514056
rpsQ SBO_3305 30S ribosomal subunit protein S17chromosome CDS3296596 255 - 0.47451
rpsR SBO_4252 30S ribosomal subunit protein S18chromosome CDS4306947 228 - 0.526316
rpsS SBO_3310 30S ribosomal subunit protein S19chromosome CDS3298530 279 - 0.491039
rpsT SBO_0022 30S ribosomal subunit protein S20chromosome CDS20907 264 - 0.465909
rpsU SBO_2923 30S ribosomal subunit protein S21chromosome CDS2925972 216 + 0.518519
rsuA SBO_2141 16S pseudouridylate 516 synthasechromosome CDS2114540 696 + 0.525862
selB SBO_3590 selenocysteinyl-tRNA-specific translation factorchromosome CDS3598919 1845 - 0.560434
serS SBO_0826 serine tRNA synthetasechromosome CDS842267 1293 + 0.529776
sfhB SBO_2629 suppressor of ftsH mutationchromosome CDS2636166 981 - 0.525994
smpA SBO_2752 small membrane protein Achromosome CDS2762564 153 + 0.470588
spoU SBO_3726 putative RNA methylasechromosome CDS3743108 690 - 0.553623
srmB SBO_2606 ATP-dependent RNA helicasechromosome CDS2611242 1335 + 0.550562
sun SBO_3282 conserved hypothetical proteinchromosome CDS3283489 1290 + 0.49845
tgt SBO_0300 tRNA-guanine transglycosylasechromosome CDS315108 1128 + 0.512411
thrS SBO_1375 threonine tRNA synthetasechromosome CDS1350933 1929 + 0.497667
trmA SBO_3984 tRNA (uracil-5-)-methyltransferasechromosome CDS4020747 1101 - 0.510445
trmD SBO_2743 tRNA methyltransferasechromosome CDS2753454 768 - 0.533854
trpS SBO_3371 tryptophan tRNA synthetasechromosome CDS3354659 1005 - 0.522388
truA SBO_2355 pseudouridylate synthase Ichromosome CDS2343719 813 - 0.557196
truB SBO_3216 tRNA pseudouridine 5S synthasechromosome CDS3222190 945 + 0.522751
tsf SBO_0158 protein chain elongation factor EF-Tschromosome CDS176875 852 + 0.496479
tufA SBO_3320 protein chain elongation factor EF-Tuchromosome CDS3306095 1185 - 0.531646
tufB SBO_4000 protein chain elongation factor EF-Tuchromosome CDS4034366 1185 + 0.533333
tyrS SBO_1497 tyrosine tRNA synthetasechromosome CDS1473590 1275 + 0.516078
valS SBO_4182 valine tRNA synthetasechromosome CDS4236482 2856 + 0.552171
yabO SBO_0045 conserved hypothetical proteinchromosome CDS47358 660 - 0.542424
yadB SBO_0133 putative tRNA synthetasechromosome CDS145405 927 - 0.533981
yadP SBO_0136 conserved hypothetical proteinchromosome CDS147720 540 - 0.559259
yaeJ SBO_0180 conserved hypothetical proteinchromosome CDS200817 423 + 0.550827
ybfP SBO_0551 putative pectinasechromosome CDS566299 495 + 0.454545
ybjF SBO_0793 putative enzymechromosome CDS801347 1128 + 0.546986
yceC SBO_1977 conserved hypothetical proteinchromosome CDS1949434 960 - 0.516667
ycfB SBO_1906 conserved hypothetical proteinchromosome CDS1885842 1152 + 0.532118
ychF SBO_1864 putative GTP-binding proteinchromosome CDS1844847 1092 + 0.510989
yciH SBO_1782 conserved hypothetical proteinchromosome CDS1760097 330 - 0.487879
yciL SBO_1797 conserved hypothetical proteinchromosome CDS1775977 873 - 0.544101
yciO SBO_1799 conserved hypothetical proteinchromosome CDS1778983 657 - 0.496195
yeiP SBO_2153 putative elongation factorchromosome CDS2128994 828 - 0.506039
yfcB SBO_2368 putative adenine-specific methylasechromosome CDS2356458 1266 - 0.514218
yfhC SBO_2587 putative deaminasechromosome CDS2594433 537 - 0.540037
yfiA SBO_2635 putative yhbH sigma 54 modulatorchromosome CDS2640995 342 + 0.459064
yfiF SBO_2613 conserved hypothetical proteinchromosome CDS2617173 1038 - 0.565511
yfjA SBO_2744 conserved hypothetical proteinchromosome CDS2754252 558 - 0.487455
ygcA SBO_2666 putative enzymechromosome CDS2670412 1302 - 0.513057
ygjO SBO_2945 putative enzymechromosome CDS2951967 1137 - 0.539138
yhaR SBO_2978 conserved hypothetical proteinchromosome CDS2981829 453 - 0.523179
yhbY SBO_3202 conserved hypothetical proteinchromosome CDS3206908 294 - 0.486395
yhdG SBO_3254 putative dehydrogenasechromosome CDS3258513 966 + 0.520704
yibK SBO_3612 conserved hypothetical proteinchromosome CDS3630000 474 + 0.550633
yihZ SBO_3901 conserved hypothetical proteinchromosome CDS3928022 438 + 0.552511
yjbC SBO_4050 conserved hypothetical proteinchromosome CDS4093226 873 + 0.521191
yjbN SBO_4068 conserved hypothetical proteinchromosome CDS4110953 1038 - 0.534682
yjeA SBO_4301 putative lysyl-tRNA synthetasechromosome CDS4350471 1008 - 0.516865
yjeJ SBO_4311 conserved hypothetical proteinchromosome CDS4359863 870 + 0.451724
yjfH SBO_4276 conserved hypothetical proteinchromosome CDS4324272 732 - 0.557377
yjgF SBO_4203 conserved hypothetical proteinchromosome CDS4251447 426 + 0.504695
yjgH SBO_4199 conserved hypothetical proteinchromosome CDS4249191 396 + 0.472222
yjiI SBO_4382 conserved hypothetical proteinchromosome CDS4434772 501 + 0.481038
yjjT SBO_4432 putative enzymechromosome CDS4484148 1032 - 0.546512
ykgM SBO_0223 putative ribosomal proteinchromosome CDS236559 264 + 0.462121
yleA SBO_0525 conserved hypothetical proteinchromosome CDS544412 1425 - 0.541053
yliG SBO_0727 conserved hypothetical proteinchromosome CDS746030 1326 - 0.527903
ymfC SBO_1904 conserved hypothetical proteinchromosome CDS1884739 624 + 0.514423
yqcB SBO_2672 conserved hypothetical proteinchromosome CDS2679700 783 - 0.535121
yrdC SBO_3276 conserved hypothetical proteinchromosome CDS3279125 573 - 0.525305
yrfH SBO_3387 conserved hypothetical proteinchromosome CDS3371372 402 + 0.532338