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2024-04-30 07:33:18

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Shigella dysenteriae Sd197, Sd197

Number of genes found: 179

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Shigella dysenteriae Sd197, Sd197
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SDY_1669 hypothetical proteinchromosome CDS1529522 1737 - 0.557283
NA SDY_2728 putative ATP synthase beta subunitchromosome CDS2526038 738 - 0.55149
NA SDY_1750 hypothetical proteinchromosome CDS1593696 249 + 0.506024
NA SDY_2451 putative transformylasechromosome CDS2250985 1635 + 0.515596
NA SDY_1749 hypothetical proteinchromosome CDS1593031 435 + 0.48046
NA SDY_2760 hypothetical proteinchromosome CDS2560844 360 - 0.511111
NA SDY_2883 conserved hypothetical proteinchromosome CDS2667174 1044 + 0.54023
NA SDY_1713 conserved hypothetical proteinchromosome CDS1566429 393 + 0.51145
NA SDY_0577 putative bacteriophage proteinchromosome CDS553055 558 - 0.473118
NA SDY_0985 conserved hypothetical proteinchromosome CDS933742 387 - 0.542636
NA SDY_0313 hypothetical proteinchromosome CDS305221 405 + 0.303704
alaS SDY_2893 alanyl-tRNA synthetasechromosome CDS2673153 2631 - 0.535158
ansA SDY_1506 cytoplasmic L-asparaginase Ichromosome CDS1377709 1017 - 0.507375
ansB SDY_3115 periplasmic L-asparaginase IIchromosome CDS2888943 1047 + 0.5234
argS SDY_1180 arginine tRNA synthetasechromosome CDS1093741 1734 + 0.532872
asnS SDY_2327 asparagine tRNA synthetasechromosome CDS2113677 1401 + 0.523198
aspS SDY_1153 aspartate tRNA synthetasechromosome CDS1071747 1773 - 0.540891
cafA SDY_3422 bundles of cytoplasmic filamentschromosome CDS3180065 1488 - 0.518817
cca SDY_3239 tRNA nucleotidyl transferasechromosome CDS3002007 1239 + 0.564972
cysS SDY_0278 cysteine tRNA synthetasechromosome CDS272589 1386 + 0.546898
deaD SDY_3341 inducible ATP-independent RNA helicasechromosome CDS3096682 1941 - 0.553323
def SDY_3463 peptide deformylasechromosome CDS3216126 510 + 0.462745
efp SDY_4390 elongation factor Pchromosome CDS4109639 567 + 0.500882
fmt SDY_3464 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferasechromosome CDS3216650 948 + 0.523207
frr SDY_0188 ribosome releasing factorchromosome CDS193134 558 + 0.507168
ftsJ SDY_3360 cell division proteinchromosome CDS3118440 630 - 0.501587
fusA SDY_3501 GTP-binding protein chain elongation factor EF-Gchromosome CDS3238732 2115 - 0.508274
glnS SDY_0614 glutamine tRNA synthetasechromosome CDS579328 1665 + 0.524925
gltX SDY_2600 glutamate tRNA synthetase, catalytic subunitchromosome CDS2396823 1416 - 0.526836
glyQ SDY_4344 glycine tRNA synthetase, alpha subunitchromosome CDS4070118 912 + 0.554825
glyS SDY_4345 glycine tRNA synthetase, beta subunitchromosome CDS4071039 2070 + 0.554589
gshB SDY_3125 glutathione synthetasechromosome CDS2896845 951 - 0.53102
hemK SDY_1261 possible protoporphyrinogen oxidasechromosome CDS1168185 834 + 0.552758
hisS SDY_2710 histidine tRNA synthetasechromosome CDS2502579 1275 - 0.545098
ileS SDY_0048 isoleucine tRNA synthetasechromosome CDS41180 2817 + 0.555201
infA SDY_2377 protein chain initiation factor IF-1chromosome CDS2180223 219 + 0.484018
infB SDY_3347 protein chain initiation factor IF-2chromosome CDS3104053 2673 - 0.533483
infC SDY_1813 protein chain initiation factor IF-3chromosome CDS1649160 435 - 0.478161
ksgA SDY_0076 S-adenosylmethionine-6-N',N'-adenosyldimethyltra nsferasechromosome CDS70731 822 - 0.529197
lasT SDY_4664 conserved hypothetical proteinchromosome CDS4368522 687 + 0.491994
leuS SDY_0564 leucine tRNA synthetasechromosome CDS545011 2583 - 0.53194
lysS SDY_3192 lysine tRNA synthetase, constitutivechromosome CDS2958869 1518 + 0.525692
map SDY_0184 methionine aminopeptidasechromosome CDS188974 795 - 0.501887
miaA SDY_4418 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferasechromosome CDS4133625 951 - 0.528917
pcnB SDY_0159 poly(A) polymerase Ichromosome CDS158058 1365 - 0.561905
pheS SDY_1809 phenylalanine tRNA synthetase, alpha-subunitchromosome CDS1647027 984 - 0.54065
pmrD SDY_2455 polymyxin resistance protein Bchromosome CDS2256252 261 - 0.444444
pnp SDY_3343 polynucleotide phosphorylasechromosome CDS3099744 2205 - 0.53424
prfA SDY_1260 peptide chain release factor RF-1chromosome CDS1167103 1083 + 0.531856
prfB SDY_3191 peptide chain release factor RF-2chromosome CDS2957978 882 + 0.536281
prfC SDY_4634 peptide chain release factor RF-3chromosome CDS4336776 1590 + 0.537107
prfH SDY_0481 probable peptide chain release factorchromosome CDS467989 501 - 0.546906
prmA SDY_3436 methylase for 50S ribosomal subunit protein L11chromosome CDS3193564 882 + 0.545351
proS SDY_0213 proline tRNA synthetasechromosome CDS218029 1719 - 0.541012
pth SDY_1253 peptidyl-tRNA hydrolasechromosome CDS1160020 585 - 0.499145
queA SDY_0329 probable S-adenosylmethionine:tRNA ribosyltransferase-isomerasechromosome CDS317827 1071 - 0.542484
rbfA SDY_3346 ribosome-binding factor Achromosome CDS3103488 402 - 0.524876
rhlB SDY_3969 putative ATP-dependent RNA helicasechromosome CDS3697522 1266 + 0.518957
rhlE SDY_0806 putative ATP-dependent RNA helicasechromosome CDS752216 1365 - 0.561905
rimJ SDY_2086 acetylation of N-terminal alanine of 30S ribosomal subunit protein S5chromosome CDS1895321 585 - 0.492308
rimK SDY_0743 ribosomal protein S6 modification proteinchromosome CDS691731 903 - 0.559247
rimL SDY_1751 acetyl transferasechromosome CDS1593936 540 - 0.442593
rmf SDY_0926 ribosome modulation factorchromosome CDS877056 168 + 0.541667
rnd SDY_1708 RNase Dchromosome CDS1559974 1128 - 0.538121
rne SDY_2067 RNase Echromosome CDS1876396 3186 + 0.553672
rnpA SDY_4186 RNase P, protein componentchromosome CDS3920372 360 + 0.555556
rph SDY_4074 RNase PHchromosome CDS3809358 717 - 0.560669
rplA SDY_3744 50S ribosomal subunit protein L1chromosome CDS3479085 705 - 0.514894
rplB SDY_3493 50S ribosomal subunit protein L2chromosome CDS3232981 822 - 0.524331
rplC SDY_3496 50S ribosomal subunit protein L3chromosome CDS3234735 630 - 0.514286
rplD SDY_3495 50S ribosomal subunit protein L4chromosome CDS3234119 606 - 0.529703
rplE SDY_3484 50S ribosomal subunit protein L5chromosome CDS3229337 540 - 0.5
rplF SDY_3481 50S ribosomal subunit protein L6chromosome CDS3228045 534 - 0.520599
rplI SDY_4372 50S ribosomal subunit protein L9chromosome CDS4093687 450 + 0.495556
rplJ SDY_3743 50S ribosomal subunit protein L10chromosome CDS3478175 498 - 0.526104
rplK SDY_3745 50S ribosomal subunit protein L11chromosome CDS3479793 429 - 0.522144
rplL SDY_3742 50S ribosomal subunit protein L7/L12chromosome CDS3477743 366 - 0.464481
rplM SDY_3407 50S ribosomal subunit protein L13chromosome CDS3162242 429 - 0.508159
rplN SDY_3486 50S ribosomal subunit protein L14chromosome CDS3230216 372 - 0.510753
rplO SDY_3477 50S ribosomal subunit protein L15chromosome CDS3226543 435 - 0.535632
rplP SDY_3489 50S ribosomal subunit protein L16chromosome CDS3231197 411 - 0.518248
rplQ SDY_3470 50S ribosomal subunit protein L17chromosome CDS3222054 384 - 0.536458
rplR SDY_3480 50S ribosomal subunit protein L18chromosome CDS3227682 354 - 0.533898
rplS SDY_2780 50S ribosomal subunit protein L19chromosome CDS2575807 348 - 0.482759
rplT SDY_1811 50S ribosomal subunit protein L20chromosome CDS1648460 357 - 0.478992
rplU SDY_3367 50S ribosomal subunit protein L21chromosome CDS3124399 312 - 0.483974
rplV SDY_3491 50S ribosomal subunit protein L22chromosome CDS3232339 333 - 0.498498
rplW SDY_3494 50S ribosomal subunit protein L23chromosome CDS3233820 303 - 0.475248
rplX SDY_3485 50S ribosomal subunit protein L24chromosome CDS3229891 315 - 0.463492
rplY SDY_0894 50S ribosomal subunit protein L25chromosome CDS841509 285 - 0.505263
rpmA SDY_3366 50S ribosomal subunit protein L27chromosome CDS3124121 258 - 0.5
rpmB SDY_4067 50S ribosomal subunit protein L28chromosome CDS3803707 237 - 0.527426
rpmC SDY_3488 50S ribosomal subunit protein L29chromosome CDS3231006 192 - 0.536458
rpmD SDY_3478 50S ribosomal subunit protein L30chromosome CDS3226981 180 - 0.5
rpmE SDY_3801 50S ribosomal subunit protein L31chromosome CDS3539529 213 - 0.488263
rpmF SDY_2061 50S ribosomal subunit protein L32chromosome CDS1872449 174 - 0.54023
rpmG SDY_4066 50S ribosomal subunit protein L33chromosome CDS3803519 168 - 0.404762
rpmH SDY_4185 50S ribosomal subunit protein L34chromosome CDS3920215 141 + 0.524823
rpmI SDY_1812 50S ribosomal subunit protein Achromosome CDS1648869 198 - 0.489899
rpmJ SDY_3475 50S ribosomal subunit protein L36chromosome CDS3225056 117 - 0.478632
rpsA SDY_2347 30S ribosomal subunit protein S1chromosome CDS2139536 1674 - 0.507766
rpsB SDY_0185 30S ribosomal subunit protein S2chromosome CDS190136 726 + 0.509642
rpsC SDY_3490 30S ribosomal subunit protein S3chromosome CDS3231620 702 - 0.507123
rpsD SDY_3472 30S ribosomal subunit protein S4chromosome CDS3223493 621 - 0.505636
rpsE SDY_3479 30S ribosomal subunit protein S5chromosome CDS3227164 504 - 0.5
rpsF SDY_4369 30S ribosomal subunit protein S6chromosome CDS4092697 396 + 0.527778
rpsG SDY_3502 30S ribosomal subunit protein S7chromosome CDS3240943 471 - 0.492569
rpsH SDY_3482 30S ribosomal subunit protein S8, and regulatorchromosome CDS3228591 393 - 0.501272
rpsI SDY_3406 30S ribosomal subunit protein S9chromosome CDS3161834 393 - 0.521628
rpsJ SDY_3497 30S ribosomal subunit protein S10chromosome CDS3235397 312 - 0.554487
rpsK SDY_3473 30S ribosomal subunit protein S11chromosome CDS3224147 390 - 0.517949
rpsL SDY_3503 30S ribosomal subunit protein S12chromosome CDS3241510 375 - 0.533333
rpsM SDY_3474 30S ribosomal subunit protein S13chromosome CDS3224553 357 - 0.515406
rpsN SDY_3483 30S ribosomal subunit protein S14chromosome CDS3229017 306 - 0.526144
rpsO SDY_3344 30S ribosomal subunit protein S15chromosome CDS3102126 270 - 0.514815
rpsP SDY_2783 30S ribosomal subunit protein S16chromosome CDS2577561 249 - 0.51004
rpsQ SDY_3487 30S ribosomal subunit protein S17chromosome CDS3230752 255 - 0.47451
rpsR SDY_4371 30S ribosomal subunit protein S18chromosome CDS4093418 228 + 0.526316
rpsS SDY_3492 30S ribosomal subunit protein S19chromosome CDS3232686 279 - 0.491039
rpsT SDY_0045 30S ribosomal subunit protein S20chromosome CDS39604 264 - 0.465909
rpsU SDY_3249 30S ribosomal subunit protein S21chromosome CDS3011084 216 + 0.518519
rsuA SDY_0896 16S pseudouridylate 516 synthasechromosome CDS843828 696 + 0.530172
selB SDY_4213 selenocysteinyl-tRNA-specific translation factorchromosome CDS3943823 1845 + 0.56477
serS SDY_2368 serine tRNA synthetase; also charges selenocystein tRNA with serinechromosome CDS2165833 1293 - 0.526682
sfhB SDY_2837 suppressor of ftsH mutationchromosome CDS2630800 981 - 0.529052
smpA SDY_2790 small protein A precursorchromosome CDS2585159 300 + 0.493333
spoU SDY_4083 putative RNA methylasechromosome CDS3818037 690 + 0.550725
srmB SDY_2817 ATP-dependent RNA helicasechromosome CDS2607737 1335 + 0.545318
sun SDY_3465 conserved hypothetical proteinchromosome CDS3217643 1290 + 0.495349
tgt SDY_0328 tRNA-guanine transglycosylasechromosome CDS316645 1128 - 0.513298
thrS SDY_1814 threonine tRNA synthetasechromosome CDS1649706 1929 - 0.499222
trmA SDY_3763 tRNA (uracil-5-)-methyltransferasechromosome CDS3495136 1101 + 0.508629
trmD SDY_2781 tRNA methyltransferasechromosome CDS2576196 768 - 0.532552
trpS SDY_3695 tryptophan tRNA synthetasechromosome CDS3426512 1005 + 0.523383
truA SDY_2517 pseudouridylate synthase Ichromosome CDS2315511 813 - 0.555966
truB SDY_3345 tRNA pseudouridine 5S synthasechromosome CDS3102544 945 - 0.52381
tsf SDY_0186 protein chain elongation factor EF-Tschromosome CDS191119 852 + 0.496479
tufA SDY_3500 protein chain elongation factor EF-Tuchromosome CDS3237477 1185 - 0.533333
tufB SDY_3748 protein chain elongation factor EF-Tuchromosome CDS3481540 1185 - 0.535021
tyrS SDY_1860 tyrosine tRNA synthetasechromosome CDS1695449 1275 - 0.520784
valS SDY_4282 valine tRNA synthetasechromosome CDS4009180 2856 - 0.553221
yabO SDY_0082 conserved hypothetical proteinchromosome CDS78719 660 - 0.540909
yabP SDY_0081 conserved hypothetical proteinchromosome CDS77596 717 + 0.3947
yadB SDY_0160 putative tRNA synthetasechromosome CDS159515 927 - 0.533981
yadP SDY_0163 conserved hypothetical proteinchromosome CDS161830 540 - 0.559259
yaeJ SDY_0210 conserved hypothetical proteinchromosome CDS215862 423 + 0.536643
ybjF SDY_0736 putative enzymechromosome CDS684954 1128 - 0.544326
yceC SDY_2065 conserved hypothetical proteinchromosome CDS1874864 960 - 0.515625
ycfB SDY_2019 conserved hypothetical proteinchromosome CDS1827448 1152 + 0.527778
ychF SDY_1252 putative GTP-binding proteinchromosome CDS1158812 1092 - 0.510989
yciH SDY_1358 conserved hypothetical proteinchromosome CDS1255239 330 + 0.484848
yciL SDY_1339 conserved hypothetical proteinchromosome CDS1237404 873 + 0.54181
yciO SDY_1335 conserved hypothetical proteinchromosome CDS1235319 657 + 0.48554
yeiP SDY_0908 putative elongation factorchromosome CDS858289 828 - 0.508454
yfcB SDY_2530 putative adenine-specific methylasechromosome CDS2327600 1266 - 0.514218
yfhC SDY_2749 putative deaminasechromosome CDS2551235 537 - 0.528864
yfiA SDY_2768 putative yhbH sigma 54 modulatorchromosome CDS2566779 342 - 0.461988
yfiF SDY_2824 conserved hypothetical proteinchromosome CDS2613347 1038 - 0.563584
yfjA SDY_2782 conserved hypothetical proteinchromosome CDS2576994 558 - 0.491039
ygcA SDY_3002 putative enzymechromosome CDS2769674 1302 - 0.511521
ygjO SDY_3267 putative enzymechromosome CDS3034742 1167 - 0.533847
yhbH SDY_3384 probable sigma-54 modulation proteinchromosome CDS3137422 288 + 0.444444
yhbY SDY_3361 conserved hypothetical proteinchromosome CDS3119195 294 + 0.482993
yhdG SDY_3437 putative dehydrogenasechromosome CDS3194774 966 + 0.52381
yibK SDY_4039 conserved hypothetical proteinchromosome CDS3776996 474 + 0.552743
yihZ SDY_3856 conserved hypothetical proteinchromosome CDS3588905 438 - 0.545662
yjbC SDY_4310 conserved hypothetical proteinchromosome CDS4038749 873 - 0.515464
yjbN SDY_4525 conserved hypothetical proteinchromosome CDS4233686 1038 - 0.530829
yjeA SDY_4399 putative lysyl-tRNA synthetasechromosome CDS4116553 1008 + 0.515873
yjfH SDY_4409 conserved hypothetical proteinchromosome CDS4123832 732 - 0.558743
yjgF SDY_4262 conserved hypothetical proteinchromosome CDS3996088 426 - 0.511737
yjgH SDY_4266 conserved hypothetical proteinchromosome CDS3998374 396 - 0.469697
yjjT SDY_4630 putative enzymechromosome CDS4334031 1032 - 0.556202
yleA SDY_0597 conserved hypothetical proteinchromosome CDS567017 1425 - 0.537544
ymfC SDY_2017 conserved hypothetical proteinchromosome CDS1826345 624 + 0.522436
yohI SDY_2147 putative regulator proteinchromosome CDS1945818 576 + 0.520833
yqcB SDY_3008 conserved hypothetical proteinchromosome CDS2778965 783 - 0.53129
yrdC SDY_3459 conserved hypothetical proteinchromosome CDS3213279 573 - 0.528796
yrfH SDY_3678 conserved hypothetical proteinchromosome CDS3410412 402 - 0.529851