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2024-04-27 15:24:40

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Escherichia coli W3110, K-12

Number of genes found: 186

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Escherichia coli W3110, K-12
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
alaS alanyl-tRNA synthetasechromosome CDS2818037 2631 - 0.536298
ansA cytoplasmic L-asparaginase Ichromosome CDS1852574 1017 + 0.511308
ansB periplasmic L-asparaginase IIchromosome CDS3098338 1047 - 0.526266
argS arginyl-tRNA synthetasechromosome CDS1961776 1734 + 0.532872
asnS asparaginyl tRNA synthetasechromosome CDS988007 1401 - 0.523911
aspS aspartyl-tRNA synthetasechromosome CDS1950464 1773 - 0.537507
cca fused tRNA nucleotidyl transferase and 2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatasechromosome CDS3200547 1239 + 0.56255
cysS cysteinyl-tRNA synthetasechromosome CDS553834 1386 + 0.544733
dbpA ATP-dependent RNA helicase specific for 23S rRNAchromosome CDS1411225 1374 + 0.519651
deaD ATP-dependent RNA helicasechromosome CDS3305826 1890 - 0.555556
def peptide deformylasechromosome CDS4206217 510 - 0.462745
dtd D-Tyr-tRNA(Tyr) deacylasechromosome CDS3559229 438 - 0.550228
dusB tRNA-dihydrouridine synthase Bchromosome CDS3410135 966 + 0.522774
dusC tRNA-dihydrouridine synthase Cchromosome CDS2232772 948 - 0.542194
efp Elongation factor EF-Pchromosome CDS4380379 567 + 0.493827
flxA hypothetical proteinchromosome CDS1648119 333 + 0.429429
fmt 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferasechromosome CDS4205255 948 - 0.528481
frr ribosome recycling factorchromosome CDS192872 558 + 0.508961
fusA protein chain elongation factor EF-Gchromosome CDS4166902 2115 + 0.508274
glnS glutamyl-tRNA synthetasechromosome CDS706515 1665 + 0.524925
gltX glutamyl-tRNA synthetasechromosome CDS2524703 1416 - 0.525424
glyQ glycine tRNA synthetase, alpha subunitchromosome CDS3915097 912 + 0.561404
glyS glycine tRNA synthetase, beta subunitchromosome CDS3916018 2070 + 0.554106
gshB glutathione synthetasechromosome CDS3090534 951 + 0.534175
hisS histidyl tRNA synthetasechromosome CDS2637957 1275 - 0.547451
hslR ribosome-associated heat shock protein Hsp15chromosome CDS4110667 402 - 0.534826
ileS isoleucyl-tRNA synthetasechromosome CDS22391 2817 + 0.557685
infA translation initiation factor IF-1chromosome CDS926647 219 - 0.484018
infB fused protein chain initiation factor 2, IF2chromosome CDS3313197 2673 - 0.534231
infC protein chain initiation factor IF-3chromosome CDS1801810 543 - 0.486188
kptA 2'-phosphotransferasechromosome CDS4565610 555 + 0.508108
ksgA S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferasechromosome CDS51609 822 - 0.530414
leuS leucyl-tRNA synthetasechromosome CDS672623 2583 - 0.533488
ligT 2'-5' RNA ligasechromosome CDS161501 531 - 0.559322
lysS lysine tRNA synthetase, constitutivechromosome CDS3032313 1518 - 0.530962
lysU lysine tRNA synthetase, induciblechromosome CDS4357878 1518 - 0.474308
map methionine aminopeptidasechromosome CDS188712 795 - 0.504403
miaA delta(2)-isopentenylpyrophosphate tRNA-adenosine transferasechromosome CDS4403932 951 + 0.534175
miaB isopentenyl-adenosine A37 tRNA methylthiolasechromosome CDS693953 1425 - 0.541754
pcnB poly(A) polymerase Ichromosome CDS157729 1398 - 0.558655
pheS phenylalanine tRNA synthetase, alpha subunitchromosome CDS1799673 984 - 0.538618
pnp polynucleotide phosphorylase/polyadenylasechromosome CDS3308888 2205 - 0.536961
poxA predicted lysyl-tRNA synthetasechromosome CDS4387323 978 + 0.526585
prfA peptide chain release factor RF-1chromosome CDS1266589 1083 + 0.530009
prfB peptide chain release factor RF-2chromosome CDS3034864 1098 - 0.535519
prfC peptide chain release factor RF-3chromosome CDS4614094 1590 + 0.540252
prfH predicted peptide chain release factorchromosome CDS253702 501 + 0.542914
prmA methylase for 50S ribosomal subunit protein L11chromosome CDS3408925 882 + 0.543084
prmB N5-glutamine methyltransferasechromosome CDS2452954 933 - 0.525188
prmC N5-glutamine methyltransferase, modifies release factors RF-1 and RF-2chromosome CDS1267671 834 + 0.551559
proS prolyl-tRNA synthetasechromosome CDS217057 1719 - 0.545084
pth peptidyl-tRNA hydrolasechromosome CDS1259506 585 - 0.497436
queA S-adenosylmethionine:tRNAribosyltransferase-isom erasechromosome CDS424235 1071 + 0.54155
rbfA 30s ribosome binding factorchromosome CDS3312632 402 - 0.529851
relE toxin of the RelE-RelB toxin-antitoxin systemchromosome CDS1647060 288 - 0.46875
rhlB ATP-dependent RNA helicasechromosome CDS3671051 1266 + 0.525276
rhlE RNA helicasechromosome CDS831294 1365 + 0.567033
rimJ ribosomal-protein-S5-alanine N-acetyltransferasechromosome CDS1127139 585 + 0.494017
rimK ribosomal protein S6 modification proteinchromosome CDS892389 903 + 0.562569
rimL ribosomal-protein-L7/L12-serineacetyltransferasechromosome CDS1500652 540 + 0.433333
rimM 16S rRNA processing proteinchromosome CDS2744026 549 - 0.489982
rlmB 23S rRNA (Gm2251)-methyltransferasechromosome CDS4413955 732 + 0.562842
rluA pseudouridine synthase for 23S rRNA (position 746) and tRNAphe(position 32)chromosome CDS59687 660 - 0.539394
rluB 23S rRNA pseudouridylate synthasechromosome CDS1328566 876 + 0.537671
rluC 23S rRNA pseudouridylate synthasechromosome CDS1146517 960 + 0.514583
rluD 23S rRNA pseudouridine synthasechromosome CDS2733687 981 - 0.528033
rmf ribosome modulation factorchromosome CDS1016137 168 + 0.541667
rna ribonuclease Ichromosome CDS643420 807 - 0.511772
rnd ribonuclease Dchromosome CDS1888578 1128 - 0.54078
rne fused ribonucleaseE endoribonuclease and scaffold for formation of degradosomechromosome CDS1142759 3186 - 0.556497
rng ribonuclease Gchromosome CDS3396181 1470 - 0.521088
rnpA protein C5 component of RNase Pchromosome CDS3755563 360 - 0.558333
rph chromosome pseudo3823866 687 + 0.561863
rplA 50S ribosomal subunit protein L1chromosome CDS3457098 705 - 0.516312
rplB 50S ribosomal subunit protein L2chromosome CDS4189052 822 + 0.526764
rplC 50S ribosomal subunit protein L3chromosome CDS4187490 630 + 0.514286
rplD 50S ribosomal subunit protein L4chromosome CDS4188130 606 + 0.529703
rplE 50S ribosomal subunit protein L5chromosome CDS4192978 540 + 0.498148
rplF 50S ribosomal subunit protein L6chromosome CDS4194276 534 + 0.520599
rplI 50S ribosomal subunit protein L9chromosome CDS4430788 450 + 0.497778
rplJ 50S ribosomal subunit protein L10chromosome CDS3456188 498 - 0.524096
rplK 50S ribosomal subunit protein L11chromosome CDS3457806 429 - 0.522144
rplL 50S ribosomal subunit protein L7/L12chromosome CDS3455756 366 - 0.461749
rplM 50S ribosomal subunit protein L13chromosome CDS3378078 429 - 0.505827
rplN 50S ribosomal subunit protein L14chromosome CDS4192267 372 + 0.510753
rplO 50S ribosomal subunit protein L15chromosome CDS4195877 435 + 0.535632
rplP 50S ribosomal subunit protein L16chromosome CDS4191247 411 + 0.518248
rplQ 50S ribosomal subunit protein L17chromosome CDS4200417 384 + 0.536458
rplR 50S ribosomal subunit protein L18chromosome CDS4194819 354 + 0.536723
rplS 50S ribosomal subunit protein L19chromosome CDS2742839 348 - 0.482759
rplT 50S ribosomal subunit protein L20chromosome CDS1801107 357 - 0.481793
rplU 50S ribosomal subunit protein L21chromosome CDS3332995 312 - 0.483974
rplV 50S ribosomal subunit protein L22chromosome CDS4190183 333 + 0.498498
rplW 50S ribosomal subunit protein L23chromosome CDS4188732 303 + 0.481848
rplX 50S ribosomal subunit protein L24chromosome CDS4192649 315 + 0.460317
rplY 50S ribosomal subunit protein L25chromosome CDS2285851 285 + 0.505263
rpmA 50S ribosomal subunit protein L27chromosome CDS3332717 258 - 0.5
rpmB 50S ribosomal subunit protein L28chromosome CDS3828741 237 + 0.531646
rpmC 50S ribosomal subunit protein L29chromosome CDS4191657 192 + 0.541667
rpmD 50S ribosomal subunit protein L30chromosome CDS4195694 180 + 0.5
rpmE 50S ribosomal subunit protein L31chromosome CDS3509456 213 - 0.492958
rpmF 50S ribosomal subunit protein L32chromosome CDS1148944 174 + 0.54023
rpmG 50S ribosomal subunit protein L33chromosome CDS3828998 168 + 0.404762
rpmH 50S ribosomal subunit protein L34chromosome CDS3755939 141 - 0.51773
rpmI 50S ribosomal subunit protein L35chromosome CDS1801516 198 - 0.5
rpmJ 50S ribosomal subunit protein L36chromosome CDS4197682 117 + 0.478632
rpsA 30S ribosomal subunit protein S1chromosome CDS962417 1674 + 0.511947
rpsB 30S ribosomal subunit protein S2chromosome CDS189874 726 + 0.513774
rpsC 30S ribosomal subunit protein S3chromosome CDS4190533 702 + 0.509971
rpsD 30S ribosomal subunit protein S4chromosome CDS4198741 621 + 0.507246
rpsE 30S ribosomal subunit protein S5chromosome CDS4195187 504 + 0.501984
rpsF 30S ribosomal subunit protein S6chromosome CDS4429798 396 + 0.525253
rpsG 30S ribosomal subunit protein S7chromosome CDS4166335 540 + 0.501852
rpsH 30S ribosomal subunit protein S8chromosome CDS4193871 393 + 0.501272
rpsI 30S ribosomal subunit protein S9chromosome CDS3377670 393 - 0.524173
rpsJ 30S ribosomal subunit protein S10chromosome CDS4187146 312 + 0.554487
rpsK 30S ribosomal subunit protein S11chromosome CDS4198318 390 + 0.515385
rpsL 30S ribosomal subunit protein S12chromosome CDS4165864 375 + 0.533333
rpsM 30S ribosomal subunit protein S13chromosome CDS4197945 357 + 0.518207
rpsN 30S ribosomal subunit protein S14chromosome CDS4193532 306 + 0.526144
rpsO 30S ribosomal subunit protein S15chromosome CDS3311270 270 - 0.518519
rpsP 30S ribosomal subunit protein S16chromosome CDS2744593 249 - 0.514056
rpsQ 30S ribosomal subunit protein S17chromosome CDS4191848 255 + 0.47451
rpsR 30S ribosomal subunit protein S18chromosome CDS4430519 228 + 0.526316
rpsS 30S ribosomal subunit protein S19chromosome CDS4189890 279 + 0.487455
rpsT 30S ribosomal subunit protein S20chromosome CDS20815 264 - 0.465909
rpsU 30S ribosomal subunit protein S21chromosome CDS3209437 216 + 0.518519
rrmJ 23S rRNA methyltransferasechromosome CDS3326890 630 - 0.504762
rsmB 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependentchromosome CDS4203920 1290 - 0.496899
rsmC 16S RNA m2G1207 methylasechromosome CDS4611349 1032 - 0.557171
rsuA 16S rRNA pseudouridylate 516 synthasechromosome CDS2283122 696 - 0.528736
rumA 23S rRNA (uracil-5)-methyltransferasechromosome CDS2912355 1302 - 0.514593
rumB 23S rRNA m(5)U747 methyltransferasechromosome CDS898940 1128 + 0.546099
selB selenocysteinyl-tRNA-specific translation factorchromosome CDS3880554 1845 + 0.563686
serS seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with serinechromosome CDS939850 1293 + 0.526682
smpA small membrane lipoproteinchromosome CDS2752261 342 + 0.494152
speG spermidine N1-acetyltransferasechromosome CDS1657898 561 + 0.468806
srmB ATP-dependent RNA helicasechromosome CDS2711552 1335 + 0.547566
tadA tRNA-specific adenosine deaminasechromosome CDS2696010 537 - 0.541899
tdcF predicted L-PSP (mRNA) endoribonucleasechromosome CDS3258377 390 - 0.525641
tgt tRNA-guanine transglycosylasechromosome CDS425361 1128 + 0.513298
thrS threonyl-tRNA synthetasechromosome CDS1802356 1929 - 0.495594
trmA tRNA (uracil-5-)-methyltransferasechromosome CDS3473411 1101 + 0.508629
trmD tRNA (guanine-1-)-methyltransferasechromosome CDS2743228 768 - 0.533854
trmH tRNA (Guanosine-2'-O-)-methyltransferasechromosome CDS3815211 690 - 0.553623
trmU tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS1194244 1107 - 0.537489
trpS tryptophanyl-tRNA synthetasechromosome CDS4126778 1005 + 0.520398
truA pseudouridylate synthase Ichromosome CDS2440270 813 - 0.553506
truB tRNA pseudouridine synthasechromosome CDS3311688 945 - 0.524868
tsf protein chain elongation factor EF-Tschromosome CDS190857 852 + 0.498826
tufA protein chain elongation factor EF-Tuchromosome CDS4169087 1185 + 0.532489
tufB protein chain elongation factor EF-Tuchromosome CDS3459553 1185 - 0.534177
tyrS tyrosyl-tRNA synthetasechromosome CDS1717662 1275 - 0.515294
valS valyl-tRNA synthetasechromosome CDS4485662 2856 - 0.545868
yadB glutamyl-Q tRNA(Asp) synthetasechromosome CDS159186 927 - 0.536138
yaeJ conserved hypothetical proteinchromosome CDS214833 423 + 0.541371
yaiF hypothetical proteinchromosome CDS381728 387 - 0.45478
ybfP hypothetical proteinchromosome CDS715834 495 + 0.454545
ycdK conserved hypothetical proteinchromosome CDS1072195 387 - 0.540052
ychF predicted GTP-binding proteinchromosome CDS1258298 1092 - 0.510073
yciH conserved hypothetical proteinchromosome CDS1344372 327 + 0.498471
yciO conserved hypothetical proteinchromosome CDS1325812 621 + 0.481481
yebU predicted methyltransferasechromosome CDS1921937 1440 + 0.518056
yeiP predicted elongtion factorchromosome CDS2268784 573 + 0.499127
yfbG fused UDP-L-Ara4N formyltransferase and UDP-GlcA C-4'-decarboxylasechromosome CDS2372709 1983 + 0.511346
yfhQ predicted methyltransferasechromosome CDS2661239 741 - 0.554656
yfiA cold shock protein associated with 30S ribosomal subunitchromosome CDS2735810 342 + 0.461988
yfiF predicted methyltransferasechromosome CDS2716147 1038 - 0.56262
ygjO predicted methyltransferase small domainchromosome CDS3233395 1137 - 0.538259
yhbH predicted ribosome-associated, sigma 54 modulation proteinchromosome CDS3346028 288 + 0.447917
yhbY predicted RNA-binding proteinchromosome CDS3327645 294 + 0.486395
yibK predicted rRNA methylasechromosome CDS3858727 474 - 0.550633
yjbC 23S rRNA pseudouridine synthasechromosome CDS4233944 873 + 0.515464
yjbN tRNA-dihydrouridine synthase Achromosome CDS4265259 1038 + 0.536609
yjeJ hypothetical proteinchromosome CDS4378045 870 - 0.451724
yjgF ketoacid-binding proteinchromosome CDS4475207 387 - 0.529716
yjgH predicted mRNA endoribonucleasechromosome CDS4477494 396 - 0.472222
yjtD predicted rRNA methyltransferasechromosome CDS4645622 687 + 0.497817
ykgM predicted ribosomal proteinchromosome CDS311598 141 - 0.41844
ykgM predicted ribosomal proteinchromosome CDS311738 264 - 0.458333
yliG predicted SAM-dependent methyltransferasechromosome CDS877132 1326 - 0.526395
ymfC 23S rRNA pseudouridine synthasechromosome CDS1195875 654 - 0.512232
ymjA hypothetical proteinchromosome CDS1359137 246 - 0.48374
yoaB conserved hypothetical proteinchromosome CDS1895081 345 + 0.515942
yqcB tRNA pseudouridine synthasechromosome CDS2921658 783 - 0.54023
yrdC dsRNA-binding proteinchromosome CDS4209001 573 + 0.521815