Gene list
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COG category: Translation, ribosomal structure and biogenesis
Organism: Xanthomonas campestris pv. vesicatoria, 85-10
Number of genes found: 189
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| Xanthomonas campestris pv. vesicatoria, 85-10 | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | XCV0983 | GTP-binding protein | RecName: Full=Ribosome-binding ATPase YchF; | chromosome | CDS | 1113307 | 1092 | + | 0.628205 |
| NA | XCV4388 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 5051869 | 495 | - | 0.668687 |
| NA | XCV2581 | tRNA/rRNA methyltransferase | SubName: Full=tRNA/rRNA methyltransferase; | chromosome | CDS | 2909434 | 765 | - | 0.688889 |
| NA | XCV4177 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4790433 | 204 | + | 0.495098 |
| NA | XCV1421 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1599902 | 603 | + | 0.645108 |
| NA | XCV2684 | large Ala/Gln-rich protein | SubName: Full=Large Ala/Gln-rich protein; | chromosome | CDS | 3038955 | 3873 | - | 0.62613 |
| NA | XCV0219 | putative membrane protein | SubName: Full=Putative membrane protein; | chromosome | CDS | 257942 | 600 | + | 0.555 |
| NA | XCV2199 | putative cytidine / deoxycytidylate deaminase family protein | RecName: Full=tRNA-specific adenosine deaminase; EC=3.5.4.33; | chromosome | CDS | 2528779 | 510 | + | 0.662745 |
| NA | XCV1763 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1983797 | 306 | - | 0.620915 |
| NA | XCV4367 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 5023762 | 399 | - | 0.619048 |
| NA | XCVd0155 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | pXCV183 | CDS | 160051 | 5259 | - | 0.609622 |
| NA | XCV3435 | acetyltransferase | SubName: Full=Acetyltransferase; | chromosome | CDS | 3926653 | 570 | - | 0.650877 |
| NA | XCV0932 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1060652 | 249 | + | 0.658635 |
| NA | XCV1030 | putative secreted peptide amidase | SubName: Full=Putative secreted peptide amidase; Flags: Precursor; | chromosome | CDS | 1156361 | 1665 | - | 0.679279 |
| NA | XCV1395 | mRNA 3'-end processing factor | SubName: Full=mRNA 3-end processing factor; | chromosome | CDS | 1575813 | 1023 | - | 0.664712 |
| NA | XCV3976 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4565981 | 198 | - | 0.626263 |
| NA | XCV2878 | putative HemK-family S-adenosyl-methionine-dependent methyltransferase | RecName: Full=50S ribosomal protein L3 glutamine methyltransferase; Short=L3 MTase; EC=2.1.1.298; AltName: Full=N5-glutamine methyltransferase PrmB; | chromosome | CDS | 3271611 | 927 | - | 0.656958 |
| NA | XCV4040 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4641278 | 612 | - | 0.620915 |
| NA | XCV3539 | putative endoribonuclease L-PSP | SubName: Full=Putative endoribonuclease L-PSP; | chromosome | CDS | 4054126 | 504 | - | 0.619048 |
| NA | XCV4382 | putative acetyltransferase | SubName: Full=Putative acetyltransferase; | chromosome | CDS | 5044843 | 714 | - | 0.673669 |
| NA | XCV3434 | tRNA/rRNA methyltransferase | SubName: Full=tRNA/rRNA methyltransferase; Flags: Precursor; | chromosome | CDS | 3925445 | 1173 | - | 0.688832 |
| NA | XCV1185 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1325080 | 1665 | + | 0.627027 |
| NA | XCV0963 | asparaginase | SubName: Full=Asparaginase; EC=3.5.1.1; | chromosome | CDS | 1094640 | 486 | - | 0.592593 |
| NA | XCV1427 | putative endoribonuclease L-PSP | SubName: Full=Putative endoribonuclease L-PSP; | chromosome | CDS | 1606681 | 348 | + | 0.652299 |
| NA | XCV2267 | putative adenine-specific DNA methyltransferase | SubName: Full=Putative adenine-specific DNA methyltransferase; | chromosome | CDS | 2597873 | 1110 | - | 0.638739 |
| NA | XCV0252 | putative peptidyl-tRNA hydrolase | SubName: Full=Putative peptidyl-tRNA hydrolase; | chromosome | CDS | 292878 | 312 | + | 0.695513 |
| NA | XCV0332 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 379969 | 393 | + | 0.669211 |
| NA | XCV1609 | tRNA/rRNA methyltransferase | RecName: Full=23S rRNA (guanosine-2-O-)-methyltransferase RlmB; EC=2.1.1.185; AltName: Full=23S rRNA (guanosine2251 2-O)-methyltransferase; AltName: Full=23S rRNA Gm2251 2-O-methyltransferase; | chromosome | CDS | 1820321 | 750 | + | 0.673333 |
| NA | XCV1159 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1289614 | 558 | + | 0.621864 |
| NA | XCVd0053 | hypothetical protein | SubName: Full=Uncharacterized protein; | pXCV183 | CDS | 61211 | 960 | + | 0.619792 |
| NA | XCV0925 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1054951 | 561 | - | 0.680927 |
| NA | XCV0694 | putative cytosine deaminase | SubName: Full=Putative cytosine deaminase; | chromosome | CDS | 787867 | 456 | - | 0.631579 |
| NA | XCV2389 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2717269 | 1110 | - | 0.654054 |
| NA | XCV4422 | putative pseudouridylate synthase | RecName: Full=Pseudouridine synthase; EC=5.4.99.-; | chromosome | CDS | 5098593 | 891 | - | 0.670034 |
| NA | XCV0236 | tRNA/rRNA methyltransferase, SpoU class; TrmH family | RecName: Full=tRNA (cytidine(34)-2-O)-methyltransferase; EC=2.1.1.207; AltName: Full=tRNA (cytidine/uridine-2-O-)-methyltransferase TrmL; | chromosome | CDS | 277539 | 477 | - | 0.637317 |
| NA | XCV3162 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3583485 | 255 | + | 0.65098 |
| NA | XCV3100 | putative nucleotidyltransferase | SubName: Full=Putative nucleotidyltransferase; | chromosome | CDS | 3521421 | 714 | + | 0.64986 |
| NA | XCV3119 | sigma-54 modulation protein | SubName: Full=Sigma-54 modulation protein; | chromosome | CDS | 3536793 | 270 | + | 0.633333 |
| NA | XCV0868 | putative TIM-barrel protein; NifR3 family | RecName: Full=tRNA-dihydrouridine synthase; EC=1.-.-.-; | chromosome | CDS | 996846 | 999 | - | 0.664665 |
| NA | XCV2887 | MiaB-family RNA modification enzyme | RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; EC=2.-.-.-; AltName: Full=Ribosome maturation factor RimO; | chromosome | CDS | 3282591 | 1377 | - | 0.633987 |
| NA | XCV3881 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4468535 | 402 | + | 0.669154 |
| alaS | XCV1775 | Alanyl-tRNA synthetase | RecName: Full=Alanine--tRNA ligase; EC=6.1.1.7; AltName: Full=Alanyl-tRNA synthetase; Short=AlaRS; | chromosome | CDS | 1996385 | 2649 | + | 0.646282 |
| argA | XCV2546 | amino-acid acetyltransferase | SubName: Full=Amino-acid acetyltransferase; | chromosome | CDS | 2873835 | 612 | - | 0.661765 |
| argS | XCV4029 | arginyl-tRNA synthetase | RecName: Full=Arginine--tRNA ligase; EC=6.1.1.19; AltName: Full=Arginyl-tRNA synthetase; Short=ArgRS; | chromosome | CDS | 4626133 | 1710 | + | 0.659649 |
| asnS | XCV1659 | asparaginyl-tRNA synthetase | RecName: Full=Asparagine--tRNA ligase; EC=6.1.1.22; AltName: Full=Asparaginyl-tRNA synthetase; Short=AsnRS; | chromosome | CDS | 1867132 | 1395 | - | 0.62724 |
| aspS | XCV3286 | aspartyl-tRNA synthetase | RecName: Full=Aspartate--tRNA ligase; EC=6.1.1.12; AltName: Full=Aspartyl-tRNA synthetase; Short=AspRS; | chromosome | CDS | 3751279 | 1767 | - | 0.660441 |
| cca | XCV0773 | tRNA nucleotidyltransferase | RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; EC=2.7.7.72; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2-nucleotidase; EC=3.1.3.-; Includes: RecName: Full=2,3-cyclic phosphodiesterase; EC=3.1.4.-; Includes: RecName: Full=Phosphatase; EC=3.1.3.-; | chromosome | CDS | 883052 | 1233 | - | 0.662612 |
| cysS | XCV2553 | cysteinyl-tRNA synthetase | RecName: Full=Cysteine--tRNA ligase; EC=6.1.1.16; AltName: Full=Cysteinyl-tRNA synthetase; Short=CysRS; | chromosome | CDS | 2880939 | 1431 | + | 0.657582 |
| dbpA | XCV2587 | ATP-dependent RNA helicase | SubName: Full=ATP-dependent RNA helicase; | chromosome | CDS | 2915525 | 1377 | + | 0.668119 |
| deaD | XCV2974 | ATP-dependent RNA helicase | RecName: Full=ATP-dependent RNA helicase DeaD; EC=3.6.4.13; AltName: Full=Cold-shock DEAD box protein A; | chromosome | CDS | 3383466 | 1947 | - | 0.681048 |
| def1 | XCV3636 | peptide deformylase | RecName: Full=Peptide deformylase; Short=PDF; EC=3.5.1.88; AltName: Full=Polypeptide deformylase; | chromosome | CDS | 4182922 | 516 | - | 0.612403 |
| def2 | XCV3926 | peptide deformylase | RecName: Full=Peptide deformylase; Short=PDF; EC=3.5.1.88; AltName: Full=Polypeptide deformylase; | chromosome | CDS | 4506857 | 513 | - | 0.619883 |
| dtd | XCV3913 | D-tyrosyl-tRNA(Tyr) deacylase | RecName: Full=D-tyrosyl-tRNA(Tyr) deacylase; EC=3.1.-.-; | chromosome | CDS | 4492883 | 441 | - | 0.666667 |
| dusA | XCV4118 | putative dihydrouridine synthase | RecName: Full=tRNA-dihydrouridine synthase; EC=1.-.-.-; | chromosome | CDS | 4713413 | 1005 | - | 0.683582 |
| efP1 | XCV1895 | Elongation factor P | RecName: Full=Elongation factor P-like protein; | chromosome | CDS | 2142892 | 567 | - | 0.61552 |
| efP2 | XCV2577 | Elongation factor P | RecName: Full=Elongation factor P; Short=EF-P; | chromosome | CDS | 2904542 | 567 | - | 0.626102 |
| fmt | XCV3925 | methionyl-tRNA formyltransferase | RecName: Full=Methionyl-tRNA formyltransferase; EC=2.1.2.9; | chromosome | CDS | 4505553 | 924 | - | 0.709957 |
| frr | XCV1475 | ribosome recycling factor | RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor; | chromosome | CDS | 1657733 | 558 | - | 0.614695 |
| ftsJ | XCV1764 | cell division protein FtsJ | RecName: Full=Ribosomal RNA large subunit methyltransferase E; EC=2.1.1.166; AltName: Full=23S rRNA Um2552 methyltransferase; AltName: Full=rRNA (uridine-2-O-)-methyltransferase; | chromosome | CDS | 1984168 | 633 | + | 0.638231 |
| fusA | XCV0995 | elongation factor G | RecName: Full=Elongation factor G; Short=EF-G; | chromosome | CDS | 1130091 | 2118 | + | 0.618508 |
| gatA | XCV0315 | glu-tRNAGln amidotransferase A subunit | SubName: Full=Glu-tRNAGln amidotransferase A subunit; | chromosome | CDS | 359853 | 1461 | - | 0.720739 |
| gcn3 | XCV1671 | initiation factor eIF-2B | RecName: Full=Methylthioribose-1-phosphate isomerase; Short=M1Pi; Short=MTR-1-P isomerase; EC=5.3.1.23; AltName: Full=S-methyl-5-thioribose-1-phosphate isomerase; | chromosome | CDS | 1881775 | 1065 | + | 0.690141 |
| glnS | XCV0930 | glutaminyl-tRNA synthetase | RecName: Full=Glutamine--tRNA ligase; EC=6.1.1.18; AltName: Full=Glutaminyl-tRNA synthetase; Short=GlnRS; | chromosome | CDS | 1057871 | 1740 | - | 0.645977 |
| gluS | XCV3007 | glutamyl-tRNA synthetase | RecName: Full=Glutamate--tRNA ligase; EC=6.1.1.17; AltName: Full=Glutamyl-tRNA synthetase; Short=GluRS; | chromosome | CDS | 3420015 | 1404 | - | 0.651709 |
| glyQ | XCV4311 | glycyl-tRNA synthetase alpha chain | RecName: Full=Glycine--tRNA ligase alpha subunit; EC=6.1.1.14; AltName: Full=Glycyl-tRNA synthetase alpha subunit; Short=GlyRS; | chromosome | CDS | 4954336 | 909 | - | 0.644664 |
| glyS | XCV4310 | glycyl-tRNA synthetase beta chain | SubName: Full=Glycyl-tRNA synthetase beta chain; EC=6.1.1.14; | chromosome | CDS | 4951778 | 2241 | - | 0.655065 |
| gshB | XCV3234 | glutathione synthetase | RecName: Full=Glutathione synthetase; EC=6.3.2.3; AltName: Full=GSH synthetase; AltName: Full=Glutathione synthase; | chromosome | CDS | 3691418 | 951 | + | 0.68244 |
| hemK | XCV0944 | protein methyltransferase HemK | RecName: Full=Release factor glutamine methyltransferase; Short=RF MTase; EC=2.1.1.297; AltName: Full=N5-glutamine methyltransferase PrmC; AltName: Full=Protein-(glutamine-N5) MTase PrmC; AltName: Full=Protein-glutamine N-methyltransferase PrmC; | chromosome | CDS | 1072334 | 861 | + | 0.708479 |
| hisS | XCV1872 | histidyl-tRNA synthetase | RecName: Full=Histidine--tRNA ligase; EC=6.1.1.21; AltName: Full=Histidyl-tRNA synthetase; Short=HisRS; | chromosome | CDS | 2118705 | 1449 | + | 0.648033 |
| hslR | XCV1349 | heat shock protein 15 homolog | SubName: Full=Heat shock protein 15 homolog; | chromosome | CDS | 1514185 | 408 | + | 0.666667 |
| ileS | XCV1290 | isoleucyl-tRNA synthetase | RecName: Full=Isoleucine--tRNA ligase; EC=6.1.1.5; AltName: Full=Isoleucyl-tRNA synthetase; Short=IleRS; | chromosome | CDS | 1446526 | 2832 | + | 0.664195 |
| infA | XCV2051 | initiation factor IF-1 | RecName: Full=Translation initiation factor IF-1; | chromosome | CDS | 2335005 | 219 | - | 0.543379 |
| infB | XCV2837 | protein chain initiation factor IF-2 | RecName: Full=Translation initiation factor IF-2; | chromosome | CDS | 3226452 | 2715 | - | 0.649724 |
| infC | XCV2794 | Initiation factor IF-3 | RecName: Full=Translation initiation factor IF-3; | chromosome | CDS | 3173989 | 480 | - | 0.608333 |
| ksgA | XCV0900 | Dimethyladenosine transferase | RecName: Full=Ribosomal RNA small subunit methyltransferase A; EC=2.1.1.182; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N, N-adenosyl(rRNA) dimethyltransferase; | chromosome | CDS | 1028290 | 789 | - | 0.66033 |
| leuS | XCV2938 | leucyl-tRNA synthetase | RecName: Full=Leucine--tRNA ligase; EC=6.1.1.4; AltName: Full=Leucyl-tRNA synthetase; Short=LeuRS; | chromosome | CDS | 3339919 | 2799 | - | 0.660236 |
| lysS | XCV1669 | lysyl-tRNA synthetase | SubName: Full=Lysyl-tRNA synthetase; EC=6.1.1.6; | chromosome | CDS | 1879819 | 963 | + | 0.660436 |
| lysU | XCV1916 | lysyl-tRNA synthetase heat inducible | RecName: Full=Lysine--tRNA ligase; EC=6.1.1.6; AltName: Full=Lysyl-tRNA synthetase; Short=LysRS; | chromosome | CDS | 2165335 | 1518 | + | 0.656126 |
| map | XCV1485 | methionine aminopeptidase | RecName: Full=Methionine aminopeptidase; Short=MAP; Short=MetAP; EC=3.4.11.18; AltName: Full=Peptidase M; | chromosome | CDS | 1669473 | 777 | + | 0.622909 |
| map | XCV3894 | methionine aminopeptidase | RecName: Full=Methionine aminopeptidase; Short=MAP; Short=MetAP; EC=3.4.11.18; AltName: Full=Peptidase M; | chromosome | CDS | 4479319 | 747 | - | 0.627845 |
| miaA | XCV1767 | tRNA isopentenyltransferase | RecName: Full=tRNA dimethylallyltransferase; EC=2.5.1.75; AltName: Full=Dimethylallyl diphosphate:tRNA dimethylallyltransferase; Short=DMAPP:tRNA dimethylallyltransferase; Short=DMATase; AltName: Full=Isopentenyl-diphosphate:tRNA isopentenyltransferase; Short=IPP transferase; Short=IPPT; Short=IPTase; | chromosome | CDS | 1987830 | 984 | + | 0.686992 |
| miaB | XCV2638 | 2-methylthioadenine synthetase | RecName: Full=tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; EC=2.8.4.3; AltName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase; | chromosome | CDS | 2973447 | 1455 | + | 0.643986 |
| pcnB | XCV1814 | Polynucleotide adenylyltransferase | RecName: Full=Poly(A) polymerase I; Short=PAP I; EC=2.7.7.19; | chromosome | CDS | 2046920 | 1368 | + | 0.649123 |
| pheS | XCV2791 | phenylalanyl-tRNA synthetase alpha chain | RecName: Full=Phenylalanine--tRNA ligase alpha subunit; EC=6.1.1.20; AltName: Full=Phenylalanyl-tRNA synthetase alpha subunit; Short=PheRS; | chromosome | CDS | 3171926 | 996 | - | 0.645582 |
| pnp | XCV2833 | polynucleotide phosphorylase | RecName: Full=Polyribonucleotide nucleotidyltransferase; EC=2.7.7.8; AltName: Full=Polynucleotide phosphorylase; Short=PNPase; | chromosome | CDS | 3222209 | 2115 | - | 0.629314 |
| prfA | XCV0975 | peptide chain release factor 1 | RecName: Full=Peptide chain release factor 1; Short=RF-1; | chromosome | CDS | 1105013 | 1086 | - | 0.651934 |
| prfB | XCV1915 | peptide chain release factor 2 | RecName: Full=Peptide chain release factor 2; Short=RF-2; | chromosome | CDS | 2164007 | 1125 | + | 0.628444 |
| prfC | XCV3179 | peptide chain release factor 3 | RecName: Full=Peptide chain release factor 3; Short=RF-3; | chromosome | CDS | 3611695 | 1605 | + | 0.624922 |
| prmA | XCV0560 | ribosomal protein L11 methyltransferase | RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11 Mtase; EC=2.1.1.-; | chromosome | CDS | 627412 | 921 | - | 0.684039 |
| proS | XCV3692 | prolyl-tRNA synthetase | RecName: Full=Proline--tRNA ligase; EC=6.1.1.15; AltName: Full=Prolyl-tRNA synthetase; Short=ProRS; | chromosome | CDS | 4265693 | 1866 | + | 0.664523 |
| pth | XCV0982 | peptidyl tRNA hydrolase | RecName: Full=Peptidyl-tRNA hydrolase; Short=PTH; EC=3.1.1.29; | chromosome | CDS | 1112648 | 582 | + | 0.639175 |
| queA | XCV2696 | S-adenosylmethionine:tRNAribosyltransferase-isom erase | RecName: Full=S-adenosylmethionine:tRNA ribosyltransferase-isomerase; EC=2.4.99.17; AltName: Full=Queuosine biosynthesis protein QueA; | chromosome | CDS | 3052881 | 1071 | - | 0.685341 |
| rbfA | XCV2836 | ribosomal-binding factor A | RecName: Full=Ribosome-binding factor A; | chromosome | CDS | 3225915 | 393 | - | 0.651399 |
| rhlB | XCV3954 | ATP-dependent RNA helicase | RecName: Full=ATP-dependent RNA helicase RhlB; EC=3.6.4.13; | chromosome | CDS | 4537342 | 1722 | - | 0.680604 |
| rhlE | XCV3733 | ATP-dependent RNA helicase | SubName: Full=ATP-dependent RNA helicase; | chromosome | CDS | 4314998 | 1389 | + | 0.689705 |
| rhlE | XCV0470 | ATP-dependent RNA helicase | SubName: Full=ATP-dependent RNA helicase; | chromosome | CDS | 531139 | 1362 | - | 0.687959 |
| rimJ | XCV3226 | ribosomal protein alanine N-acetyltransferase | SubName: Full=Ribosomal protein alanine N-acetyltransferase; EC=2.3.1.128; | chromosome | CDS | 3677904 | 624 | - | 0.669872 |
| rimK | XCV3367 | ribosomal protein S6 modification protein | RecName: Full=Probable alpha-L-glutamate ligase; EC=6.3.2.-; | chromosome | CDS | 3854991 | 888 | - | 0.670045 |
| rimM | XCV1343 | 16S rRNA processing protein RimM | RecName: Full=Ribosome maturation factor RimM; | chromosome | CDS | 1508487 | 543 | + | 0.616943 |
| rluB1 | XCV1044 | Pseudouridylate synthase | RecName: Full=Pseudouridine synthase; EC=5.4.99.-; | chromosome | CDS | 1170698 | 861 | + | 0.694541 |
| rluB2 | XCV2517 | Pseudouridylate synthase | RecName: Full=Pseudouridine synthase; EC=5.4.99.-; | chromosome | CDS | 2840789 | 1644 | + | 0.703771 |
| rluC | XCV2424 | pseudouridylate synthase | RecName: Full=Pseudouridine synthase; EC=5.4.99.-; | chromosome | CDS | 2751250 | 987 | + | 0.660588 |
| rluD | XCV3342 | ribosomal large subunit pseudouridine synthase D | RecName: Full=Pseudouridine synthase; EC=5.4.99.-; | chromosome | CDS | 3827016 | 996 | - | 0.703815 |
| rluE | XCV0298 | pseudouridylate synthase | RecName: Full=Pseudouridine synthase; EC=5.4.99.-; | chromosome | CDS | 342900 | 573 | + | 0.685864 |
| rluF | XCV2972 | Pseudouridylate synthase | RecName: Full=Pseudouridine synthase; EC=5.4.99.-; | chromosome | CDS | 3379936 | 762 | - | 0.61811 |
| rnd | XCV2611 | ribonuclease D | RecName: Full=Ribonuclease D; Short=RNase D; EC=3.1.13.5; | chromosome | CDS | 2944366 | 1092 | + | 0.677656 |
| rne | XCV2423 | ribonuclease E | RecName: Full=Ribonuclease E; Short=RNase E; EC=3.1.26.12; | chromosome | CDS | 2747199 | 3651 | - | 0.66968 |
| rng | XCV2927 | ribonuclease G | SubName: Full=Ribonuclease G; | chromosome | CDS | 3330051 | 1500 | - | 0.654667 |
| rnpA | XCV4486 | ribonuclease P, protein component | RecName: Full=Ribonuclease P protein component; Short=RNase P protein; Short=RNaseP protein; EC=3.1.26.5; AltName: Full=Protein C5; | chromosome | CDS | 5177608 | 438 | - | 0.666667 |
| rph | XCV3514 | ribonuclease PH | RecName: Full=Ribonuclease PH; Short=RNase PH; EC=2.7.7.56; AltName: Full=tRNA nucleotidyltransferase; | chromosome | CDS | 4026982 | 726 | + | 0.673554 |
| rplA | XCV0988 | 50S ribosomal protein L1 | RecName: Full=50S ribosomal protein L1; | chromosome | CDS | 1117928 | 699 | + | 0.649499 |
| rplB | XCV1002 | 50S ribosomal protein L2 | RecName: Full=50S ribosomal protein L2; | chromosome | CDS | 1137339 | 828 | + | 0.64372 |
| rplC | XCV0999 | 50S ribosomal protein L3 | RecName: Full=50S ribosomal protein L3; | chromosome | CDS | 1135764 | 651 | + | 0.6298 |
| rplD | XCV1000 | 50S ribosomal protein L4 | RecName: Full=50S ribosomal protein L4; | chromosome | CDS | 1136427 | 606 | + | 0.608911 |
| rplE | XCV1011 | 50S ribosomal protein L5 | RecName: Full=50S ribosomal protein L5; | chromosome | CDS | 1141155 | 543 | + | 0.574586 |
| rplF | XCV1014 | 50S ribosomal protein L6 | RecName: Full=50S ribosomal protein L6; | chromosome | CDS | 1142641 | 528 | + | 0.63447 |
| rplI | XCV1663 | 50S ribosomal protein L9 | RecName: Full=50S ribosomal protein L9; | chromosome | CDS | 1870337 | 450 | + | 0.631111 |
| rplJ | XCV0989 | 50S ribosomal protein L10 | RecName: Full=50S ribosomal protein L10; | chromosome | CDS | 1119169 | 534 | + | 0.638577 |
| rplK | XCV0987 | 50S ribosomal protein L11 | RecName: Full=50S ribosomal protein L11; | chromosome | CDS | 1117496 | 429 | + | 0.615385 |
| rplL | XCV0990 | 50S ribosomal protein L7/L12 | RecName: Full=50S ribosomal protein L7/L12; | chromosome | CDS | 1119757 | 366 | + | 0.598361 |
| rplM | XCV0523 | 50S ribosomal protein L13 | RecName: Full=50S ribosomal protein L13; | chromosome | CDS | 589610 | 429 | + | 0.613054 |
| rplN | XCV1009 | 50S ribosomal protein L14 | RecName: Full=50S ribosomal protein L14; | chromosome | CDS | 1140442 | 369 | + | 0.604336 |
| rplO | XCV1018 | 50S ribosomal protein L15 | RecName: Full=50S ribosomal protein L15; | chromosome | CDS | 1144510 | 444 | + | 0.648649 |
| rplP | XCV1006 | 50S ribosomal protein L16 | RecName: Full=50S ribosomal protein L16; | chromosome | CDS | 1139548 | 414 | + | 0.618357 |
| rplQ | XCV1024 | 50S ribosomal protein L17 | RecName: Full=50S ribosomal protein L17; | chromosome | CDS | 1149292 | 384 | + | 0.651042 |
| rplR | XCV1015 | 50S ribosomal protein L18 | RecName: Full=50S ribosomal protein L18; | chromosome | CDS | 1143260 | 360 | + | 0.636111 |
| rplS | XCV1345 | 50S ribosomal protein L19 | RecName: Full=50S ribosomal protein L19; | chromosome | CDS | 1509999 | 408 | + | 0.620098 |
| rplT | XCV2792 | 50S ribosomal protein L20 | RecName: Full=50S ribosomal protein L20; | chromosome | CDS | 3173175 | 360 | - | 0.608333 |
| rplU | XCV1284 | 50S ribosomal protein L21 | RecName: Full=50S ribosomal protein L21; | chromosome | CDS | 1441303 | 321 | + | 0.607477 |
| rplV | XCV1004 | 50S ribosomal protein L22 | RecName: Full=50S ribosomal protein L22; | chromosome | CDS | 1138455 | 336 | + | 0.604167 |
| rplW | XCV1001 | 50S ribosomal protein L23 | RecName: Full=50S ribosomal protein L23; | chromosome | CDS | 1137029 | 300 | + | 0.566667 |
| rplX | XCV1010 | 50S ribosomal protein L24 | RecName: Full=50S ribosomal protein L24; | chromosome | CDS | 1140826 | 318 | + | 0.613208 |
| rplY | XCV0981 | 50S ribosomal protein L25 | RecName: Full=50S ribosomal protein L25; AltName: Full=General stress protein CTC; | chromosome | CDS | 1111961 | 636 | + | 0.610063 |
| rpmA | XCV1285 | 50S ribosomal protein L27 | RecName: Full=50S ribosomal protein L27; | chromosome | CDS | 1441636 | 261 | + | 0.624521 |
| rpmB | XCV4257 | 50S ribosomal protein L28 | RecName: Full=50S ribosomal protein L28; | chromosome | CDS | 4887138 | 237 | - | 0.599156 |
| rpmC | XCV1007 | 50S ribosomal protein L29 | RecName: Full=50S ribosomal protein L29; | chromosome | CDS | 1139961 | 186 | + | 0.602151 |
| rpmD | XCV1017 | 50S ribosomal protein L30 | RecName: Full=50S ribosomal protein L30; | chromosome | CDS | 1144314 | 192 | + | 0.583333 |
| rpmE | XCV3506 | 50S ribosomal protein L31 | RecName: Full=50S ribosomal protein L31 type B; | chromosome | CDS | 4018381 | 243 | - | 0.539095 |
| rpmF | XCV1142 | 50S ribosomal protein L32 | RecName: Full=50S ribosomal protein L32; | chromosome | CDS | 1271554 | 195 | + | 0.635897 |
| rpmG | XCV4256 | 50S ribosomal protein L33 | RecName: Full=50S ribosomal protein L33; | chromosome | CDS | 4886957 | 168 | - | 0.505952 |
| rpmH | XCV4487 | 50S ribosomal protein L34 | RecName: Full=50S ribosomal protein L34; | chromosome | CDS | 5178084 | 141 | - | 0.652482 |
| rpmI | XCV2793 | 50S ribosomal protein L35 | RecName: Full=50S ribosomal protein L35; | chromosome | CDS | 3173545 | 198 | - | 0.606061 |
| rpmJ | XCV2498 | 50S ribosomal protein L36 | RecName: Full=50S ribosomal protein L36; | chromosome | CDS | 2819350 | 126 | + | 0.603175 |
| rpsA | XCV2496 | 30S ribosomal protein S1 | RecName: Full=30S ribosomal protein S1; | chromosome | CDS | 2816626 | 1686 | - | 0.619217 |
| rpsB | XCV1479 | 30S ribosomal protein S2 | RecName: Full=30S ribosomal protein S2; | chromosome | CDS | 1662155 | 798 | - | 0.632832 |
| rpsC | XCV1005 | 30S ribosomal protein S3 | RecName: Full=30S ribosomal protein S3; | chromosome | CDS | 1138808 | 735 | + | 0.610884 |
| rpsD | XCV1022 | 30S ribosomal protein S4 | RecName: Full=30S ribosomal protein S4; | chromosome | CDS | 1147433 | 627 | + | 0.606061 |
| rpsE | XCV1016 | 30S ribosomal protein S5 | RecName: Full=30S ribosomal protein S5; | chromosome | CDS | 1143779 | 543 | + | 0.624309 |
| rpsF | XCV1661 | 30S ribosomal protein S6 | RecName: Full=30S ribosomal protein S6; | chromosome | CDS | 1869476 | 432 | + | 0.625 |
| rpsG | XCV0994 | 30S ribosomal protein S7 | RecName: Full=30S ribosomal protein S7; | chromosome | CDS | 1129486 | 468 | + | 0.583333 |
| rpsH | XCV1013 | 30S ribosomal protein S8 | RecName: Full=30S ribosomal protein S8; | chromosome | CDS | 1142227 | 399 | + | 0.588972 |
| rpsI | XCV0524 | 30S ribosomal protein S9 | RecName: Full=30S ribosomal protein S9; | chromosome | CDS | 590041 | 393 | + | 0.631043 |
| rpsJ | XCV0998 | 30S ribosomal protein S10 | RecName: Full=30S ribosomal protein S10; | chromosome | CDS | 1135417 | 336 | + | 0.583333 |
| rpsK | XCV1021 | 30S ribosomal protein S11 | RecName: Full=30S ribosomal protein S11; | chromosome | CDS | 1147025 | 393 | + | 0.620865 |
| rpsL | XCV0993 | 30S ribosomal protein S12 | RecName: Full=30S ribosomal protein S12; | chromosome | CDS | 1129099 | 375 | + | 0.624 |
| rpsM | XCV1020 | 30S ribosomal protein S13 | RecName: Full=30S ribosomal protein S13; | chromosome | CDS | 1146658 | 357 | + | 0.621849 |
| rpsN | XCV1012 | 30S ribosomal protein S14 | RecName: Full=30S ribosomal protein S14; | chromosome | CDS | 1141716 | 306 | + | 0.601307 |
| rpsO | XCV2834 | 30S ribosomal protein S15 | RecName: Full=30S ribosomal protein S15; | chromosome | CDS | 3224492 | 261 | - | 0.582375 |
| rpsP | XCV1342 | 30S ribosomal protein S16 | RecName: Full=30S ribosomal protein S16; | chromosome | CDS | 1508216 | 258 | + | 0.658915 |
| rpsQ | XCV1008 | 30S ribosomal protein S17 | RecName: Full=30S ribosomal protein S17; | chromosome | CDS | 1140158 | 270 | + | 0.577778 |
| rpsR | XCV1662 | 30S ribosomal protein S18 | RecName: Full=30S ribosomal protein S18; | chromosome | CDS | 1869919 | 231 | + | 0.588745 |
| rpsS | XCV1003 | 30S ribosomal protein S19 | RecName: Full=30S ribosomal protein S19; | chromosome | CDS | 1138173 | 270 | + | 0.57037 |
| rpsT | XCV1287 | 30S ribosomal protein S20 | RecName: Full=30S ribosomal protein S20; | chromosome | CDS | 1443302 | 270 | - | 0.625926 |
| rpsU | XCV3991 | 30S ribosomal protein S21 | RecName: Full=30S ribosomal protein S21; | chromosome | CDS | 4580742 | 216 | + | 0.615741 |
| rsmB | XCV3924 | ribosomal RNA small subunit methyltransferase B | SubName: Full=Ribosomal RNA small subunit methyltransferase B; | chromosome | CDS | 4504243 | 1311 | - | 0.693364 |
| rsmC | XCV3800 | ribosomal RNA small subunit methyltransferase C | SubName: Full=Ribosomal RNA small subunit methyltransferase C; | chromosome | CDS | 4384802 | 1179 | - | 0.682782 |
| rsuA1 | XCV3259 | ribosomal small subunit pseudouridylate synthase | SubName: Full=Ribosomal small subunit pseudouridylate synthase; EC=4.2.1.70; | chromosome | CDS | 3727646 | 711 | - | 0.658228 |
| rsuA2 | XCV3799 | ribosomal small subunit pseudouridylate synthase | SubName: Full=Ribosomal small subunit pseudouridylate synthase; EC=4.2.1.70; | chromosome | CDS | 4384092 | 714 | - | 0.662465 |
| rumA | XCV1381 | RNA methyltransferase | RecName: Full=23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD; EC=2.1.1.190; AltName: Full=23S rRNA(m5U1939)-methyltransferase; | chromosome | CDS | 1560963 | 1434 | + | 0.658298 |
| serS | XCV1694 | seryl-tRNA synthetase | RecName: Full=Serine--tRNA ligase; EC=6.1.1.11; AltName: Full=Seryl-tRNA synthetase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec) synthetase; | chromosome | CDS | 1908954 | 1281 | + | 0.633099 |
| smpA | XCV1559 | putative outer membrane protein | RecName: Full=Outer membrane protein assembly factor BamE; Flags: Precursor; | chromosome | CDS | 1757757 | 396 | - | 0.608586 |
| strA | XCV2326 | Streptomycin 3''-kinase | SubName: Full=Streptomycin 3-kinase; EC=2.7.1.87; | chromosome | CDS | 2657417 | 804 | - | 0.562189 |
| tgt | XCV2695 | queuine tRNA-ribosyltransferase | RecName: Full=Queuine tRNA-ribosyltransferase; EC=2.4.2.29; AltName: Full=Guanine insertion enzyme; AltName: Full=tRNA-guanine transglycosylase; | chromosome | CDS | 3051654 | 1146 | - | 0.666667 |
| thrS | XCV2795 | threonyl-tRNA synthetase | RecName: Full=Threonine--tRNA ligase; EC=6.1.1.3; AltName: Full=Threonyl-tRNA synthetase; Short=ThrRS; | chromosome | CDS | 3174580 | 1905 | - | 0.638845 |
| tniB | XCV2342 | Transposition protein TniB | SubName: Full=Transposition protein TniB; | chromosome | CDS | 2673250 | 909 | - | 0.644664 |
| trmD | XCV1344 | tRNA (guanine-N(1)-)-methyltransferase | RecName: Full=tRNA (guanine-N(1)-)-methyltransferase; EC=2.1.1.228; AltName: Full=M1G-methyltransferase; AltName: Full=tRNA [GM37] methyltransferase; | chromosome | CDS | 1509095 | 759 | + | 0.657444 |
| trmU | XCV2046 | tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase. | RecName: Full=tRNA-specific 2-thiouridylase MnmA; EC=2.8.1.-; | chromosome | CDS | 2330137 | 1137 | - | 0.669305 |
| trpS | XCV4098 | tryptophanyl-tRNA synthetase | RecName: Full=Tryptophan--tRNA ligase; EC=6.1.1.2; AltName: Full=Tryptophanyl-tRNA synthetase; | chromosome | CDS | 4695782 | 1290 | - | 0.629457 |
| truA | XCV2872 | tRNA pseudouridine synthase A | RecName: Full=tRNA pseudouridine synthase A; EC=5.4.99.12; AltName: Full=tRNA pseudouridine(38-40) synthase; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I; | chromosome | CDS | 3264343 | 774 | - | 0.666667 |
| truB | XCV2835 | tRNA pseudouridine synthase B | RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.25; AltName: Full=tRNA pseudouridine(55) synthase; Short=Psi55 synthase; AltName: Full=tRNA pseudouridylate synthase; AltName: Full=tRNA-uridine isomerase; | chromosome | CDS | 3224909 | 927 | - | 0.660194 |
| truC | XCV0250 | Pseudouridylate synthase | RecName: Full=Pseudouridine synthase; EC=5.4.99.-; | chromosome | CDS | 291231 | 717 | + | 0.655509 |
| tsf | XCV1478 | elongation factor Ts | RecName: Full=Elongation factor Ts; Short=EF-Ts; | chromosome | CDS | 1661107 | 879 | - | 0.637088 |
| tufA | XCV0984 | elongation factor Tu | RecName: Full=Elongation factor Tu; Short=EF-Tu; | chromosome | CDS | 1114897 | 1191 | + | 0.633921 |
| tufB | XCV0996 | elongation factor Tu | RecName: Full=Elongation factor Tu; Short=EF-Tu; | chromosome | CDS | 1132257 | 1191 | + | 0.633081 |
| tyrS | XCV4010 | tyrosyl-tRNA synthetase | RecName: Full=Tyrosine--tRNA ligase; EC=6.1.1.1; AltName: Full=Tyrosyl-tRNA synthetase; Short=TyrRS; | chromosome | CDS | 4606827 | 1212 | - | 0.632013 |
| valS | XCV3684 | valyl-tRNA synthetase | RecName: Full=Valine--tRNA ligase; EC=6.1.1.9; AltName: Full=Valyl-tRNA synthetase; Short=ValRS; | chromosome | CDS | 4252656 | 2943 | + | 0.636425 |
| yadB | XCV2597 | glutamyl-tRNA synthetase | RecName: Full=Glutamyl-Q tRNA(Asp) synthetase; Short=Glu-Q-RSs; EC=6.1.1.-; | chromosome | CDS | 2927302 | 900 | + | 0.702222 |
| yjgF | XCV3509 | Translation initiation inhibitor | SubName: Full=Translation initiation inhibitor; | chromosome | CDS | 4021930 | 381 | - | 0.650919 |
| yrdC | XCV3933 | Sua5/YciO/YrdC family protein | RecName: Full=Threonylcarbamoyl-AMP synthase; Short=TC-AMP synthase; EC=2.7.7.87; AltName: Full=L-threonylcarbamoyladenylate synthase; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaC; AltName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein TsaC; | chromosome | CDS | 4515135 | 564 | + | 0.723404 |
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