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2024-05-04 13:26:55

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Xanthomonas campestris pv. vesicatoria, 85-10

Number of genes found: 189

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Xanthomonas campestris pv. vesicatoria, 85-10
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA XCV1609 tRNA/rRNA methyltransferasechromosome CDS1820321 750 + 0.673333
NA XCV3539 putative endoribonuclease L-PSPchromosome CDS4054126 504 - 0.619048
NA XCV1159 hypothetical proteinchromosome CDS1289614 558 + 0.621864
NA XCV1763 conserved hypothetical proteinchromosome CDS1983797 306 - 0.620915
NA XCV2267 putative adenine-specific DNA methyltransferasechromosome CDS2597873 1110 - 0.638739
NA XCV3976 conserved hypothetical proteinchromosome CDS4565981 198 - 0.626263
NA XCV4382 putative acetyltransferasechromosome CDS5044843 714 - 0.673669
NA XCV4388 hypothetical proteinchromosome CDS5051869 495 - 0.668687
NA XCV2581 tRNA/rRNA methyltransferasechromosome CDS2909434 765 - 0.688889
NA XCV0332 conserved hypothetical proteinchromosome CDS379969 393 + 0.669211
NA XCV3881 conserved hypothetical proteinchromosome CDS4468535 402 + 0.669154
NA XCV1030 putative secreted peptide amidasechromosome CDS1156361 1665 - 0.679279
NA XCV0983 GTP-binding proteinchromosome CDS1113307 1092 + 0.628205
NA XCV4422 putative pseudouridylate synthasechromosome CDS5098593 891 - 0.670034
NA XCV0236 tRNA/rRNA methyltransferase, SpoU class; TrmH familychromosome CDS277539 477 - 0.637317
NA XCV0963 asparaginasechromosome CDS1094640 486 - 0.592593
NA XCV2684 large Ala/Gln-rich proteinchromosome CDS3038955 3873 - 0.62613
NA XCVd0155 conserved hypothetical proteinpXCV183 CDS160051 5259 - 0.609622
NA XCV2878 putative HemK-family S-adenosyl-methionine-dependent methyltransferasechromosome CDS3271611 927 - 0.656958
NA XCV1421 conserved hypothetical proteinchromosome CDS1599902 603 + 0.645108
NA XCV3100 putative nucleotidyltransferasechromosome CDS3521421 714 + 0.64986
NA XCV3434 tRNA/rRNA methyltransferasechromosome CDS3925445 1173 - 0.688832
NA XCVd0053 hypothetical proteinpXCV183 CDS61211 960 + 0.619792
NA XCV4177 hypothetical proteinchromosome CDS4790433 204 + 0.495098
NA XCV3119 sigma-54 modulation proteinchromosome CDS3536793 270 + 0.633333
NA XCV1427 putative endoribonuclease L-PSPchromosome CDS1606681 348 + 0.652299
NA XCV0219 putative membrane proteinchromosome CDS257942 600 + 0.555
NA XCV2887 MiaB-family RNA modification enzymechromosome CDS3282591 1377 - 0.633987
NA XCV4040 conserved hypothetical proteinchromosome CDS4641278 612 - 0.620915
NA XCV3435 acetyltransferasechromosome CDS3926653 570 - 0.650877
NA XCV2389 conserved hypothetical proteinchromosome CDS2717269 1110 - 0.654054
NA XCV1395 mRNA 3'-end processing factorchromosome CDS1575813 1023 - 0.664712
NA XCV0932 conserved hypothetical proteinchromosome CDS1060652 249 + 0.658635
NA XCV1185 conserved hypothetical proteinchromosome CDS1325080 1665 + 0.627027
NA XCV3162 conserved hypothetical proteinchromosome CDS3583485 255 + 0.65098
NA XCV0925 conserved hypothetical proteinchromosome CDS1054951 561 - 0.680927
NA XCV4367 hypothetical proteinchromosome CDS5023762 399 - 0.619048
NA XCV2199 putative cytidine / deoxycytidylate deaminase family proteinchromosome CDS2528779 510 + 0.662745
NA XCV0252 putative peptidyl-tRNA hydrolasechromosome CDS292878 312 + 0.695513
NA XCV0868 putative TIM-barrel protein; NifR3 familychromosome CDS996846 999 - 0.664665
NA XCV0694 putative cytosine deaminasechromosome CDS787867 456 - 0.631579
alaS XCV1775 Alanyl-tRNA synthetasechromosome CDS1996385 2649 + 0.646282
argA XCV2546 amino-acid acetyltransferasechromosome CDS2873835 612 - 0.661765
argS XCV4029 arginyl-tRNA synthetasechromosome CDS4626133 1710 + 0.659649
asnS XCV1659 asparaginyl-tRNA synthetasechromosome CDS1867132 1395 - 0.62724
aspS XCV3286 aspartyl-tRNA synthetasechromosome CDS3751279 1767 - 0.660441
cca XCV0773 tRNA nucleotidyltransferasechromosome CDS883052 1233 - 0.662612
cysS XCV2553 cysteinyl-tRNA synthetasechromosome CDS2880939 1431 + 0.657582
dbpA XCV2587 ATP-dependent RNA helicasechromosome CDS2915525 1377 + 0.668119
deaD XCV2974 ATP-dependent RNA helicasechromosome CDS3383466 1947 - 0.681048
def1 XCV3636 peptide deformylasechromosome CDS4182922 516 - 0.612403
def2 XCV3926 peptide deformylasechromosome CDS4506857 513 - 0.619883
dtd XCV3913 D-tyrosyl-tRNA(Tyr) deacylasechromosome CDS4492883 441 - 0.666667
dusA XCV4118 putative dihydrouridine synthasechromosome CDS4713413 1005 - 0.683582
efP1 XCV1895 Elongation factor Pchromosome CDS2142892 567 - 0.61552
efP2 XCV2577 Elongation factor Pchromosome CDS2904542 567 - 0.626102
fmt XCV3925 methionyl-tRNA formyltransferasechromosome CDS4505553 924 - 0.709957
frr XCV1475 ribosome recycling factorchromosome CDS1657733 558 - 0.614695
ftsJ XCV1764 cell division protein FtsJchromosome CDS1984168 633 + 0.638231
fusA XCV0995 elongation factor Gchromosome CDS1130091 2118 + 0.618508
gatA XCV0315 glu-tRNAGln amidotransferase A subunitchromosome CDS359853 1461 - 0.720739
gcn3 XCV1671 initiation factor eIF-2Bchromosome CDS1881775 1065 + 0.690141
glnS XCV0930 glutaminyl-tRNA synthetasechromosome CDS1057871 1740 - 0.645977
gluS XCV3007 glutamyl-tRNA synthetasechromosome CDS3420015 1404 - 0.651709
glyQ XCV4311 glycyl-tRNA synthetase alpha chainchromosome CDS4954336 909 - 0.644664
glyS XCV4310 glycyl-tRNA synthetase beta chainchromosome CDS4951778 2241 - 0.655065
gshB XCV3234 glutathione synthetasechromosome CDS3691418 951 + 0.68244
hemK XCV0944 protein methyltransferase HemKchromosome CDS1072334 861 + 0.708479
hisS XCV1872 histidyl-tRNA synthetasechromosome CDS2118705 1449 + 0.648033
hslR XCV1349 heat shock protein 15 homologchromosome CDS1514185 408 + 0.666667
ileS XCV1290 isoleucyl-tRNA synthetasechromosome CDS1446526 2832 + 0.664195
infA XCV2051 initiation factor IF-1chromosome CDS2335005 219 - 0.543379
infB XCV2837 protein chain initiation factor IF-2chromosome CDS3226452 2715 - 0.649724
infC XCV2794 Initiation factor IF-3chromosome CDS3173989 480 - 0.608333
ksgA XCV0900 Dimethyladenosine transferasechromosome CDS1028290 789 - 0.66033
leuS XCV2938 leucyl-tRNA synthetasechromosome CDS3339919 2799 - 0.660236
lysS XCV1669 lysyl-tRNA synthetasechromosome CDS1879819 963 + 0.660436
lysU XCV1916 lysyl-tRNA synthetase heat induciblechromosome CDS2165335 1518 + 0.656126
map XCV1485 methionine aminopeptidasechromosome CDS1669473 777 + 0.622909
map XCV3894 methionine aminopeptidasechromosome CDS4479319 747 - 0.627845
miaA XCV1767 tRNA isopentenyltransferasechromosome CDS1987830 984 + 0.686992
miaB XCV2638 2-methylthioadenine synthetasechromosome CDS2973447 1455 + 0.643986
pcnB XCV1814 Polynucleotide adenylyltransferasechromosome CDS2046920 1368 + 0.649123
pheS XCV2791 phenylalanyl-tRNA synthetase alpha chainchromosome CDS3171926 996 - 0.645582
pnp XCV2833 polynucleotide phosphorylasechromosome CDS3222209 2115 - 0.629314
prfA XCV0975 peptide chain release factor 1chromosome CDS1105013 1086 - 0.651934
prfB XCV1915 peptide chain release factor 2chromosome CDS2164007 1125 + 0.628444
prfC XCV3179 peptide chain release factor 3chromosome CDS3611695 1605 + 0.624922
prmA XCV0560 ribosomal protein L11 methyltransferasechromosome CDS627412 921 - 0.684039
proS XCV3692 prolyl-tRNA synthetasechromosome CDS4265693 1866 + 0.664523
pth XCV0982 peptidyl tRNA hydrolasechromosome CDS1112648 582 + 0.639175
queA XCV2696 S-adenosylmethionine:tRNAribosyltransferase-isom erasechromosome CDS3052881 1071 - 0.685341
rbfA XCV2836 ribosomal-binding factor Achromosome CDS3225915 393 - 0.651399
rhlB XCV3954 ATP-dependent RNA helicasechromosome CDS4537342 1722 - 0.680604
rhlE XCV3733 ATP-dependent RNA helicasechromosome CDS4314998 1389 + 0.689705
rhlE XCV0470 ATP-dependent RNA helicasechromosome CDS531139 1362 - 0.687959
rimJ XCV3226 ribosomal protein alanine N-acetyltransferasechromosome CDS3677904 624 - 0.669872
rimK XCV3367 ribosomal protein S6 modification proteinchromosome CDS3854991 888 - 0.670045
rimM XCV1343 16S rRNA processing protein RimMchromosome CDS1508487 543 + 0.616943
rluB1 XCV1044 Pseudouridylate synthasechromosome CDS1170698 861 + 0.694541
rluB2 XCV2517 Pseudouridylate synthasechromosome CDS2840789 1644 + 0.703771
rluC XCV2424 pseudouridylate synthasechromosome CDS2751250 987 + 0.660588
rluD XCV3342 ribosomal large subunit pseudouridine synthase Dchromosome CDS3827016 996 - 0.703815
rluE XCV0298 pseudouridylate synthasechromosome CDS342900 573 + 0.685864
rluF XCV2972 Pseudouridylate synthasechromosome CDS3379936 762 - 0.61811
rnd XCV2611 ribonuclease Dchromosome CDS2944366 1092 + 0.677656
rne XCV2423 ribonuclease Echromosome CDS2747199 3651 - 0.66968
rng XCV2927 ribonuclease Gchromosome CDS3330051 1500 - 0.654667
rnpA XCV4486 ribonuclease P, protein componentchromosome CDS5177608 438 - 0.666667
rph XCV3514 ribonuclease PHchromosome CDS4026982 726 + 0.673554
rplA XCV0988 50S ribosomal protein L1chromosome CDS1117928 699 + 0.649499
rplB XCV1002 50S ribosomal protein L2chromosome CDS1137339 828 + 0.64372
rplC XCV0999 50S ribosomal protein L3chromosome CDS1135764 651 + 0.6298
rplD XCV1000 50S ribosomal protein L4chromosome CDS1136427 606 + 0.608911
rplE XCV1011 50S ribosomal protein L5chromosome CDS1141155 543 + 0.574586
rplF XCV1014 50S ribosomal protein L6chromosome CDS1142641 528 + 0.63447
rplI XCV1663 50S ribosomal protein L9chromosome CDS1870337 450 + 0.631111
rplJ XCV0989 50S ribosomal protein L10chromosome CDS1119169 534 + 0.638577
rplK XCV0987 50S ribosomal protein L11chromosome CDS1117496 429 + 0.615385
rplL XCV0990 50S ribosomal protein L7/L12chromosome CDS1119757 366 + 0.598361
rplM XCV0523 50S ribosomal protein L13chromosome CDS589610 429 + 0.613054
rplN XCV1009 50S ribosomal protein L14chromosome CDS1140442 369 + 0.604336
rplO XCV1018 50S ribosomal protein L15chromosome CDS1144510 444 + 0.648649
rplP XCV1006 50S ribosomal protein L16chromosome CDS1139548 414 + 0.618357
rplQ XCV1024 50S ribosomal protein L17chromosome CDS1149292 384 + 0.651042
rplR XCV1015 50S ribosomal protein L18chromosome CDS1143260 360 + 0.636111
rplS XCV1345 50S ribosomal protein L19chromosome CDS1509999 408 + 0.620098
rplT XCV2792 50S ribosomal protein L20chromosome CDS3173175 360 - 0.608333
rplU XCV1284 50S ribosomal protein L21chromosome CDS1441303 321 + 0.607477
rplV XCV1004 50S ribosomal protein L22chromosome CDS1138455 336 + 0.604167
rplW XCV1001 50S ribosomal protein L23chromosome CDS1137029 300 + 0.566667
rplX XCV1010 50S ribosomal protein L24chromosome CDS1140826 318 + 0.613208
rplY XCV0981 50S ribosomal protein L25chromosome CDS1111961 636 + 0.610063
rpmA XCV1285 50S ribosomal protein L27chromosome CDS1441636 261 + 0.624521
rpmB XCV4257 50S ribosomal protein L28chromosome CDS4887138 237 - 0.599156
rpmC XCV1007 50S ribosomal protein L29chromosome CDS1139961 186 + 0.602151
rpmD XCV1017 50S ribosomal protein L30chromosome CDS1144314 192 + 0.583333
rpmE XCV3506 50S ribosomal protein L31chromosome CDS4018381 243 - 0.539095
rpmF XCV1142 50S ribosomal protein L32chromosome CDS1271554 195 + 0.635897
rpmG XCV4256 50S ribosomal protein L33chromosome CDS4886957 168 - 0.505952
rpmH XCV4487 50S ribosomal protein L34chromosome CDS5178084 141 - 0.652482
rpmI XCV2793 50S ribosomal protein L35chromosome CDS3173545 198 - 0.606061
rpmJ XCV2498 50S ribosomal protein L36chromosome CDS2819350 126 + 0.603175
rpsA XCV2496 30S ribosomal protein S1chromosome CDS2816626 1686 - 0.619217
rpsB XCV1479 30S ribosomal protein S2chromosome CDS1662155 798 - 0.632832
rpsC XCV1005 30S ribosomal protein S3chromosome CDS1138808 735 + 0.610884
rpsD XCV1022 30S ribosomal protein S4chromosome CDS1147433 627 + 0.606061
rpsE XCV1016 30S ribosomal protein S5chromosome CDS1143779 543 + 0.624309
rpsF XCV1661 30S ribosomal protein S6chromosome CDS1869476 432 + 0.625
rpsG XCV0994 30S ribosomal protein S7chromosome CDS1129486 468 + 0.583333
rpsH XCV1013 30S ribosomal protein S8chromosome CDS1142227 399 + 0.588972
rpsI XCV0524 30S ribosomal protein S9chromosome CDS590041 393 + 0.631043
rpsJ XCV0998 30S ribosomal protein S10chromosome CDS1135417 336 + 0.583333
rpsK XCV1021 30S ribosomal protein S11chromosome CDS1147025 393 + 0.620865
rpsL XCV0993 30S ribosomal protein S12chromosome CDS1129099 375 + 0.624
rpsM XCV1020 30S ribosomal protein S13chromosome CDS1146658 357 + 0.621849
rpsN XCV1012 30S ribosomal protein S14chromosome CDS1141716 306 + 0.601307
rpsO XCV2834 30S ribosomal protein S15chromosome CDS3224492 261 - 0.582375
rpsP XCV1342 30S ribosomal protein S16chromosome CDS1508216 258 + 0.658915
rpsQ XCV1008 30S ribosomal protein S17chromosome CDS1140158 270 + 0.577778
rpsR XCV1662 30S ribosomal protein S18chromosome CDS1869919 231 + 0.588745
rpsS XCV1003 30S ribosomal protein S19chromosome CDS1138173 270 + 0.57037
rpsT XCV1287 30S ribosomal protein S20chromosome CDS1443302 270 - 0.625926
rpsU XCV3991 30S ribosomal protein S21chromosome CDS4580742 216 + 0.615741
rsmB XCV3924 ribosomal RNA small subunit methyltransferase Bchromosome CDS4504243 1311 - 0.693364
rsmC XCV3800 ribosomal RNA small subunit methyltransferase Cchromosome CDS4384802 1179 - 0.682782
rsuA1 XCV3259 ribosomal small subunit pseudouridylate synthasechromosome CDS3727646 711 - 0.658228
rsuA2 XCV3799 ribosomal small subunit pseudouridylate synthasechromosome CDS4384092 714 - 0.662465
rumA XCV1381 RNA methyltransferasechromosome CDS1560963 1434 + 0.658298
serS XCV1694 seryl-tRNA synthetasechromosome CDS1908954 1281 + 0.633099
smpA XCV1559 putative outer membrane proteinchromosome CDS1757757 396 - 0.608586
strA XCV2326 Streptomycin 3''-kinasechromosome CDS2657417 804 - 0.562189
tgt XCV2695 queuine tRNA-ribosyltransferasechromosome CDS3051654 1146 - 0.666667
thrS XCV2795 threonyl-tRNA synthetasechromosome CDS3174580 1905 - 0.638845
tniB XCV2342 Transposition protein TniBchromosome CDS2673250 909 - 0.644664
trmD XCV1344 tRNA (guanine-N(1)-)-methyltransferasechromosome CDS1509095 759 + 0.657444
trmU XCV2046 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase.chromosome CDS2330137 1137 - 0.669305
trpS XCV4098 tryptophanyl-tRNA synthetasechromosome CDS4695782 1290 - 0.629457
truA XCV2872 tRNA pseudouridine synthase Achromosome CDS3264343 774 - 0.666667
truB XCV2835 tRNA pseudouridine synthase Bchromosome CDS3224909 927 - 0.660194
truC XCV0250 Pseudouridylate synthasechromosome CDS291231 717 + 0.655509
tsf XCV1478 elongation factor Tschromosome CDS1661107 879 - 0.637088
tufA XCV0984 elongation factor Tuchromosome CDS1114897 1191 + 0.633921
tufB XCV0996 elongation factor Tuchromosome CDS1132257 1191 + 0.633081
tyrS XCV4010 tyrosyl-tRNA synthetasechromosome CDS4606827 1212 - 0.632013
valS XCV3684 valyl-tRNA synthetasechromosome CDS4252656 2943 + 0.636425
yadB XCV2597 glutamyl-tRNA synthetasechromosome CDS2927302 900 + 0.702222
yjgF XCV3509 Translation initiation inhibitorchromosome CDS4021930 381 - 0.650919
yrdC XCV3933 Sua5/YciO/YrdC family proteinchromosome CDS4515135 564 + 0.723404