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2024-05-10 19:52:53

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Tropheryma whipplei str. Twist, twist

Number of genes found: 114

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Tropheryma whipplei str. Twist, twist
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA TWT639 GTP-binding proteinSubName: Full=GTP-binding protein; chromosome CDS754099 1035 - 0.462802
NA TWT751 unknownRecName: Full=tRNA-specific adenosine deaminase; EC=3.5.4.33; chromosome CDS861941 513 + 0.448343
NA TWT318 protein-L-isoaspartate methyltransferaseSubName: Full=Protein-L-isoaspartate methyltransferase; EC=2.1.1.77; chromosome CDS401040 969 + 0.413829
NA TWT702 translation regulatorSubName: Full=Translation regulator; chromosome CDS815442 459 - 0.479303
NA TWT511 pseudouridylate synthase-like proteinRecName: Full=Pseudouridine synthase; EC=5.4.99.-; chromosome CDS613780 912 - 0.470395
NA TWT610 unknownRecName: Full=tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; EC=2.8.4.3; AltName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase; chromosome CDS715243 1413 - 0.481953
NA TWT346 tRNA/rRNA methyltransferaseSubName: Full=tRNA/rRNA methyltransferase; EC=2.1.1.-; chromosome CDS430059 792 - 0.44697
NA TWT807 unknownSubName: Full=Uncharacterized protein; chromosome CDS926763 339 - 0.386431
NA TWT305 unknownSubName: Full=Uncharacterized protein; chromosome CDS390534 282 - 0.478723
NA TWT433 unknownSubName: Full=Uncharacterized protein; chromosome CDS525171 678 - 0.492625
alaS TWT376 alanyl-tRNA synthetaseRecName: Full=Alanine--tRNA ligase; EC=6.1.1.7; AltName: Full=Alanyl-tRNA synthetase; Short=AlaRS; chromosome CDS462703 2643 - 0.458948
argS TWT351 arginyl-tRNA synthetaseRecName: Full=Arginine--tRNA ligase; EC=6.1.1.19; AltName: Full=Arginyl-tRNA synthetase; Short=ArgRS; chromosome CDS434677 1659 - 0.41953
aspS TWT754 aspartyl-tRNA synthetaseSubName: Full=Aspartyl-tRNA synthetase; EC=6.1.1.12; chromosome CDS864197 1341 - 0.459359
cysS1 TWT347 cysteinyl-tRNA synthetaseRecName: Full=Cysteine--tRNA ligase 1; EC=6.1.1.16; AltName: Full=Cysteinyl-tRNA synthetase 1; Short=CysRS 1; chromosome CDS430847 1401 - 0.437545
cysS2 TWT316 cysteinyl-tRNA synthetaseRecName: Full=Putative cysteine--tRNA ligase 2; EC=6.1.1.16; AltName: Full=Cysteinyl-tRNA synthetase 2; Short=CysRS 2; chromosome CDS398798 1353 + 0.444198
def TWT310 formylmethionine deformylaseRecName: Full=Peptide deformylase; Short=PDF; EC=3.5.1.88; AltName: Full=Polypeptide deformylase; chromosome CDS393598 687 - 0.464338
efp TWT368 elongation factor EF-PRecName: Full=Elongation factor P; Short=EF-P; chromosome CDS455932 558 - 0.444444
fmt TWT358 methionyl-tRNA formyltransferaseSubName: Full=Methionyl-tRNA formyltransferase; EC=2.1.2.9; chromosome CDS442656 1005 - 0.436816
frr TWT446 ribosome recycling factorRecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor; chromosome CDS539076 546 - 0.46337
fusA TWT675 elongation factor EF-GRecName: Full=Elongation factor G; Short=EF-G; chromosome CDS788698 2106 - 0.470085
gatA TWT412 glutamyl-tRNA(Gln) amidotransferase subunit ARecName: Full=Glutamyl-tRNA(Gln) amidotransferase subunit A; Short=Glu-ADT subunit A; EC=6.3.5.7; chromosome CDS502551 1575 - 0.471111
gatB TWT411 glutamyl-tRNA(Gln) amidotransferase subunit BRecName: Full=Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Short=Asp/Glu-ADT subunit B; EC=6.3.5.-; chromosome CDS501040 1515 - 0.466667
gatC TWT413 glutamyl-tRNA(Gln) amidotransferase subunit CSubName: Full=Glutamyl-tRNA(Gln) amidotransferase subunit C; EC=6.3.5.-; chromosome CDS504022 303 - 0.49505
gltS TWT209 glutamyl-tRNA synthetaseRecName: Full=Glutamate--tRNA ligase; EC=6.1.1.17; AltName: Full=Glutamyl-tRNA synthetase; Short=GluRS; chromosome CDS291133 1443 + 0.446985
glyQS TWT500 glycyl-tRNA synthetase alpha chain and beta chainSubName: Full=Glycyl-tRNA synthetase alpha chain and beta chain; EC=6.1.1.14; chromosome CDS597010 3075 + 0.44
gpsI TWT421 polyribonucleotide nucleotidyltransferaseRecName: Full=Polyribonucleotide nucleotidyltransferase; EC=2.7.7.8; AltName: Full=Polynucleotide phosphorylase; Short=PNPase; chromosome CDS514017 2217 - 0.494362
hemK TWT434 protoporphyrinogen oxidaseSubName: Full=Protoporphyrinogen oxidase; chromosome CDS525897 858 - 0.473193
hisS TWT785 histidyl-tRNA synthetaseRecName: Full=Probable histidine--tRNA ligase; EC=6.1.1.21; AltName: Full=Histidyl-tRNA synthetase; Short=HisRS; chromosome CDS901587 1281 - 0.453552
ileS TWT477 isoleucyl-tRNA synthetaseRecName: Full=Isoleucine--tRNA ligase; EC=6.1.1.5; AltName: Full=Isoleucyl-tRNA synthetase; Short=IleRS; chromosome CDS565841 3201 - 0.461418
infA TWT532 translation initiation factor IF-1RecName: Full=Translation initiation factor IF-1; chromosome CDS637011 222 - 0.504505
infB TWT157 translation initiation factor IF-2RecName: Full=Translation initiation factor IF-2; chromosome CDS194529 2412 + 0.505804
infC TWT164 translation initiation factor IF-3RecName: Full=Translation initiation factor IF-3; chromosome CDS204803 549 + 0.499089
ksgA TWT203 dimethyladenosine transferaseSubName: Full=Dimethyladenosine transferase; EC=2.1.1.-; chromosome CDS276629 1347 + 0.483296
leuS TWT385 leucyl-tRNA synthetaseRecName: Full=Leucine--tRNA ligase; EC=6.1.1.4; AltName: Full=Leucyl-tRNA synthetase; Short=LeuRS; chromosome CDS472800 2421 - 0.439075
lysS TWT062 lysyl-tRNA synthetaseRecName: Full=Lysine--tRNA ligase; EC=6.1.1.6; AltName: Full=Lysyl-tRNA synthetase; chromosome CDS62866 1638 - 0.454823
map TWT259 methionine aminopeptidaseRecName: Full=Methionine aminopeptidase; Short=MAP; Short=MetAP; EC=3.4.11.18; AltName: Full=Peptidase M; chromosome CDS342744 927 - 0.446602
metS TWT763 methionyl-tRNA synthetaseRecName: Full=Methionine--tRNA ligase; EC=6.1.1.10; AltName: Full=Methionyl-tRNA synthetase; chromosome CDS874080 1752 + 0.454909
miaA TWT609 tRNA isopentenylpyrophosphate transferaseRecName: Full=tRNA dimethylallyltransferase; EC=2.5.1.75; AltName: Full=Dimethylallyl diphosphate:tRNA dimethylallyltransferase; Short=DMAPP:tRNA dimethylallyltransferase; Short=DMATase; AltName: Full=Isopentenyl-diphosphate:tRNA isopentenyltransferase; Short=IPP transferase; Short=IPPT; Short=IPTase; chromosome CDS714262 906 - 0.460265
pcnA TWT800 poly(A) polymeraseSubName: Full=Poly(A) polymerase; EC=2.7.7.19; chromosome CDS919344 1455 + 0.502406
pheS TWT167 phenylalanyl-tRNA synthetase alpha chainRecName: Full=Phenylalanine--tRNA ligase alpha subunit; EC=6.1.1.20; AltName: Full=Phenylalanyl-tRNA synthetase alpha subunit; Short=PheRS; chromosome CDS206443 1011 + 0.465875
prfA TWT435 peptide chain release factor RF-1SubName: Full=Peptide chain release factor RF-1; chromosome CDS526758 1044 - 0.467433
prfB TWT198 peptide chain release factor RF-2SubName: Full=Peptide chain release factor RF-2; chromosome CDS265210 1131 + 0.47038
proS TWT183 prolyl-tRNA synthetaseRecName: Full=Proline--tRNA ligase; EC=6.1.1.15; AltName: Full=Prolyl-tRNA synthetase; Short=ProRS; chromosome CDS232643 1842 - 0.466341
pth TWT651 peptidyl-tRNA hydrolaseRecName: Full=Peptidyl-tRNA hydrolase; Short=PTH; EC=3.1.1.29; chromosome CDS765961 561 - 0.461676
rbfA TWT159 ribosome-binding factor ARecName: Full=Ribosome-binding factor A; chromosome CDS197284 591 + 0.485618
rimM TWT459 16S rRNA processing proteinRecName: Full=Ribosome maturation factor RimM; chromosome CDS550253 549 - 0.486339
rnd TWT394 ribonuclease DSubName: Full=Ribonuclease D; EC=3.1.26.3; chromosome CDS484164 1176 + 0.394558
rng TWT474 ribonuclease GSubName: Full=Ribonuclease G; chromosome CDS561694 1650 - 0.48303
rph TWT622 ribonuclease PHRecName: Full=Ribonuclease PH; Short=RNase PH; EC=2.7.7.56; AltName: Full=tRNA nucleotidyltransferase; chromosome CDS728642 771 - 0.46952
rplA TWT713 50S ribosomal protein L1RecName: Full=50S ribosomal protein L1; chromosome CDS826350 684 - 0.49269
rplB TWT551 50S ribosomal protein L2RecName: Full=50S ribosomal protein L2; chromosome CDS646485 834 - 0.528777
rplC TWT554 50S ribosomal protein L3RecName: Full=50S ribosomal protein L3; chromosome CDS648370 633 - 0.522907
rplD TWT553 50S ribosomal protein L4RecName: Full=50S ribosomal protein L4; chromosome CDS647634 747 - 0.519411
rplE TWT542 50S ribosomal protein L5RecName: Full=50S ribosomal protein L5; chromosome CDS642903 552 - 0.472826
rplF TWT540 50S ribosomal protein L6RecName: Full=50S ribosomal protein L6; chromosome CDS641936 597 - 0.479062
rplI TWT105 50S ribosomal protein L9RecName: Full=50S ribosomal protein L9; chromosome CDS125408 462 - 0.487013
rplJ TWT712 50S ribosomal protein L10RecName: Full=50S ribosomal protein L10; chromosome CDS825715 501 - 0.499002
rplK TWT714 50S ribosomal protein L11RecName: Full=50S ribosomal protein L11; chromosome CDS827030 426 - 0.476526
rplL TWT711 50S ribosomal protein L7/L12RecName: Full=50S ribosomal protein L7/L12; chromosome CDS825323 396 - 0.497475
rplM TWT144 50S ribosomal protein L13RecName: Full=50S ribosomal protein L13; chromosome CDS178796 429 + 0.503497
rplN TWT544 50S ribosomal protein L14RecName: Full=50S ribosomal protein L14; chromosome CDS643795 372 - 0.505376
rplO TWT536 50S ribosomal protein L15RecName: Full=50S ribosomal protein L15; chromosome CDS640075 483 - 0.509317
rplP TWT547 50S ribosomal protein L16RecName: Full=50S ribosomal protein L16; chromosome CDS644747 432 - 0.49537
rplQ TWT527 50S ribosomal protein L17RecName: Full=50S ribosomal protein L17; chromosome CDS634527 540 - 0.557407
rplR TWT539 50S ribosomal protein L18RecName: Full=50S ribosomal protein L18; chromosome CDS641580 360 - 0.508333
rplS TWT457 50S ribosomal protein L19RecName: Full=50S ribosomal protein L19; chromosome CDS549076 348 - 0.468391
rplT TWT166 50S ribosomal protein L20RecName: Full=50S ribosomal protein L20; chromosome CDS205649 411 + 0.508516
rplU TWT473 50S ribosomal protein L21RecName: Full=50S ribosomal protein L21; chromosome CDS561256 348 - 0.5
rplV TWT549 50S ribosomal protein L22RecName: Full=50S ribosomal protein L22; chromosome CDS645840 360 - 0.488889
rplW TWT552 50S ribosomal protein L23RecName: Full=50S ribosomal protein L23; chromosome CDS647326 312 - 0.432692
rplX TWT543 50S ribosomal protein L24RecName: Full=50S ribosomal protein L24; chromosome CDS643451 342 - 0.467836
rplY TWT654 50S ribosomal protein L25RecName: Full=50S ribosomal protein L25; AltName: Full=General stress protein CTC; chromosome CDS768215 627 - 0.526316
rpmA TWT472 50S ribosomal protein L27RecName: Full=50S ribosomal protein L27; chromosome CDS560967 249 - 0.566265
rpmB TWT113 50S ribosomal protein L28RecName: Full=50S ribosomal protein L28; chromosome CDS132174 237 + 0.540084
rpmC TWT546 50S ribosomal protein L29RecName: Full=50S ribosomal protein L29; chromosome CDS644521 264 - 0.492424
rpmD TWT537 50S ribosomal protein L30RecName: Full=50S ribosomal protein L30; chromosome CDS640554 198 - 0.484848
rpmE TWT314 50S ribosomal protein L31RecName: Full=50S ribosomal protein L31 type B; chromosome CDS397445 252 + 0.428571
rpmF TWT563 50S ribosomal protein L32RecName: Full=50S ribosomal protein L32; chromosome CDS655897 198 - 0.570707
rpmG TWT114 50S ribosomal protein L33RecName: Full=50S ribosomal protein L33; chromosome CDS132410 171 + 0.473684
rpmH TWT808 50S ribosomal protein L34RecName: Full=50S ribosomal protein L34; chromosome CDS927114 153 - 0.490196
rpmI TWT165 50S ribosomal protein L35RecName: Full=50S ribosomal protein L35; chromosome CDS205422 198 + 0.530303
rpmJ TWT531 50S ribosomal protein L36RecName: Full=50S ribosomal protein L36; chromosome CDS636889 120 - 0.491667
rpsA TWT293 30S ribosomal protein S1RecName: Full=30S ribosomal protein S1; chromosome CDS376141 1422 + 0.450774
rpsB TWT449 30S ribosomal protein S2RecName: Full=30S ribosomal protein S2; chromosome CDS541343 927 - 0.482201
rpsC TWT548 30S ribosomal protein S3RecName: Full=30S ribosomal protein S3; chromosome CDS645175 663 - 0.505279
rpsD TWT378 30S ribosomal protein S4RecName: Full=30S ribosomal protein S4; chromosome CDS465554 786 - 0.525445
rpsE TWT538 30S ribosomal protein S5RecName: Full=30S ribosomal protein S5; chromosome CDS640723 861 - 0.524971
rpsF TWT108 30S ribosomal protein S6RecName: Full=30S ribosomal protein S6; chromosome CDS126696 462 - 0.484848
rpsG TWT676 30S ribosomal protein S7RecName: Full=30S ribosomal protein S7; chromosome CDS790839 471 - 0.5138
rpsH TWT541 30S ribosomal protein S8RecName: Full=30S ribosomal protein S8; chromosome CDS642475 399 - 0.483709
rpsI TWT145 30S ribosomal protein S9RecName: Full=30S ribosomal protein S9; chromosome CDS179224 465 + 0.56129
rpsJ TWT555 30S ribosomal protein S10RecName: Full=30S ribosomal protein S10; chromosome CDS649012 309 - 0.466019
rpsK TWT529 30S ribosomal protein S11RecName: Full=30S ribosomal protein S11; chromosome CDS636084 393 - 0.516539
rpsL TWT677 30S ribosomal protein S12RecName: Full=30S ribosomal protein S12; chromosome CDS791309 375 - 0.546667
rpsM TWT530 30S ribosomal protein S13RecName: Full=30S ribosomal protein S13; chromosome CDS636480 375 - 0.52
rpsN TWT115 30S ribosomal protein S14RecName: Full=30S ribosomal protein S14; chromosome CDS132581 306 + 0.558824
rpsO TWT422 30S ribosomal protein S15RecName: Full=30S ribosomal protein S15; chromosome CDS516269 429 - 0.512821
rpsP TWT461 30S ribosomal protein S16RecName: Full=30S ribosomal protein S16; chromosome CDS551028 447 - 0.548098
rpsQ TWT545 30S ribosomal protein S17RecName: Full=30S ribosomal protein S17; chromosome CDS644264 261 - 0.478927
rpsR TWT106 30S ribosomal protein S18RecName: Full=30S ribosomal protein S18; chromosome CDS125866 252 - 0.484127
rpsS TWT550 30S ribosomal protein S19RecName: Full=30S ribosomal protein S19; chromosome CDS646199 435 - 0.498851
rpsT TWT276 30S ribosomal protein S20RecName: Full=30S ribosomal protein S20; chromosome CDS359528 288 - 0.506944
serS TWT726 seryl-tRNA synthetaseRecName: Full=Serine--tRNA ligase; EC=6.1.1.11; AltName: Full=Seryl-tRNA synthetase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec) synthetase; chromosome CDS837067 1254 + 0.466507
tgt TWT152 queuine tRNA-ribosyltransferaseRecName: Full=Queuine tRNA-ribosyltransferase; EC=2.4.2.29; AltName: Full=Guanine insertion enzyme; AltName: Full=tRNA-guanine transglycosylase; chromosome CDS189363 1215 - 0.460082
thrS TWT262 threonyl-tRNA synthetaseRecName: Full=Threonine--tRNA ligase; EC=6.1.1.3; AltName: Full=Threonyl-tRNA synthetase; Short=ThrRS; chromosome CDS345975 1923 + 0.460218
trmD TWT458 tRNA (guanine-N1-)-methyltransferaseRecName: Full=tRNA (guanine-N(1)-)-methyltransferase; EC=2.1.1.228; AltName: Full=M1G-methyltransferase; AltName: Full=tRNA [GM37] methyltransferase; chromosome CDS549516 705 - 0.42695
trmU TWT415 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferaseRecName: Full=tRNA-specific 2-thiouridylase MnmA; EC=2.8.1.-; chromosome CDS506336 1080 - 0.492593
trpS TWT686 tryptophanyl-tRNA synthetaseRecName: Full=Tryptophan--tRNA ligase; EC=6.1.1.2; AltName: Full=Tryptophanyl-tRNA synthetase; Short=TrpRS; chromosome CDS800420 1008 + 0.453373
truA TWT526 pseudouridylate synthase IRecName: Full=tRNA pseudouridine synthase A; EC=5.4.99.12; AltName: Full=tRNA pseudouridine(38-40) synthase; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I; chromosome CDS633698 948 - 0.485232
truB TWT087 tRNA pseudouridine synthase BRecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.25; AltName: Full=tRNA pseudouridine(55) synthase; Short=Psi55 synthase; AltName: Full=tRNA pseudouridylate synthase; AltName: Full=tRNA-uridine isomerase; chromosome CDS96533 1134 - 0.440035
tsf TWT448 elongation factor EF-TsRecName: Full=Elongation factor Ts; Short=EF-Ts; chromosome CDS540491 822 - 0.501217
tuf TWT120 elongation factor EF-TuRecName: Full=Elongation factor Tu; Short=EF-Tu; chromosome CDS137614 1194 + 0.50335
tyrS TWT169 tyrosyl-tRNA synthetaseRecName: Full=Tyrosine--tRNA ligase; EC=6.1.1.1; AltName: Full=Tyrosyl-tRNA synthetase; Short=TyrRS; chromosome CDS210623 1416 + 0.47952
valS TWT478 valyl-tRNA synthetaseRecName: Full=Valine--tRNA ligase; EC=6.1.1.9; AltName: Full=Valyl-tRNA synthetase; Short=ValRS; chromosome CDS569208 2571 + 0.452353