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2024-05-06 22:22:55

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Listeria monocytogenes str. 4b F2365, 4b F2365

Number of genes found: 157

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Listeria monocytogenes str. 4b F2365, 4b F2365
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA LMOf2365_0227 S4 domain proteinchromosome CDS228239 279 + 0.379928
NA LMOf2365_2834 acetyltransferase, GNAT familychromosome CDS2893263 525 - 0.380952
NA LMOf2365_0264 conserved hypothetical proteinchromosome CDS272767 615 + 0.380488
NA LMOf2365_1562 ribonuclease, Rne/Rng familychromosome CDS1556918 1362 - 0.367107
NA LMOf2365_1508 conserved hypothetical protein TIGR00253chromosome CDS1500952 291 - 0.350515
NA LMOf2365_0866 amidasechromosome CDS887596 1848 - 0.374459
NA LMOf2365_0222 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5chromosome CDS220978 624 + 0.394231
NA LMOf2365_0239 dihydrouridine synthase family proteinchromosome CDS239677 996 + 0.423695
NA LMOf2365_1776 RNA methyltransferase, TrmA familychromosome CDS1799801 1362 - 0.389868
NA LMOf2365_0073 conserved domain proteinchromosome CDS76841 396 + 0.348485
NA LMOf2365_1967 putative ribosomal protein S1chromosome CDS1993562 1146 - 0.376963
NA LMOf2365_0884 ATP-dependent RNA helicase DeaDchromosome CDS905902 1560 + 0.432692
NA LMOf2365_2514 Sua5/YciO/YrdC/YwlC family proteinchromosome CDS2572010 1038 - 0.429672
NA LMOf2365_1469 putative ATP-dependent RNA helicasechromosome CDS1461798 1308 - 0.374618
NA LMOf2365_2005 acetyltransferase, GNAT familychromosome CDS2035147 528 - 0.371212
NA LMOf2365_0229 RNA-binding proteinchromosome CDS229283 429 + 0.410256
NA LMOf2365_1722 acetyltransferase, GNAT familychromosome CDS1744131 543 - 0.377532
NA LMOf2365_1341 ribosomal protein L7A familychromosome CDS1333060 300 + 0.393333
NA LMOf2365_0956 RNA methyltransferase, TrmH family, group 2chromosome CDS973818 510 + 0.366667
NA LMOf2365_1746 helicase domain proteinchromosome CDS1764136 1329 - 0.388262
NA LMOf2365_1227 RNA methyltransferase, TrmH familychromosome CDS1216159 759 + 0.393939
NA LMOf2365_1560 conserved hypothetical proteinchromosome CDS1556117 318 - 0.402516
NA LMOf2365_0405 conserved hypothetical proteinchromosome CDS425755 450 + 0.382222
NA LMOf2365_1383 hemolysin Achromosome CDS1368924 825 + 0.390303
NA LMOf2365_2699 cytidine/deoxycytidylate deaminase family proteinchromosome CDS2746779 471 - 0.418259
NA LMOf2365_1300 conserved hypothetical proteinchromosome CDS1288100 312 + 0.38141
NA LMOf2365_1319 acetyltransferase, GNAT familychromosome CDS1310236 525 - 0.373333
NA LMOf2365_0861 putative endoribonuclease L-PSPchromosome CDS882272 378 + 0.39418
NA LMOf2365_1934 polyA polymerasechromosome CDS1959877 1182 - 0.389171
NA LMOf2365_0731 conserved hypothetical proteinchromosome CDS743518 1047 + 0.428844
NA LMOf2365_0085 conserved hypothetical proteinchromosome CDS85618 324 + 0.333333
NA LMOf2365_1711 conserved hypothetical proteinchromosome CDS1733339 528 - 0.393939
NA LMOf2365_2340 S1 RNA binding domain proteinchromosome CDS2399561 354 - 0.347458
NA LMOf2365_1871 ribosomal large subunit pseudouridine synthase, RluA familychromosome CDS1898899 912 - 0.389254
NA LMOf2365_2490 acetyltransferase, GNAT familychromosome CDS2550318 546 + 0.335165
NA LMOf2365_0989 ribosomal large subunit pseudouridine synthase, RluA familychromosome CDS1001164 891 + 0.373737
NA LMOf2365_2277 ribosomal large subunit pseudouridine synthase, RluA familychromosome CDS2329697 870 + 0.398851
NA LMOf2365_1727 RNA methyltransferase, TrmA familychromosome CDS1746837 1380 - 0.415217
NA LMOf2365_0253 RNA methyltransferase, TrmH family, group 3chromosome CDS266567 756 + 0.407407
NA LMOf2365_1165 PduH proteinchromosome CDS1165972 348 + 0.387931
NA LMOf2365_2515 modification methylase, HemK familychromosome CDS2573348 852 - 0.383803
alaS LMOf2365_1523 alanyl-tRNA synthetasechromosome CDS1512203 2640 - 0.396212
ansA LMOf2365_1969 L-asparaginasechromosome CDS1995756 963 - 0.376947
argS LMOf2365_2533 arginyl-tRNA synthetasechromosome CDS2594176 1671 - 0.381209
asnS LMOf2365_1925 asparaginyl-tRNA synthetasechromosome CDS1950019 1293 - 0.399845
aspS LMOf2365_1538 aspartyl-tRNA synthetasechromosome CDS1530561 1776 - 0.392455
cysS LMOf2365_0251 cysteinyl-tRNA synthetasechromosome CDS264739 1416 + 0.403955
dbpA LMOf2365_1260 ATP-dependent RNA helicase DbpAchromosome CDS1253155 1413 + 0.367304
def LMOf2365_1072 peptide deformylasechromosome CDS1078202 552 - 0.396739
dtd LMOf2365_1541 D-tyrosyl-tRNA(Tyr) deacylasechromosome CDS1535387 453 - 0.399558
efp LMOf2365_1372 translation elongation factor Pchromosome CDS1359708 558 + 0.378136
fmt LMOf2365_1851 methionyl-tRNA formyltransferasechromosome CDS1876953 939 - 0.41853
frr LMOf2365_1331 ribosome recycling factorchromosome CDS1320003 558 + 0.360215
fusA LMOf2365_2633 translation elongation factor Gchromosome CDS2679045 2088 - 0.42864
gatA LMOf2365_1780 glutamyl-tRNA(Gln) amidotransferase, A subunitchromosome CDS1804609 1452 - 0.37741
gatB LMOf2365_1779 glutamyl-tRNA(Gln) amidotransferase, B subunitchromosome CDS1803167 1431 - 0.381551
gatC LMOf2365_1781 glutamyl-tRNA(Gln) amidotransferase, C subunitchromosome CDS1806084 294 - 0.37415
gid LMOf2365_1294 gid proteinchromosome CDS1282283 1305 + 0.400766
gltX LMOf2365_0249 glutamyl-tRNA synthetasechromosome CDS262244 1476 + 0.379404
glyQ LMOf2365_1478 glycyl-tRNA synthetase, alpha subunitchromosome CDS1472847 891 - 0.396184
glyS LMOf2365_1477 glycyl-tRNA synthetase, beta subunitchromosome CDS1470788 2067 - 0.36091
hisS LMOf2365_1539 histidyl-tRNA synthetasechromosome CDS1532338 1278 - 0.377152
ileS LMOf2365_2044 isoleucyl-tRNA synthetasechromosome CDS2079045 2766 - 0.407448
infA LMOf2365_2583 translation initiation factor IF-1chromosome CDS2642702 219 - 0.383562
infB LMOf2365_1342 translation initiation factor IF-2chromosome CDS1333382 2349 + 0.395062
infC LMOf2365_1810 translation initiation factor IF-3chromosome CDS1838950 516 - 0.414729
ksgA LMOf2365_0199 dimethyladenosine transferasechromosome CDS197943 888 + 0.398649
leuS LMOf2365_1684 leucyl-tRNA synthetasechromosome CDS1689773 2412 - 0.408789
lysS LMOf2365_0240 lysyl-tRNA synthetasechromosome CDS240787 1497 + 0.39145
map LMOf2365_1733 methionine aminopeptidase, type Ichromosome CDS1751574 759 - 0.399209
miaA LMOf2365_1311 tRNA delta(2)-isopentenylpyrophosphate transferasechromosome CDS1302963 918 + 0.372549
pheS LMOf2365_1230 phenylalanyl-tRNA synthetase, alpha subunitchromosome CDS1218169 1053 + 0.40076
pnp LMOf2365_1348 polyribonucleotide nucleotidyltransferasechromosome CDS1339044 2172 + 0.39825
prf1 LMOf2365_2516 peptide chain release factor 1chromosome CDS2574186 1077 - 0.428969
prfB LMOf2365_2482 peptide chain release factor 2, programmed frameshiftchromosome CDS2541916 1101 - 0.383288
prfC LMOf2365_1009 peptide chain release factor 3chromosome CDS1018500 1569 + 0.399618
prmA LMOf2365_1490 ribosomal protein L11 methyltransferasechromosome CDS1482720 945 - 0.387302
proS LMOf2365_1336 prolyl-tRNA synthetasechromosome CDS1324825 1707 + 0.391916
pth LMOf2365_0224 peptidyl-tRNA hydrolasechromosome CDS222382 561 + 0.383244
queA LMOf2365_1550 S-adenosylmethionine:tRNAribosyltransferase-isom erasechromosome CDS1546073 1029 - 0.398445
rbfA LMOf2365_1344 ribosome-binding factor Achromosome CDS1336022 345 + 0.382609
rimM LMOf2365_1820 16S rRNA processing protein RimMchromosome CDS1845071 510 - 0.362745
rluB LMOf2365_1979 ribosomal large subunit pseudouridine synthase Bchromosome CDS2011357 735 - 0.364626
rnpA LMOf2365_2845 ribonuclease P protein componentchromosome CDS2903779 360 - 0.305556
rph LMOf2365_1247 ribonuclease PHchromosome CDS1241751 747 + 0.42838
rplA LMOf2365_0261 ribosomal protein L1chromosome CDS270755 690 + 0.401449
rplB LMOf2365_2602 ribosomal protein L2chromosome CDS2651812 834 - 0.428058
rplC LMOf2365_2605 ribosomal protein L3chromosome CDS2653619 630 - 0.419048
rplD LMOf2365_2604 ribosomal protein L4chromosome CDS2652970 624 - 0.395833
rplE LMOf2365_2593 ribosomal protein L5chromosome CDS2648138 540 - 0.383333
rplF LMOf2365_2590 ribosomal protein L6chromosome CDS2646925 537 - 0.402235
rplI LMOf2365_0062 ribosomal protein L9chromosome CDS62997 447 + 0.35123
rplJ LMOf2365_0262 ribosomal protein L10chromosome CDS271692 501 + 0.399202
rplK LMOf2365_0260 ribosomal protein L11chromosome CDS270290 426 + 0.408451
rplL LMOf2365_0263 ribosomal protein L7/L12chromosome CDS272271 363 + 0.391185
rplM LMOf2365_2570 ribosomal protein L13chromosome CDS2633201 438 - 0.39726
rplN LMOf2365_2595 ribosomal protein L14chromosome CDS2649053 369 - 0.414634
rplO LMOf2365_2586 ribosomal protein L15chromosome CDS2645309 441 - 0.403628
rplP LMOf2365_2598 ribosomal protein L16chromosome CDS2649972 435 - 0.441379
rplQ LMOf2365_2578 ribosomal protein L17chromosome CDS2640211 408 - 0.411765
rplR LMOf2365_2589 ribosomal protein L18chromosome CDS2646526 360 - 0.383333
rplS LMOf2365_1814 ribosomal protein L19chromosome CDS1841583 345 - 0.417391
rplT LMOf2365_1808 ribosomal protein L20chromosome CDS1838329 360 - 0.369444
rplU LMOf2365_1561 ribosomal protein L21chromosome CDS1556453 309 - 0.375405
rplV LMOf2365_2600 ribosomal protein L22chromosome CDS2651069 357 - 0.417367
rplW LMOf2365_2603 ribosomal protein L23chromosome CDS2652686 285 - 0.368421
rplX LMOf2365_2594 ribosomal protein L24chromosome CDS2648704 312 - 0.384615
rpmA LMOf2365_1559 ribosomal protein L27chromosome CDS1555813 291 - 0.426117
rpmB LMOf2365_1844 ribosomal protein L28chromosome CDS1870327 189 + 0.428571
rpmC LMOf2365_2597 ribosomal protein L29chromosome CDS2649791 192 - 0.390625
rpmD LMOf2365_2587 ribosomal protein L30chromosome CDS2645805 180 - 0.377778
rpmE LMOf2365_2521 ribosomal protein L31chromosome CDS2579404 246 - 0.406504
rpmF-1 LMOf2365_0516 ribosomal protein L32chromosome CDS531418 171 + 0.467836
rpmF-2 LMOf2365_2078 ribosomal protein L32chromosome CDS2118746 174 - 0.436782
rpmG-1 LMOf2365_0256 ribosomal protein L33chromosome CDS268627 150 + 0.393333
rpmG-2 LMOf2365_1352 ribosomal protein L33chromosome CDS1343503 165 + 0.345455
rpmH LMOf2365_2846 ribosomal protein L34chromosome CDS2904228 135 - 0.37037
rpmI LMOf2365_1809 ribosomal protein L35chromosome CDS1838728 201 - 0.402985
rpmJ LMOf2365_2582 ribosomal protein L36chromosome CDS2642485 114 - 0.298246
rpsB LMOf2365_1679 ribosomal protein S2chromosome CDS1684854 750 - 0.389333
rpsC LMOf2365_2599 ribosomal protein S3chromosome CDS2650409 657 - 0.436834
rpsD LMOf2365_1618 ribosomal protein S4chromosome CDS1618825 603 + 0.41791
rpsE LMOf2365_2588 ribosomal protein S5chromosome CDS2646001 504 - 0.428571
rpsF LMOf2365_0053 ribosomal protein S6chromosome CDS55768 294 + 0.357143
rpsG LMOf2365_2634 ribosomal protein S7chromosome CDS2681198 471 - 0.414013
rpsH LMOf2365_2591 ribosomal protein S8chromosome CDS2647492 399 - 0.39599
rpsI LMOf2365_2569 ribosomal protein S9chromosome CDS2632787 393 - 0.458015
rpsJ LMOf2365_2606 ribosomal protein S10chromosome CDS2654283 309 - 0.407767
rpsK LMOf2365_2580 ribosomal protein S11chromosome CDS2641689 390 - 0.417949
rpsL LMOf2365_2635 ribosomal protein S12chromosome CDS2681699 414 - 0.391304
rpsM LMOf2365_2581 ribosomal protein S13chromosome CDS2642101 366 - 0.415301
rpsN-1 LMOf2365_1911 ribosomal protein S14chromosome CDS1936188 270 - 0.485185
rpsN-2 LMOf2365_2592 ribosomal protein S14chromosome CDS2647921 186 - 0.413978
rpsO LMOf2365_1347 ribosomal protein S15chromosome CDS1338527 270 + 0.374074
rpsP LMOf2365_1824 ribosomal protein S16chromosome CDS1847105 273 - 0.373626
rpsQ LMOf2365_2596 ribosomal protein S17chromosome CDS2649501 264 - 0.367424
rpsR LMOf2365_0055 ribosomal protein S18chromosome CDS56697 240 + 0.395833
rpsS LMOf2365_2601 ribosomal protein S19chromosome CDS2651446 279 - 0.426523
rpsT LMOf2365_1499 ribosomal protein S20chromosome CDS1493625 255 + 0.392157
rpsU LMOf2365_1488 ribosomal protein S21chromosome CDS1481581 174 - 0.367816
rsuA LMOf2365_2312 ribosomal small subunit pseudouridine synthase Achromosome CDS2364461 702 - 0.408832
serS LMOf2365_2734 seryl-tRNA synthetasechromosome CDS2779843 1284 - 0.404984
speG LMOf2365_0009 spermidine N1-acetyltransferasechromosome CDS12257 519 + 0.33526
sun LMOf2365_1850 sun proteinchromosome CDS1875618 1335 - 0.387266
tgt LMOf2365_1549 queuine tRNA-ribosyltransferasechromosome CDS1544847 1140 - 0.4
thrS LMOf2365_1580 threonyl-tRNA synthetasechromosome CDS1574935 1923 - 0.394696
trmD LMOf2365_1819 tRNA (guanine-N1)-methyltransferasechromosome CDS1844334 738 - 0.424119
trmU LMOf2365_1531 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS1523645 1116 - 0.400538
trpS LMOf2365_2231 tryptophanyl-tRNA synthetasechromosome CDS2282633 996 + 0.36747
truA LMOf2365_2571 tRNA pseudouridine synthase Achromosome CDS2633833 747 - 0.402945
truB LMOf2365_1345 tRNA pseudouridine synthase Bchromosome CDS1336462 915 + 0.398907
tsf LMOf2365_1678 translation elongation factor Tschromosome CDS1683890 885 - 0.372881
tuf LMOf2365_2632 translation elongation factor Tuchromosome CDS2677749 1188 - 0.416667
tyrS LMOf2365_1619 tyrosyl-tRNA synthetasechromosome CDS1619527 1260 - 0.38254
valS LMOf2365_1573 valyl-tRNA synthetasechromosome CDS1565908 2652 - 0.360106
ychF LMOf2365_2770 GTP-binding protein YchFchromosome CDS2824049 1101 - 0.409628
yfiA LMOf2365_2484 ribosomal subunit interface proteinchromosome CDS2544816 564 - 0.343972