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2024-05-07 00:48:40

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Streptococcus pneumoniae TIGR4, TIGR4; ATCC BAA-334

Number of genes found: 154

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Streptococcus pneumoniae TIGR4, TIGR4; ATCC BAA-334
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SP_1082 acetyltransferase, GNAT familychromosome CDS1018494 552 + 0.355072
NA SP_0841 conserved hypothetical proteinchromosome CDS788410 591 + 0.406091
NA SP_0761 ATP-dependent RNA helicase, DEAD/DEAH box familychromosome CDS719900 1344 + 0.406994
NA SP_0486 RNA methyltransferase, TrmH familychromosome CDS466595 504 + 0.424603
NA SP_0097 conserved domain proteinchromosome CDS99169 1065 - 0.401878
NA SP_1457 RNA methyltransferase, TrmH family, group 3chromosome CDS1373554 729 + 0.426612
NA SP_1022 Sua5/YciO/YrdC family proteinchromosome CDS965357 600 + 0.438333
NA SP_1483 ATP-dependent RNA helicase, DEAD/DEAH box familychromosome CDS1395293 1083 + 0.409049
NA SP_0020 cytidine/deoxycytidylate deaminase family proteinchromosome CDS24319 468 + 0.435897
NA SP_1973 spoU rRNA Methylase family proteinchromosome CDS1878795 741 - 0.414305
NA SP_1223 conserved hypothetical proteinchromosome CDS1156713 255 - 0.360784
NA SP_1992 cell wall surface anchor family proteinchromosome CDS1895473 666 - 0.441441
NA SP_0566 acetyltransferase, GNAT familychromosome CDS531474 561 + 0.458111
NA SP_1419 acetyltransferase, GNAT familychromosome CDS1339908 552 - 0.398551
NA SP_1807 acetyltransferase, GNAT familychromosome CDS1721006 447 - 0.378076
NA SP_1237 acetyltransferase, GNAT familychromosome CDS1167740 564 - 0.322695
NA SP_1221 putative type II restriction endonucleasechromosome CDS1151348 3255 - 0.375422
NA SP_0255 acetyltransferase, GNAT familychromosome CDS227448 696 + 0.445402
NA SP_0953 acetyltransferase, GNAT familychromosome CDS901345 570 + 0.405263
NA SP_1029 RNA methyltransferase, TrmA familychromosome CDS970425 1632 + 0.409314
NA SP_1537 putative general stress protein 13chromosome CDS1446540 360 - 0.438889
NA SP_0555 ribosomal protein L7A familychromosome CDS522808 300 + 0.416667
NA SP_0498 putative endo-beta-N-acetylglucosaminidasechromosome CDS476529 4980 + 0.413855
NA SP_1106 conserved hypothetical proteinchromosome CDS1037546 345 + 0.417391
NA SP_2011 ribosomal large subunit pseudouridine synthase, RluD subfamilychromosome CDS1917999 876 + 0.393836
NA SP_1644 conserved hypothetical proteinchromosome CDS1541278 444 - 0.416667
NA SP_1901 RNA methyltransferase, TrmA familychromosome CDS1815445 1311 - 0.381388
NA SP_0781 hypothetical proteinchromosome CDS735333 321 - 0.383178
NA SP_0007 S4 domain proteinchromosome CDS8519 267 + 0.348315
NA SP_0004 GTP-binding proteinchromosome CDS3196 1116 + 0.40233
NA SP_2189 putative TIM-barrel protein, NifR3 familychromosome CDS2108829 957 + 0.486938
NA SP_1998 putative L-asparaginasechromosome CDS1900696 963 + 0.454829
NA SP_1567 endoribonuclease L-PSPchromosome CDS1474996 381 - 0.433071
NA SP_1903 conserved hypothetical proteinchromosome CDS1817703 534 + 0.38015
NA SP_1204 putative hemolysin Achromosome CDS1137314 597 - 0.440536
NA SP_1586 putative ATP-dependent RNA helicasechromosome CDS1489766 1575 - 0.435556
NA SP_1748 conserved hypothetical proteinchromosome CDS1649892 312 - 0.387821
NA SP_1099 ribosomal large subunit pseudouridine synthase, RluD subfamilychromosome CDS1031946 897 + 0.409142
NA SP_1554 polyA polymerase family proteinchromosome CDS1464500 1185 - 0.440506
alaS SP_1383 alanyl-tRNA synthetasechromosome CDS1306327 2619 - 0.447117
argS SP_2078 arginyl-tRNA synthetasechromosome CDS1988123 1692 + 0.422577
asnS SP_1542 asparaginyl-tRNA synthetasechromosome CDS1449792 1344 - 0.439732
aspS SP_2114 aspartyl-tRNA synthetasechromosome CDS2027528 1764 - 0.455782
ccs16 SP_0030 competence-induced protein Ccs16chromosome CDS30563 327 - 0.437309
cysS SP_0591 cysteinyl-tRNA synthetasechromosome CDS561787 1344 + 0.444196
def SP_1456 peptide deformylasechromosome CDS1372898 612 + 0.429739
def-2 SP_1549 polypeptide deformylasechromosome CDS1456975 411 - 0.452555
efp SP_0435 translation elongation factor Pchromosome CDS408330 561 - 0.409982
fmt SP_1735 methionyl-tRNA formyltransferasechromosome CDS1638736 936 - 0.462607
frr SP_0945 ribosome recycling factorchromosome CDS895124 558 + 0.426523
fusA SP_0273 translation elongation factor Gchromosome CDS248433 2082 + 0.433237
gatA SP_0437 glutamyl-tRNA(Gln) amidotransferase, A subunitchromosome CDS410461 1467 - 0.449898
gatB SP_0436 glutamyl-tRNA(Gln) amidotransferase, B subunitchromosome CDS409019 1443 - 0.456687
gatC SP_0438 glutamyl-tRNA(Gln) amidotransferase, C subunitchromosome CDS411927 303 - 0.445545
gid SP_0943 Gid proteinchromosome CDS892924 1371 + 0.449307
gltX SP_2069 glutamyl-tRNA synthetasechromosome CDS1976627 1461 - 0.407255
glyQ SP_1475 glycyl-tRNA synthetase, alpha subunitchromosome CDS1388824 918 - 0.436819
glyS SP_1474 glycyl-tRNA synthetase, beta subunitchromosome CDS1386576 2037 - 0.417771
hemK SP_1021 HemK proteinchromosome CDS964531 840 + 0.390476
hisS SP_2121 histidyl-tRNA synthetasechromosome CDS2032438 1290 - 0.466667
ileS SP_1659 isoleucyl-tRNA synthetasechromosome CDS1559245 2793 - 0.426781
infA SP_0232 translation initiation factor IF-1chromosome CDS205316 219 + 0.374429
infB SP_0556 translation initiation factor IF-2chromosome CDS523124 2877 + 0.448731
infC SP_0959 translation initiation factor IF-3chromosome CDS907315 558 + 0.387097
ksgA SP_1985 dimethyladenosine transferasechromosome CDS1888618 840 - 0.464286
leuS SP_0254 leucyl-tRNA synthetasechromosome CDS224752 2502 + 0.445643
lysS SP_0713 lysyl-tRNA synthetasechromosome CDS676624 1476 + 0.434959
map SP_1084 methionine aminopeptidase, type Ichromosome CDS1020331 861 + 0.416957
miaA SP_0671 tRNA isopentenylpyrophosphate transferasechromosome CDS646310 885 + 0.453107
pheS SP_0579 phenylalanyl-tRNA synthetase, alpha subunitchromosome CDS547769 1047 + 0.454632
pnp SP_0588 polyribonucleotide nucleotidyltransferasechromosome CDS557963 2214 + 0.443993
prfA SP_1020 peptide chain release factor 1chromosome CDS963452 1080 + 0.449074
prfB SP_0755 peptide chain release factor 2, programmed frameshiftchromosome CDS713703 1095 + 0.425571
prfC SP_0439 peptide chain release factor 3chromosome CDS412442 1545 + 0.461489
prmA SP_1782 ribosomal protein L11 methyltransferasechromosome CDS1700320 951 - 0.479495
proS SP_0264 prolyl-tRNA synthetasechromosome CDS236246 1854 + 0.43096
pth SP_0005 peptidyl-tRNA hydrolasechromosome CDS4382 570 + 0.336842
queA SP_1416 S-adenosylmethionine:tRNAribosyltransferase-isom erasechromosome CDS1334625 1029 + 0.474247
rbfA SP_0557 ribosome-binding factor Achromosome CDS526251 351 + 0.424501
rimM SP_0778 16S rRNA processing protein RimMchromosome CDS733725 519 + 0.404624
rluB SP_1874 ribosomal large subunit pseudouridine synthase Bchromosome CDS1778694 723 - 0.460581
rluD SP_0929 ribosomal large subunit pseudouridine synthase Dchromosome CDS881298 888 + 0.445946
rnpA SP_2042 ribonuclease P protein componentchromosome CDS1947360 372 - 0.38172
rplA SP_0631 ribosomal protein L1chromosome CDS597427 690 + 0.407246
rplB SP_0212 ribosomal protein L2chromosome CDS195155 834 + 0.447242
rplC SP_0209 ribosomal protein L3chromosome CDS193567 627 + 0.430622
rplD SP_0210 ribosomal protein L4chromosome CDS194218 624 + 0.434295
rplE SP_0221 ribosomal protein L5chromosome CDS199114 543 + 0.40884
rplF SP_0225 ribosomal protein L6chromosome CDS200818 537 + 0.402235
rplI SP_2204 ribosomal protein L9chromosome CDS2124559 453 - 0.364238
rplJ SP_1355 ribosomal protein L10chromosome CDS1275058 501 - 0.431138
rplK SP_0630 ribosomal protein L11chromosome CDS596795 426 + 0.413146
rplL SP_1354 ribosomal protein L7/L12chromosome CDS1274614 369 - 0.406504
rplM SP_0294 ribosomal protein L13chromosome CDS272052 447 + 0.400447
rplN SP_0219 ribosomal protein L14chromosome CDS198339 369 + 0.441734
rplO SP_0229 ribosomal protein L15chromosome CDS202647 441 + 0.414966
rplP SP_0216 ribosomal protein L16chromosome CDS197399 414 + 0.444444
rplQ SP_0237 ribosomal protein L17chromosome CDS207449 387 + 0.416021
rplR SP_0226 ribosomal protein L18chromosome CDS201438 357 + 0.456583
rplS SP_1293 ribosomal protein L19chromosome CDS1227880 348 - 0.428161
rplT SP_0961 ribosomal protein L20chromosome CDS908157 360 + 0.411111
rplU SP_1105 ribosomal protein L21chromosome CDS1037216 315 + 0.384127
rplV SP_0214 ribosomal protein L22chromosome CDS196385 345 + 0.417391
rplW SP_0211 ribosomal protein L23chromosome CDS194841 297 + 0.363636
rplX SP_0220 ribosomal protein L24chromosome CDS198785 306 + 0.395425
rpmA SP_1107 ribosomal protein L27chromosome CDS1037916 285 + 0.42807
rpmB SP_0441 ribosomal protein L28chromosome CDS414869 189 + 0.391534
rpmC SP_0217 ribosomal protein L29chromosome CDS197822 207 + 0.357488
rpmD SP_0228 ribosomal protein L30chromosome CDS202320 183 + 0.377049
rpmE SP_1299 ribosomal protein L31chromosome CDS1231000 243 + 0.419753
rpmF SP_2134 ribosomal protein L32chromosome CDS2045817 183 + 0.409836
rpmG-1 SP_0973 ribosomal protein L33chromosome CDS919302 150 + 0.36
rpmG-2 SP_2009 ribosomal protein L33chromosome CDS1915512 153 - 0.405229
rpmG-3 SP_2135 ribosomal protein L33chromosome CDS2046015 150 + 0.373333
rpmH SP_1993 ribosomal protein L34chromosome CDS1896650 135 - 0.466667
rpmI SP_0960 ribosomal protein L35chromosome CDS907905 201 + 0.412935
rpmJ SP_0233 ribosomal protein L36chromosome CDS205559 117 + 0.376068
rpsA SP_0862 ribosomal protein S1chromosome CDS808189 1203 + 0.408978
rpsB SP_2215 ribosomal protein S2chromosome CDS2134264 780 - 0.421795
rpsC SP_0215 ribosomal protein S3chromosome CDS196742 654 + 0.429664
rpsD SP_0085 ribosomal protein S4chromosome CDS90980 612 + 0.433007
rpsE SP_0227 ribosomal protein S5chromosome CDS201812 495 + 0.430303
rpsF SP_1541 ribosomal protein S6chromosome CDS1449349 291 - 0.38488
rpsG SP_0272 ribosomal protein S7chromosome CDS247538 471 + 0.443737
rpsH SP_0224 ribosomal protein S8chromosome CDS200228 399 + 0.390977
rpsI SP_0295 ribosomal protein S9chromosome CDS272517 393 + 0.447837
rpsJ SP_0208 ribosomal protein S10chromosome CDS193042 309 + 0.420712
rpsK SP_0235 ribosomal protein S11chromosome CDS206076 384 + 0.4375
rpsL SP_0271 ribosomal protein S12chromosome CDS247105 414 + 0.429952
rpsM SP_0234 ribosomal protein S13chromosome CDS205693 366 + 0.423497
rpsN SP_0222 ribosomal protein S14chromosome CDS199674 270 + 0.444444
rpsO SP_1626 ribosomal protein S15chromosome CDS1528268 270 - 0.418519
rpsP SP_0775 ribosomal protein S16chromosome CDS731798 273 + 0.399267
rpsQ SP_0218 ribosomal protein S17chromosome CDS198053 261 + 0.386973
rpsR SP_1539 ribosomal protein S18chromosome CDS1448596 240 - 0.4125
rpsS SP_0213 ribosomal protein S19chromosome CDS196092 282 + 0.400709
rpsT SP_0838 ribosomal protein S20chromosome CDS786386 237 - 0.379747
rpsU SP_1414 ribosomal protein S21chromosome CDS1333451 177 - 0.372881
rsmB SP_1734 rRNA methyltransferase RsmBchromosome CDS1637430 1314 - 0.4414
rsuA-1 SP_0280 ribosomal small subunit pseudouridine synthase Achromosome CDS257589 723 + 0.4426
rsuA-2 SP_0680 ribosomal small subunit pseudouridine synthase Achromosome CDS652792 726 - 0.433884
serS SP_0411 seryl-tRNA synthetasechromosome CDS390795 1275 - 0.443137
tgt SP_2058 queuine tRNA-ribosyltransferasechromosome CDS1959608 1143 - 0.446194
thrS SP_1631 threonyl-tRNA synthetasechromosome CDS1530556 1944 + 0.454218
trmD SP_0779 tRNA (guanine-N1)-methyltransferasechromosome CDS734233 720 + 0.429167
trmU SP_0118 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS121058 1122 + 0.483957
trpS SP_2229 tryptophanyl-tRNA synthetasechromosome CDS2147602 1026 - 0.387914
truA SP_1599 tRNA pseudouridine synthase Achromosome CDS1502436 750 - 0.444
truB SP_1212 tRNA pseudouridine synthase Bchromosome CDS1141941 879 - 0.452787
tsf SP_2214 translation elongation factor Tschromosome CDS2133145 1041 - 0.412104
tuf SP_1489 translation elongation factor Tuchromosome CDS1399336 1197 - 0.442774
tyrS SP_2100 tyrosyl-tRNA synthetasechromosome CDS2009308 1257 + 0.438345
valS SP_0568 valyl-tRNA synthetasechromosome CDS532605 2652 + 0.464555
yfiA SP_2206 ribosomal subunit interface proteinchromosome CDS2127117 549 - 0.340619