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2024-05-03 21:26:32

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Shigella flexneri 2a str. 2457T, 2457T

Number of genes found: 179

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Shigella flexneri 2a str. 2457T, 2457T
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA S1083 hypothetical proteinchromosome CDS1064065 387 - 0.537468
NA S1534 hypothetical proteinchromosome CDS1493507 393 - 0.506361
NA S2751 putative ATP synthase beta subunitchromosome CDS2641023 741 - 0.547908
alaS S2911 alanyl-tRNA synthetasechromosome CDS2787515 2631 - 0.537438
ansA S1571 cytoplasmic L-asparaginase Ichromosome CDS1529251 1017 - 0.508358
ansB S3157 periplasmic L-asparaginase IIchromosome CDS3033957 1047 - 0.52531
argS S2007 arginine tRNA synthetasechromosome CDS1930222 1734 + 0.529988
asnS S0991 asparagine tRNA synthetasechromosome CDS976776 1401 - 0.528194
aspS S1942 aspartate tRNA synthetasechromosome CDS1881818 1773 - 0.538071
cafA S3502 ribonuclease Gchromosome CDS3373980 1470 - 0.521088
cca S3302 tRNA nucleotidyl transferasechromosome CDS3179679 1239 + 0.561743
cysS S0465 cysteine tRNA synthetasechromosome CDS472936 1386 + 0.547619
dbpA S1447 ATP-dependent RNA helicasechromosome CDS1410534 1368 + 0.516082
deaD S3420 inducible ATP-independent RNA helicasechromosome CDS3289294 1941 - 0.555384
def S3543 peptide deformylasechromosome CDS3406690 510 + 0.462745
efp S4570 elongation factor P (EF-P)chromosome CDS4472279 567 + 0.497355
fmt S3544 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferasechromosome CDS3407214 948 + 0.525316
frr S0165 ribosome releasing factorchromosome CDS183303 558 + 0.508961
ftsJ S3437 cell division proteinchromosome CDS3310335 630 - 0.501587
fusA S4404 GTP-binding protein chain elongation factor EF-Gchromosome CDS4330060 1968 + 0.508638
glnS S0624 glutamine tRNA synthetasechromosome CDS640196 1665 - 0.524324
gltX S2605 glutamate tRNA synthetase, catalytic subunitchromosome CDS2498807 1416 - 0.525424
glyQ S4165 glycine tRNA synthetase, alpha subunitchromosome CDS4068237 912 + 0.558114
glyS S4166 glycine tRNA synthetase, beta subunitchromosome CDS4069158 2070 + 0.557005
gshB S3142 glutathione synthetasechromosome CDS3022370 951 + 0.535226
hemK S1299 possible protoporphyrinogen oxidasechromosome CDS1262690 834 + 0.551559
hisS S2732 histidine tRNA synthetasechromosome CDS2622342 1275 - 0.543529
ileS S0025 isoleucine tRNA synthetasechromosome CDS21345 2817 + 0.556621
infA S0884 protein chain initiation factor IF-1chromosome CDS872410 219 - 0.484018
infB S3426 protein chain initiation factor IF-2chromosome CDS3296665 2649 - 0.534541
infC S1631 protein chain initiation factor IF-3chromosome CDS1584854 435 + 0.473563
iucB S4055 siderophore biosynthesis proteinchromosome CDS3951736 948 - 0.564346
ksgA S0050 S-adenosylmethionine-6-N,N-adenosyl (rRNA) dimethyltransferasechromosome CDS50413 822 - 0.534063
lasT S4706 hypothetical proteinchromosome CDS4598644 687 + 0.502183
leuS S0661 leucine tRNA synthetasechromosome CDS671969 2583 + 0.533875
lysS S3075 lysine tRNA synthetasechromosome CDS2959661 1518 - 0.528986
map S0161 methionine aminopeptidasechromosome CDS179143 795 - 0.50566
miaA S4594 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferasechromosome CDS4496230 951 + 0.534175
pcnB S0138 poly(A) polymerase Ichromosome CDS148998 1365 - 0.557509
pheS S1634 phenylalanine tRNA synthetase, alpha-subunitchromosome CDS1586441 984 + 0.539634
pnp S3422 polynucleotide phosphorylasechromosome CDS3292356 2205 - 0.535147
prfA S1298 peptide chain release factor RF-1chromosome CDS1261608 1083 + 0.530009
prfB S3076 peptide chain release factor RF-2chromosome CDS2961188 1099 - 0.532302
prfC S4678 peptide chain release factor RF-3chromosome CDS4568436 1590 + 0.535849
prfH S0305 probable peptide chain release factorchromosome CDS304523 456 + 0.563596
prmA S3514 methylase for 50S ribosomal subunit protein L11chromosome CDS3386724 882 + 0.544218
proS S0187 proline tRNA synthetasechromosome CDS207442 1719 - 0.544503
pth S1291 peptidyl-tRNA hydrolasechromosome CDS1254525 585 - 0.500855
queA S0350 probable S-adenosylmethionine:tRNA ribosyltransferase-isomerasechromosome CDS353645 1071 + 0.539683
rbfA S3425 ribosome-binding factor Achromosome CDS3296100 402 - 0.529851
relE S1669 hypothetical proteinchromosome CDS1620096 288 - 0.46875
rhlB S3906 putative ATP-dependent RNA helicasechromosome CDS3799099 1266 + 0.524487
rhlE S0788 putative ATP-dependent RNA helicasechromosome CDS769856 1221 + 0.553645
rimJ S1150 ribosomal-protein-alanine acetyltransferasechromosome CDS1116215 585 + 0.495726
rimK S0848 ribosomal protein S6 modification proteinchromosome CDS833540 903 + 0.555925
rimL S1491 ribosomal-protein-serine acetyltransferasechromosome CDS1453348 537 + 0.439479
rmf S1019 ribosome modulation factorchromosome CDS1006747 168 + 0.547619
rna S0535 RNase Ichromosome CDS545935 825 - 0.509091
rnd S1539 RNase Dchromosome CDS1499240 1116 + 0.543011
rne S1168 RNase Echromosome CDS1131785 3183 - 0.558278
rnpA S4011 RNase P, protein component; protein C5chromosome CDS3906329 360 + 0.561111
rph S4086 RNase PHchromosome CDS3988393 717 + 0.563459
rplA S3678 50S ribosomal subunit protein L1chromosome CDS3573883 705 - 0.513475
rplB S4413 50S ribosomal subunit protein L2chromosome CDS4336957 822 + 0.526764
rplC S4410 50S ribosomal subunit protein L3chromosome CDS4335395 630 + 0.514286
rplD S4411 50S ribosomal subunit protein L4chromosome CDS4336035 606 + 0.529703
rplE S4422 50S ribosomal subunit protein L5chromosome CDS4340883 540 + 0.498148
rplF S4425 50S ribosomal subunit protein L6chromosome CDS4342181 534 + 0.524345
rplI S4628 50S ribosomal subunit protein L9chromosome CDS4522545 450 + 0.497778
rplJ S3677 50S ribosomal subunit protein L10chromosome CDS3572973 498 - 0.524096
rplK S3679 50S ribosomal subunit protein L11chromosome CDS3574591 429 - 0.522144
rplL S3676 50S ribosomal subunit protein L7/L12chromosome CDS3572541 366 - 0.461749
rplM S3486 50S ribosomal subunit protein L13chromosome CDS3356178 429 - 0.503497
rplN S4420 50S ribosomal subunit protein L14chromosome CDS4340172 372 + 0.510753
rplO S4429 50S ribosomal subunit protein L15chromosome CDS4343782 435 + 0.535632
rplP S4417 50S ribosomal subunit protein L16chromosome CDS4339152 411 + 0.518248
rplQ S4436 50S ribosomal subunit protein L17chromosome CDS4348322 384 + 0.536458
rplR S4426 50S ribosomal subunit protein L18chromosome CDS4342724 354 + 0.536723
rplS S2843 50S ribosomal subunit protein L19chromosome CDS2737468 348 - 0.482759
rplT S1633 50S ribosomal subunit protein L20/regulatorchromosome CDS1585635 357 + 0.481793
rplU S3444 50S ribosomal subunit protein L21chromosome CDS3316440 312 - 0.483974
rplV S4415 50S ribosomal subunit protein L22chromosome CDS4338088 333 + 0.495495
rplW S4412 50S ribosomal subunit protein L23chromosome CDS4336637 303 + 0.481848
rplX S4421 50S ribosomal subunit protein L24chromosome CDS4340554 315 + 0.460317
rplY S2401 50S ribosomal subunit protein L25chromosome CDS2285174 285 + 0.498246
rpmA S3443 50S ribosomal subunit protein L27chromosome CDS3316162 258 - 0.496124
rpmB S4092 50S ribosomal subunit protein L28chromosome CDS3993269 237 + 0.531646
rpmC S4418 50S ribosomal subunit protein L29chromosome CDS4339562 192 + 0.536458
rpmD S4428 50S ribosomal subunit protein L30chromosome CDS4343599 180 + 0.494444
rpmE S3733 50S ribosomal subunit protein L31chromosome CDS3630915 213 - 0.488263
rpmF S1173 50S ribosomal subunit protein L32chromosome CDS1137976 174 + 0.54023
rpmG S4093 50S ribosomal subunit protein L33chromosome CDS3993526 168 + 0.39881
rpmH S4010 50S ribosomal subunit protein L34chromosome CDS3906172 141 + 0.51773
rpmI S1632 50S ribosomal subunit protein Achromosome CDS1585385 198 + 0.494949
rpmJ S4431 50S ribosomal subunit protein L36chromosome CDS4345587 117 + 0.478632
rpsA S0971 30S ribosomal subunit protein S1chromosome CDS949755 1674 + 0.510753
rpsB S0162 30S ribosomal subunit protein S2chromosome CDS180305 726 + 0.511019
rpsC S4416 30S ribosomal subunit protein S3chromosome CDS4338438 702 + 0.507123
rpsD S4434 30S ribosomal subunit protein S4chromosome CDS4346658 609 + 0.509031
rpsE S4427 30S ribosomal subunit protein S5chromosome CDS4343092 504 + 0.498016
rpsF S4625 30S ribosomal subunit protein S6chromosome CDS4521555 396 + 0.527778
rpsG S4403 30S ribosomal subunit protein S7chromosome CDS4329345 471 + 0.496815
rpsH S4424 30S ribosomal subunit protein S8, and regulatorchromosome CDS4341776 393 + 0.501272
rpsI S3485 30S ribosomal subunit protein S9chromosome CDS3355770 393 - 0.524173
rpsJ S4409 30S ribosomal subunit protein S10chromosome CDS4335051 312 + 0.554487
rpsK S4433 30S ribosomal subunit protein S11chromosome CDS4346223 390 + 0.515385
rpsL S4402 30S ribosomal subunit protein S12chromosome CDS4328874 375 + 0.533333
rpsM S4432 30S ribosomal subunit protein S13chromosome CDS4345850 357 + 0.518207
rpsN S4423 30S ribosomal subunit protein S14chromosome CDS4341437 306 + 0.526144
rpsO S3423 30S ribosomal subunit protein S15chromosome CDS3294738 270 - 0.514815
rpsP S2846 30S ribosomal subunit protein S16chromosome CDS2739222 249 - 0.514056
rpsQ S4419 30S ribosomal subunit protein S17chromosome CDS4339753 255 + 0.47451
rpsR S4627 30S ribosomal subunit protein S18chromosome CDS4522276 228 + 0.526316
rpsS S4414 30S ribosomal subunit protein S19chromosome CDS4337795 279 + 0.491039
rpsT S0022 30S ribosomal subunit protein S20chromosome CDS19769 186 - 0.456989
rpsU S3311 30S ribosomal subunit protein S21chromosome CDS3188482 216 + 0.518519
rsuA S2399 16S pseudouridylate 516 synthasechromosome CDS2282444 696 - 0.533046
selB S4140 selenocysteinyl-tRNA-specific translation factorchromosome CDS4041059 1845 + 0.56206
serS S0893 serine tRNA synthetasechromosome CDS885647 1293 + 0.527456
sfhB S2829 ftsH mutation suppressorchromosome CDS2724332 981 + 0.529052
smpA S2854 small membrane protein Achromosome CDS2746967 153 + 0.470588
spoU S4078 putative RNA methylasechromosome CDS3979737 690 - 0.552174
srmB S2811 ATP-dependent RNA helicasechromosome CDS2703555 1335 + 0.549064
sun S3545 hypothetical proteinchromosome CDS3408207 1290 + 0.5
tgt S0351 tRNA-guanine transglycosylasechromosome CDS354770 1128 + 0.507092
thrS S1630 threonine tRNA synthetasechromosome CDS1582814 1929 + 0.498186
trmA S3697 tRNA (uracil-5-)-methyltransferasechromosome CDS3589937 1101 + 0.510445
trmD S2844 tRNA methyltransferase; tRNA (guanine-7-)-methyltransferasechromosome CDS2737857 768 - 0.532552
trpS S4360 tryptophan tRNA synthetasechromosome CDS4289858 1005 + 0.520398
truA S2529 pseudouridylate synthase Ichromosome CDS2422393 813 - 0.555966
truB S3424 tRNA pseudouridine 5S synthasechromosome CDS3295156 945 - 0.520635
tsf S0163 protein chain elongation factor EF-Tschromosome CDS181288 852 + 0.496479
tufA S4405 protein chain elongation factor EF-Tu (duplicate of tufB)chromosome CDS4332098 1185 + 0.531646
tufB S3682 protein chain elongation factor EF-Tuchromosome CDS3576338 1185 - 0.532489
tyrS S1794 tyrosine tRNA synthetasechromosome CDS1732304 1275 - 0.517647
valS S4492 valine tRNA synthetasechromosome CDS4395931 2856 + 0.547619
yabO S0055 hypothetical proteinchromosome CDS57100 660 - 0.542424
yadB S0139 putative tRNA synthetasechromosome CDS150455 927 - 0.535059
yadP S0142 hypothetical proteinchromosome CDS152770 540 - 0.559259
yaeJ S0184 hypothetical proteinchromosome CDS205264 423 + 0.541371
ybfG S2467 putative transformylasechromosome CDS2360657 1551 + 0.513217
ybjF S0855 putative enzymechromosome CDS840092 1128 + 0.546986
yceC S1170 hypothetical proteinchromosome CDS1135549 960 + 0.515625
ycfB S1235 hypothetical proteinchromosome CDS1196744 1152 - 0.537326
ychF S1290 putative GTP-binding proteinchromosome CDS1253317 1092 - 0.510073
yciH S1369 hypothetical proteinchromosome CDS1336805 330 + 0.49697
yciL S1356 hypothetical proteinchromosome CDS1321006 873 + 0.542955
yciO S1355 hypothetical proteinchromosome CDS1320249 657 + 0.496195
yeiP S2387 putative elongation factorchromosome CDS2267851 828 + 0.507246
yfcB S2542 putative adenine-specific methylasechromosome CDS2435088 1266 - 0.511848
yfhC S2778 putative deaminasechromosome CDS2675813 537 - 0.540037
yfiA S2835 putative yhbH sigma 54 modulatorchromosome CDS2730439 342 + 0.461988
yfiF S2816 hypothetical proteinchromosome CDS2707976 1038 - 0.565511
yfjA S2845 hypothetical proteinchromosome CDS2738655 549 - 0.48816
ygcA S2992 putative enzymechromosome CDS2867389 1302 - 0.515361
ygjO S3331 putative enzymechromosome CDS3213641 1137 - 0.53562
yhaR S3365 hypothetical proteinchromosome CDS3242345 390 - 0.525641
yhbH S3461 probable sigma-54 modulation proteinchromosome CDS3329459 288 + 0.444444
yhbY S3438 hypothetical proteinchromosome CDS3311090 294 + 0.486395
yhdG S3515 putative dehydrogenasechromosome CDS3388057 843 + 0.520759
yibK S4123 hypothetical proteinchromosome CDS4020933 474 - 0.550633
yicN S3970 hypothetical proteinchromosome CDS3863814 480 - 0.51875
yihZ S3787 hypothetical proteinchromosome CDS3683122 438 - 0.552511
yjbC S3635 hypothetical proteinchromosome CDS3517246 873 - 0.520046
yjbN S3574 hypothetical proteinchromosome CDS3443535 1020 + 0.532353
yjeA S4578 putative lysyl-tRNA synthetasechromosome CDS4479223 978 + 0.522495
yjeJ S4566 hypothetical proteinchromosome CDS4469178 870 - 0.454023
yjfH S4603 hypothetical proteinchromosome CDS4506253 732 + 0.560109
yjgF S4509 hypothetical proteinchromosome CDS4408360 426 + 0.507042
yjgH S4504 hypothetical proteinchromosome CDS4406103 396 + 0.474747
yjiI S4443 hypothetical proteinchromosome CDS4353240 687 - 0.487627
yjjT S4674 putative enzymechromosome CDS4565691 1032 - 0.546512
yleA S0643 hypothetical proteinchromosome CDS652997 1425 + 0.540351
yliG S0828 hypothetical proteinchromosome CDS817025 1326 - 0.527149
ymfC S1237 hypothetical proteinchromosome CDS1198375 624 - 0.516026
yohI S2354 putative regulator proteinchromosome CDS2231683 948 - 0.543249
yqcB S2998 hypothetical proteinchromosome CDS2876691 783 - 0.535121
yrdC S3538 hypothetical proteinchromosome CDS3403808 573 - 0.52356
yrfH S4344 hypothetical proteinchromosome CDS4273740 402 - 0.532338