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2024-05-06 04:01:35

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Xanthomonas oryzae pv. oryzae KACC10331, KACC10331

Number of genes found: 170

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Xanthomonas oryzae pv. oryzae KACC10331, KACC10331
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA XOO3388 tRNA/rRNA methyltransferasechromosome CDS3607458 1062 - 0.680791
NA XOO0218 conserved hypothetical proteinchromosome CDS221584 612 + 0.622549
NA XOO0348 pseudouridylate synthasechromosome CDS363683 873 - 0.662085
NA XOO0597 conserved hypothetical proteinchromosome CDS622373 477 + 0.656184
NA XOO2727 aminoacyl-tRNA synthetase:glutamyl homologchromosome CDS2888305 900 + 0.713333
NA XOO2208 conserved hypothetical proteinchromosome CDS2320005 513 + 0.682261
NA XOO0346 peptidyl-tRNA hydrolasechromosome CDS362521 531 - 0.681733
NA XOO2951 conserved hypothetical proteinchromosome CDS3161653 306 + 0.611111
NA XOO0578 conserved hypothetical proteinchromosome CDS600291 564 - 0.714539
NA XOO2766 conserved hypothetical proteinchromosome CDS2927961 1653 + 0.649123
NA XOO4531 pseudouridylate synthasechromosome CDS4827817 603 + 0.669983
NA XOO1552 pseudouridylate synthasechromosome CDS1582881 723 + 0.630705
NA XOO3130 conserved hypothetical proteinchromosome CDS3361758 288 - 0.621528
NA XOO1283 sigma-54 modulation proteinchromosome CDS1315672 318 - 0.619497
NA XOO2161 pseudouridylate synthasechromosome CDS2265926 1701 - 0.698413
NA XOO1796 hypothetical proteinchromosome CDS1889147 1083 + 0.573407
NA XOO1903 conserved hypothetical proteinchromosome CDS2006608 744 + 0.635753
NA XOO2907 conserved hypothetical proteinchromosome CDS3115584 453 - 0.611479
NA XOO4206 tRNA/rRNA methyltransferasechromosome CDS4483352 477 - 0.622642
NA XOO1910 conserved hypothetical proteinchromosome CDS2013825 381 + 0.627297
NA XOO2710 tRNA/rRNA methyltransferasechromosome CDS2870122 915 - 0.657924
NA XOO0601 putative transposasechromosome CDS628998 570 + 0.578947
NA XOO2084 tRNA/rRNA methyltransferasechromosome CDS2189753 768 + 0.654948
NA XOO1002 pseudouridylate synthasechromosome CDS1027764 621 - 0.645733
NA XOO4344 conserved hypothetical proteinchromosome CDS4621687 543 - 0.6593
NA XOO0421 conserved hypothetical proteinchromosome CDS427652 1005 + 0.676617
NA XOO1302 nucleotidyl transferasechromosome CDS1331822 711 - 0.632911
NA XOO2936 Isopentenyl transferasechromosome CDS3142899 750 - 0.604
NA XOO1859 RNA methyltransferasechromosome CDS1961000 1440 + 0.647222
NA XOO3787 conserved hypothetical proteinchromosome CDS4035348 999 + 0.672673
NA XOO3720 conserved hypothetical proteinchromosome CDS3976574 951 + 0.670873
NA XOO3272 conserved hypothetical proteinchromosome CDS3508377 1401 - 0.624554
NA XOO3693 pseudouridylate synthasechromosome CDS3955560 861 - 0.679443
NA XOO4098 conserved hypothetical proteinchromosome CDS4379652 495 - 0.638384
NA XOO2407 initiation factor eIF-2Bchromosome CDS2567529 1350 - 0.675556
NA XOO3022 putative type III effector HolPsyAEchromosome CDS3243039 2088 + 0.660441
NA XOO2597 conserved hypothetical proteinchromosome CDS2747247 624 + 0.599359
alaS XOO2939 alanyl-tRNA synthetasechromosome CDS3146703 2649 - 0.628917
argA XOO2671 amino-acid acetyltransferasechromosome CDS2832760 861 - 0.644599
argS XOO0494 arginyl-tRNA synthetasechromosome CDS511259 1773 - 0.645234
asnS XOO2418 asparaginyl-tRNA synthetasechromosome CDS2580720 1395 + 0.632975
aspG XOO3619 asparaginasechromosome CDS3882856 639 + 0.627543
aspS XOO1656 aspartyl-tRNA synthetasechromosome CDS1719500 1845 + 0.650406
avrXa7 XOO4255 avirulence/virulence proteinchromosome CDS4530410 3243 + 0.680851
cca XOO3900 tRNA nucleotidyltransferasechromosome CDS4159740 2142 + 0.638655
codA XOO3979 cytosine deaminasechromosome CDS4251252 456 - 0.635965
cysS XOO2678 cysteinyl-tRNA synthetasechromosome CDS2840038 1431 + 0.653389
dbpA XOO2716 ATP-dependent RNA helicasechromosome CDS2876181 1449 + 0.665977
deaD XOO1550 ATP-dependent RNA helicasechromosome CDS1578167 1905 + 0.670341
def XOO0585 polypeptide deformylasechromosome CDS608579 552 + 0.621377
def XOO1075 peptide deformylasechromosome CDS1098264 639 + 0.589984
efP XOO2705 elongation factor Pchromosome CDS2865111 726 - 0.628099
fmt XOO0586 10-Formyltetrahydrofolate:L-methionyl-tRNAN-form yltransferasechromosome CDS609314 1134 + 0.686949
frr XOO1973 ribosome recycling factorchromosome CDS2075040 558 - 0.612903
ftsJ XOO2950 cell division proteinchromosome CDS3160955 675 - 0.634074
fusA XOO3588 elongation factor Gchromosome CDS3845846 2214 - 0.609304
gatAX XOO0975 Glu-tRNAGln amidotransferase A subunitchromosome CDS1006807 438 + 0.66895
glnS XOO3713 glutaminyl-tRNA synthetasechromosome CDS3970031 1740 + 0.645402
gluS XOO1504 glutamyl-tRNA synthetasechromosome CDS1537282 1404 + 0.646724
glyQ XOO4399 glycyl-tRNA synthetase alpha chainchromosome CDS4677556 1041 - 0.648415
glyS XOO4398 glycyl-tRNA synthetase beta chainchromosome CDS4675029 2238 - 0.649687
gshB XOO1745 glutathione synthetasechromosome CDS1816905 972 - 0.677984
hemK XOO3644 protoporphyrinogen oxidasechromosome CDS3905458 846 - 0.692671
hisS XOO2251 histidyl-tRNA synthetasechromosome CDS2366098 1569 + 0.653282
hslR XOO1330 heat shock protein 15 homologchromosome CDS1356996 684 + 0.644737
ileS XOO1626 isoleucyl-tRNA synthetasechromosome CDS1671800 2832 + 0.653249
infA XOO2552 initiation factor IF-1chromosome CDS2701332 237 + 0.544304
infB XOO3218 protein chain initiation factor IF-2chromosome CDS3456053 2763 - 0.648208
infC XOO3186 initiation factor IF-3chromosome CDS3422394 480 - 0.597917
ksgA XOO3748 dimethyladenosine transferasechromosome CDS4003377 789 + 0.646388
leuS XOO3329 leucyl-tRNA synthetasechromosome CDS3561980 2643 - 0.652289
lysS XOO2409 lysyl-tRNA synthetasechromosome CDS2569590 963 - 0.666667
lysU XOO2872 lysyl-tRNA synthetase heat induciblechromosome CDS3084150 1587 - 0.661626
map XOO1983 methionine aminopeptidasechromosome CDS2085109 1086 + 0.592081
miaA XOO2947 tRNA delta(2)-isopentenylpyrophosphate transferasechromosome CDS3156948 1065 - 0.666667
pcnB XOO2366 polynucleotide adenyltransferasechromosome CDS2510180 1368 - 0.647661
pheS XOO3183 phenylalanyl-tRNA synthetase alpha chainchromosome CDS3420328 996 - 0.638554
pnp XOO3214 polynucleotide phosphorylasechromosome CDS3451814 2115 - 0.621277
prfA XOO3608 peptide chain release factor 1chromosome CDS3871985 1086 + 0.653775
prfB XOO2873 peptide chain release factor 2chromosome CDS3085871 990 - 0.637374
prfC XOO1815 peptide chain release factor 3chromosome CDS1908633 1605 - 0.639252
prmA XOO0552 ribosomal protein L11 methyltransferasechromosome CDS573761 1077 - 0.66481
proS XOO0809 prolyl-tRNA synthetasechromosome CDS826323 1788 - 0.653803
pth XOO3601 peptidyl tRNA hydrolasechromosome CDS3864888 615 - 0.634146
queA XOO2485 S-adenosylmethionine:tRNAribosyltransferase-isom erasechromosome CDS2635083 1185 - 0.675106
rbfA XOO3217 ribosomal-binding factor Achromosome CDS3455517 393 - 0.651399
rhlB XOO4301 ATP-dependent RNA helicasechromosome CDS4577310 1944 - 0.672325
rhlE XOO0133 ATP-dependent RNA helicasechromosome CDS134954 1290 - 0.686822
rhlE XOO0770 ATP-dependent RNA helicasechromosome CDS783828 1455 - 0.683849
rimJ XOO1754 ribosomal protein alanine acetyltransferasechromosome CDS1830531 624 + 0.650641
rimK XOO1210 ribosomal protein S6 modification proteinchromosome CDS1235339 1062 - 0.65725
rimM XOO1326 16S rRNA processing protein RimMchromosome CDS1352897 543 + 0.604052
rluC XOO3072 pseudouridylate synthasechromosome CDS3303279 987 - 0.662614
rluD XOO1597 ribosomal large subunit pseudouridine synthase Dchromosome CDS1640447 1008 + 0.698413
rnD XOO2742 ribonuclease Dchromosome CDS2906039 1251 + 0.650679
rne XOO3073 ribonuclease Echromosome CDS3304652 3714 + 0.656166
rng XOO3315 ribonuclease Gchromosome CDS3546927 1503 - 0.644045
rnpA XOO4637 ribonuclease P, protein componentchromosome CDS4940625 480 - 0.652083
rpfI XOO2876 regulatory proteinchromosome CDS3089490 201 + 0.636816
rph XOO1143 ribonuclease PHchromosome CDS1167063 918 - 0.667756
rplA XOO3594 50S ribosomal protein L1chromosome CDS3859493 699 - 0.643777
rplB XOO3580 50S ribosomal protein L2chromosome CDS3840096 828 - 0.634058
rplC XOO3584 50S ribosomal protein L3chromosome CDS3841848 651 - 0.615975
rplD XOO3582 50S ribosomal protein L4chromosome CDS3841230 555 - 0.618018
rplE XOO3570 50S ribosomal protein L5chromosome CDS3836565 543 - 0.565378
rplF XOO3568 50S ribosomal protein L6chromosome CDS3835094 528 - 0.617424
rplI XOO2414 50S ribosomal protein L9chromosome CDS2578431 450 - 0.642222
rplJ XOO3593 50S ribosomal protein L10chromosome CDS3858414 534 - 0.642322
rplK XOO3596 50S ribosomal protein L11chromosome CDS3860195 429 - 0.60373
rplL XOO3592 50S ribosomal protein L7/L12chromosome CDS3857991 369 - 0.601626
rplM XOO4153 50S ribosomal protein L13chromosome CDS4431367 429 - 0.610723
rplN XOO3573 50S ribosomal protein L14chromosome CDS3837452 369 - 0.601626
rplO XOO3563 50S ribosomal protein L15chromosome CDS3833313 459 - 0.625272
rplP XOO3576 50S ribosomal protein L16chromosome CDS3838301 414 - 0.618357
rplQ XOO3557 50S ribosomal protein L17chromosome CDS3828590 384 - 0.625
rplR XOO3567 50S ribosomal protein L18chromosome CDS3834646 273 - 0.641026
rplS XOO1328 50S ribosomal protein L19chromosome CDS1354312 504 + 0.619048
rplT XOO3184 50S ribosomal protein L20chromosome CDS3421578 360 - 0.602778
rplU XOO1620 50S ribosomal protein L21chromosome CDS1666618 321 + 0.607477
rplV XOO3578 50S ribosomal protein L22chromosome CDS3839472 342 - 0.587719
rplW XOO3581 50S ribosomal protein L23chromosome CDS3840934 309 - 0.566343
rplX XOO3571 50S ribosomal protein L24chromosome CDS3837119 318 - 0.610063
rplY XOO3602 50S ribosomal protein L25chromosome CDS3865524 636 - 0.602201
rpmA XOO1621 50S ribosomal protein L27chromosome CDS1666951 261 + 0.624521
rpmC XOO3575 50S ribosomal protein L29chromosome CDS3838116 186 - 0.596774
rpmD XOO3564 50S ribosomal protein L30chromosome CDS3833761 192 - 0.583333
rpmE XOO1153 50S ribosomal protein L31chromosome CDS1176946 279 + 0.566308
rpmG XOO4558 50S ribosomal protein L33chromosome CDS4858224 168 + 0.494048
rpmI XOO3185 50S ribosomal protein L35chromosome CDS3421948 198 - 0.616162
rpsA XOO2180 30S ribosomal protein S1chromosome CDS2290796 1686 + 0.61032
rpsB XOO1977 30S ribosomal protein S2chromosome CDS2078110 1128 - 0.623227
rpsC XOO3577 30S ribosomal protein S3chromosome CDS3838720 735 - 0.598639
rpsD XOO3559 30S ribosomal protein S4chromosome CDS3830207 627 - 0.599681
rpsE XOO3566 30S ribosomal protein S5chromosome CDS3833945 543 - 0.627993
rpsF XOO2416 30S ribosomal protein S6chromosome CDS2579389 432 - 0.611111
rpsI XOO4152 30S ribosomal protein S9chromosome CDS4430971 393 - 0.636132
rpsJ XOO3585 30S ribosomal protein S10chromosome CDS3842510 315 - 0.587302
rpsK XOO3560 30S ribosomal protein S11chromosome CDS3830849 156 - 0.608974
rpsL XOO3589 30S ribosomal protein S12chromosome CDS3848582 492 - 0.599594
rpsM XOO3561 30S ribosomal protein S13chromosome CDS3831252 405 - 0.619753
rpsN XOO3569 30S ribosomal protein S14chromosome CDS3836241 306 - 0.591503
rpsO XOO3215 30S ribosomal protein S15chromosome CDS3454094 405 - 0.590123
rpsP XOO1325 30S ribosomal protein S16chromosome CDS1352497 387 + 0.645995
rpsQ XOO3574 30S ribosomal protein S17chromosome CDS3837835 270 - 0.57037
rpsR XOO2415 30S ribosomal protein S18chromosome CDS2579147 231 - 0.575758
rpsS XOO3579 30S ribosomal protein S19chromosome CDS3839820 270 - 0.562963
rpsT XOO1623 30S ribosomal protein S20chromosome CDS1668588 270 - 0.603704
rsmC XOO0702 ribosomal RNA small subunit methyltransferase Cchromosome CDS723529 1098 + 0.680328
rsuA XOO0703 ribosomal small subunit pseudouridylate synthasechromosome CDS724623 714 + 0.638655
serS XOO2116 seryl-tRNA synthetasechromosome CDS2213751 1401 + 0.595289
smpA XOO2026 outer membrane proteinchromosome CDS2125178 396 - 0.608586
sun XOO0587 Sunchromosome CDS610339 1422 + 0.69339
tdcF XOO1226 TdcFchromosome CDS1249524 468 + 0.617521
tgt XOO2484 queuine tRNA-ribosyltransferasechromosome CDS2633868 1146 - 0.650087
thrS XOO3187 threonyl-tRNA synthetasechromosome CDS3422985 2016 - 0.627976
trmD XOO1327 tRNA (guanine-N1-)-methyltransferasechromosome CDS1353448 837 + 0.661888
trmU XOO2556 tRNA methyltransferasechromosome CDS2705301 1137 + 0.669305
trpS XOO0437 tryptophanyl-tRNA synthetasechromosome CDS444229 1290 + 0.623256
truA XOO3255 tRNA pseudouridine synthase Achromosome CDS3492842 774 - 0.661499
truB XOO3216 tRNA pseudouridine synthase Bchromosome CDS3454511 927 - 0.660194
tsf XOO1976 elongation factor Tschromosome CDS2077062 879 - 0.633675
tufB XOO3599 elongation factor Tuchromosome CDS3862032 1191 - 0.623006
tufB XOO3587 elongation factor Tuchromosome CDS3844606 1191 - 0.623006
tyrS XOO0515 tyrosyl-tRNA synthetasechromosome CDS531365 927 + 0.615965
tyrS XOO0514 tyrosyl-tRNA synthetasechromosome CDS530986 408 + 0.595588
valS XOO0831 valyl-tRNA synthetasechromosome CDS845612 2943 - 0.621135
ychF XOO3600 GTP-binding proteinchromosome CDS3863722 1092 - 0.620879
yeiP XOO2905 elongation factor Pchromosome CDS3114125 567 + 0.613757
yfcB XOO3262 adenine-specific methylasechromosome CDS3500112 927 - 0.650485
yjgF XOO1150 translation initiation inhibitorchromosome CDS1173292 381 + 0.645669