Gene list
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COG category: Translation, ribosomal structure and biogenesis
Organism: Salmonella typhimurium LT2, LT2; SGSC 1412; ATCC 700720
Number of genes found: 192
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Salmonella typhimurium LT2, LT2; SGSC 1412; ATCC 700720 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
STM0080 | putative outer membrane lipoprotein | chromosome | CDS | 93607 | 231 | + | 0.484848 | |
STM0926 | putative Fels-1 prophage minor tail protein | chromosome | CDS | 999070 | 2373 | + | 0.582385 | |
STM1548 | putativeS-adenosylmethionine:tRNA-ribosyltransfe rase-isomerase | chromosome | CDS | 1624913 | 1041 | + | 0.386167 | |
STM1549 | putative translation initiation inhibitor | chromosome | CDS | 1626005 | 390 | - | 0.497436 | |
STM1550 | putative cytoplasmic protein | chromosome | CDS | 1626565 | 285 | - | 0.421053 | |
STM1873 | putative periplasmic or exported protein | chromosome | CDS | 1968296 | 354 | - | 0.533898 | |
STM2133 | putative cytoplasmic protein | chromosome | CDS | 2225846 | 885 | + | 0.500565 | |
STM2534 | putative cytoplasmic protein | chromosome | CDS | 2673995 | 669 | + | 0.446936 | |
STM2545 | putative rRNA methylase | chromosome | CDS | 2683585 | 732 | - | 0.568306 | |
STM2566 | putative periplasmic protein | chromosome | CDS | 2712163 | 234 | + | 0.461538 | |
STM3521 | putative ribonucleoprotein related-protein | chromosome | CDS | 3683125 | 1554 | - | 0.60296 | |
STM3598 | putative L-asparaginase | chromosome | CDS | 3769992 | 1044 | - | 0.51341 | |
STM4450 | putative inner membrane protein | chromosome | CDS | 4691680 | 285 | + | 0.470175 | |
alaS | alanyl-tRNA synthetase | chromosome | CDS | 2971371 | 2631 | - | 0.549221 | |
ansA | cytoplasmic L-asparaginase I | chromosome | CDS | 1371798 | 1017 | - | 0.528024 | |
ansB | periplasmic L-asparaginase II | chromosome | CDS | 3265481 | 1047 | - | 0.526266 | |
argS | arginine tRNA synthetase | chromosome | CDS | 2002597 | 1734 | + | 0.551903 | |
asnS | asparagine tRNA synthetase | chromosome | CDS | 1091479 | 1401 | - | 0.551035 | |
aspS | aspartate tRNA synthetase | chromosome | CDS | 1995111 | 1773 | - | 0.566272 | |
cafA | RNase G | chromosome | CDS | 3539847 | 1470 | - | 0.527211 | |
cca | tRNA nucleotidyl transferase | chromosome | CDS | 3369221 | 1242 | + | 0.586151 | |
cysS | cysteine tRNA synthetase | chromosome | CDS | 599135 | 1386 | + | 0.549062 | |
dbpA | ATP-dependent RNA helicase | chromosome | CDS | 1748288 | 1374 | - | 0.55313 | |
deaD | cysteine sulfinate desulfinase | chromosome | CDS | 3446185 | 1941 | - | 0.579083 | |
def | peptide deformylase | chromosome | CDS | 3576936 | 510 | + | 0.511765 | |
efp | elongation factor P | chromosome | CDS | 4579610 | 567 | + | 0.522046 | |
fmt | 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase | chromosome | CDS | 3577461 | 948 | + | 0.548523 | |
frr | ribosome releasing factor | chromosome | CDS | 257148 | 558 | + | 0.510753 | |
ftsJ | 23S rRNA methyltransferase | chromosome | CDS | 3466728 | 627 | - | 0.515152 | |
fusA | protein chain elongation factor EF-G | chromosome | CDS | 3599558 | 2115 | - | 0.516785 | |
glnS | glutamine tRNA synthetase | chromosome | CDS | 747421 | 1668 | + | 0.534173 | |
gltX | glutamate tRNA synthetase, catalytic subunit | chromosome | CDS | 2530163 | 1416 | - | 0.552966 | |
glyQ | glycine tRNA synthetase, alpha subunit | chromosome | CDS | 3841849 | 912 | - | 0.558114 | |
glyS | glycine tRNA synthetase, beta subunit | chromosome | CDS | 3839770 | 2070 | - | 0.570048 | |
gshB | glutathione synthetase | chromosome | CDS | 3256939 | 948 | + | 0.545359 | |
hemK | putative protoporphyrinogen oxidase | chromosome | CDS | 1872498 | 834 | - | 0.58753 | |
hisS | histidine tRNA synthetase | chromosome | CDS | 2654871 | 1275 | - | 0.562353 | |
ileS | isoleucine tRNA synthetase | chromosome | CDS | 53855 | 2835 | + | 0.547795 | |
infA | protein chain initiation factor IF-1 | chromosome | CDS | 1030347 | 219 | - | 0.488584 | |
infB | protein chain initiation factor IF-2 | chromosome | CDS | 3453610 | 2679 | - | 0.554311 | |
infC | protein chain initiation factor IF-3 | chromosome | CDS | 1414242 | 435 | + | 0.473563 | |
ksgA | S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase; kasugamycin resistance | chromosome | CDS | 102663 | 822 | - | 0.524331 | |
lasT | putative tRNA/tRNA methyltransferase | chromosome | CDS | 4856722 | 687 | + | 0.525473 | |
leuS | leucine tRNA synthetase | chromosome | CDS | 709125 | 2583 | - | 0.557878 | |
ligT | 2'-5' RNA ligase | chromosome | CDS | 217751 | 531 | - | 0.629002 | |
lysS | constitutive lysine tRNA synthetase | chromosome | CDS | 3199219 | 1518 | - | 0.540843 | |
map | methionine aminopeptidase | chromosome | CDS | 253052 | 795 | - | 0.524528 | |
miaA | delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase | chromosome | CDS | 4603542 | 951 | + | 0.543638 | |
miaB | methylthiolation of isopentenylated A37 derivatives in rRNA | chromosome | CDS | 734487 | 1425 | - | 0.538947 | |
miaE | hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA | chromosome | CDS | 4713345 | 813 | + | 0.543665 | |
pcnB | poly(A) polymerase I | chromosome | CDS | 213874 | 1419 | - | 0.561663 | |
pheS | phenylalanine tRNA synthetase, alpha-subunit | chromosome | CDS | 1415678 | 984 | + | 0.538618 | |
pnp | polynucleotide phosphorylase | chromosome | CDS | 3449247 | 2136 | - | 0.562734 | |
prfA | peptide chain release factor RF-1 | chromosome | CDS | 1873331 | 1083 | - | 0.575254 | |
prfB | peptide chain release factor RF-2 | chromosome | CDS | 3200746 | 882 | - | 0.544218 | |
prfC | peptide chain release factor RF-3 | chromosome | CDS | 4813888 | 1590 | + | 0.543396 | |
prfH | putative peptide chain release factor | chromosome | CDS | 360203 | 615 | + | 0.55122 | |
prmA | methylation of 50S ribosomal subunit protein L11 | chromosome | CDS | 3553729 | 882 | + | 0.558957 | |
proS | proline tRNA synthetase | chromosome | CDS | 282467 | 1719 | - | 0.547411 | |
pth | peptidyl-tRNA hydrolase | chromosome | CDS | 1881093 | 609 | + | 0.512315 | |
queA | S-adenosylmethionine-tRNAribosyltransferase-isomerase | chromosome | CDS | 459560 | 1065 | + | 0.558685 | |
rbfA | ribosome-binding factor | chromosome | CDS | 3452988 | 402 | - | 0.529851 | |
rfbF | glucose-1-phosphate cytidylyltransferase | chromosome | CDS | 2173350 | 774 | - | 0.435401 | |
rhlB | putative helicase | chromosome | CDS | 4123427 | 1266 | - | 0.547393 | |
rhlE | putative ATP-dependent RNA helicase | chromosome | CDS | 885586 | 1365 | + | 0.58315 | |
rimJ | acetylation of N-terminal alanine of 30S ribosomal subunit protein S5 | chromosome | CDS | 1252507 | 585 | + | 0.511111 | |
rimK | ribosomal protein S6 modification protein | chromosome | CDS | 946561 | 903 | + | 0.563677 | |
rimL | acetyl transferase | chromosome | CDS | 1701042 | 540 | - | 0.503704 | |
rimM | 16S rRNA processing protein | chromosome | CDS | 2816073 | 549 | - | 0.500911 | |
rluA | 23S rRNA pseudouridylate 746 synthase | chromosome | CDS | 109331 | 660 | - | 0.571212 | |
rluC | 23S rRNA pseudouridylate synthase | chromosome | CDS | 1272131 | 960 | + | 0.553125 | |
rluD | pseudouridine synthase | chromosome | CDS | 2805547 | 981 | - | 0.53211 | |
rmf | ribosome modulation factor (involved in dimerization of 70S ribosomes) | chromosome | CDS | 1157641 | 168 | + | 0.535714 | |
rna | RNase I, cleaves phosphodiester bond between any two nucleotides | chromosome | CDS | 679989 | 807 | - | 0.547708 | |
rnd | RNase D | chromosome | CDS | 1914022 | 1128 | - | 0.550532 | |
rne | RNase E | chromosome | CDS | 1268354 | 3204 | - | 0.58427 | |
rnpA | RNase P | chromosome | CDS | 4045842 | 360 | + | 0.561111 | |
rph | RNase PH | chromosome | CDS | 3926679 | 717 | - | 0.549512 | |
rplA | 50S ribosomal subunit protein L1 | chromosome | CDS | 4363537 | 705 | + | 0.531915 | |
rplB | 50S ribosomal subunit protein L2 | chromosome | CDS | 3593803 | 822 | - | 0.53163 | |
rplC | 50S ribosomal subunit protein L3 | chromosome | CDS | 3595557 | 630 | - | 0.51746 | |
rplD | 50S ribosomal subunit protein L4 | chromosome | CDS | 3594941 | 606 | - | 0.531353 | |
rplE | 50S ribosomal subunit protein L5 | chromosome | CDS | 3590160 | 540 | - | 0.494444 | |
rplF | 50S ribosomal subunit protein L6 | chromosome | CDS | 3588868 | 534 | - | 0.516854 | |
rplI | 50S ribosomal subunit protein L9 | chromosome | CDS | 4631504 | 450 | + | 0.508889 | |
rplJ | 50S ribosomal subunit protein L10 | chromosome | CDS | 4364661 | 498 | + | 0.52008 | |
rplK | 50 S ribosomal subunit protein L11 | chromosome | CDS | 4363105 | 429 | + | 0.526807 | |
rplL | 50S ribosomal subunit protein L7/L12 | chromosome | CDS | 4365225 | 366 | + | 0.461749 | |
rplM | 50S ribosomal subunit protein L13 | chromosome | CDS | 3512814 | 429 | - | 0.512821 | |
rplN | 50S ribosomal subunit protein L14 | chromosome | CDS | 3591039 | 372 | - | 0.5 | |
rplO | 50S ribosomal subunit protein L15 | chromosome | CDS | 3587366 | 435 | - | 0.544828 | |
rplP | 50S ribosomal subunit protein L16 | chromosome | CDS | 3592019 | 411 | - | 0.523114 | |
rplQ | 50S ribosomal subunit protein L17 | chromosome | CDS | 3582877 | 384 | - | 0.544271 | |
rplR | 50S ribosomal subunit protein L18 | chromosome | CDS | 3588505 | 354 | - | 0.531073 | |
rplS | 50S ribosomal subunit protein L19 | chromosome | CDS | 2814873 | 348 | - | 0.485632 | |
rplT | 50S ribosomal subunit protein L20 | chromosome | CDS | 1415020 | 357 | + | 0.498599 | |
rplU | 50S ribosomal subunit protein L21 | chromosome | CDS | 3472778 | 312 | - | 0.490385 | |
rplV | 50S ribosomal subunit protein L22 | chromosome | CDS | 3593161 | 333 | - | 0.501502 | |
rplW | 50S ribosomal subunit protein L23 | chromosome | CDS | 3594642 | 303 | - | 0.491749 | |
rplX | 50S ribosomal subunit protein L24 | chromosome | CDS | 3590714 | 315 | - | 0.460317 | |
rplY | 50S ribosomal subunit protein L25 | chromosome | CDS | 2326433 | 285 | + | 0.512281 | |
rpmA | 50S ribosomal subunit protein L27 | chromosome | CDS | 3472501 | 258 | - | 0.496124 | |
rpmB | 50S ribosomal subunit protein L28 | chromosome | CDS | 3922226 | 237 | - | 0.518987 | |
rpmC | 50S ribosomal subunit protein L29 | chromosome | CDS | 3591828 | 192 | - | 0.53125 | |
rpmD | 50S ribosomal subunit protein L30 | chromosome | CDS | 3587804 | 180 | - | 0.505556 | |
rpmE | 50S ribosomal subunit protein L31 | chromosome | CDS | 4305763 | 213 | + | 0.488263 | |
rpmE2 | putative 50S ribosomal protein L31 (second copy) | chromosome | CDS | 526352 | 261 | + | 0.440613 | |
rpmF | 50S ribosomal subunit protein L32 | chromosome | CDS | 1275846 | 174 | + | 0.528736 | |
rpmG | 50S ribosomal subunit protein L33 | chromosome | CDS | 3922038 | 168 | - | 0.39881 | |
rpmH | 50S ribosomal subunit protein L34 | chromosome | CDS | 4045685 | 141 | + | 0.524823 | |
rpmI | 50S ribosomal subunit protein L35 | chromosome | CDS | 1414772 | 198 | + | 0.489899 | |
rpmJ | 50S ribosomal subunit protein X | chromosome | CDS | 3585879 | 117 | - | 0.478632 | |
rpmJ2 | putative 50S ribosomal protein L36 (second copy) | chromosome | CDS | 526618 | 141 | + | 0.432624 | |
rpsA | 30S ribosomal subunit protein S1 | chromosome | CDS | 1065791 | 1674 | + | 0.510155 | |
rpsB | 30S ribosomal subunit protein S2 | chromosome | CDS | 254297 | 726 | + | 0.509642 | |
rpsC | 30S ribosomal subunit protein S3 | chromosome | CDS | 3592442 | 702 | - | 0.511396 | |
rpsD | 30S ribosomal subunit protein S4 | chromosome | CDS | 3584316 | 621 | - | 0.512077 | |
rpsE | 30S ribosomal subunit protein S5 | chromosome | CDS | 3587987 | 504 | - | 0.505952 | |
rpsF | 30S ribosomal subunit protein S6 | chromosome | CDS | 4630514 | 396 | + | 0.530303 | |
rpsG | 30S ribosomal subunit protein S7 | chromosome | CDS | 3601769 | 471 | - | 0.496815 | |
rpsH | 30S ribosomal subunit protein S8, and regulator | chromosome | CDS | 3589414 | 393 | - | 0.501272 | |
rpsI | 30S ribosomal subunit protein S9 | chromosome | CDS | 3512406 | 393 | - | 0.531807 | |
rpsJ | 30S ribosomal subunit protein S10 | chromosome | CDS | 3596219 | 312 | - | 0.548077 | |
rpsK | 30S ribosomal subunit protein S11 | chromosome | CDS | 3584970 | 390 | - | 0.515385 | |
rpsL | 30S ribosomal subunit protein S12 | chromosome | CDS | 3602335 | 375 | - | 0.528 | |
rpsM | 30S ribosomal subunit protein S13 | chromosome | CDS | 3585376 | 357 | - | 0.52381 | |
rpsN | 30S ribosomal subunit protein S14 | chromosome | CDS | 3589840 | 306 | - | 0.522876 | |
rpsO | 30S ribosomal subunit protein S15 | chromosome | CDS | 3451624 | 270 | - | 0.5 | |
rpsP | 30S ribosomal subunit protein S16 | chromosome | CDS | 2816640 | 249 | - | 0.522088 | |
rpsQ | 30S ribosomal subunit protein S17 | chromosome | CDS | 3591574 | 255 | - | 0.478431 | |
rpsR | 30S ribosomal subunit protein S18 | chromosome | CDS | 4631235 | 228 | + | 0.52193 | |
rpsS | 30S ribosomal subunit protein S19 | chromosome | CDS | 3593508 | 279 | - | 0.491039 | |
rpsT | 30S ribosomal subunit protein S20 | chromosome | CDS | 52280 | 264 | - | 0.465909 | |
rpsU | 30S ribosomal subunit protein S21 | chromosome | CDS | 3374055 | 216 | + | 0.518519 | |
rsmC | 16S ribosomal rRNA | chromosome | CDS | 4811138 | 1029 | - | 0.5724 | |
rsuA | 16S rRNA pseudouridylate 516 synthase | chromosome | CDS | 2323701 | 696 | - | 0.543103 | |
selB | selenocysteinyl-tRNA-specific translation factor | chromosome | CDS | 3870846 | 1851 | - | 0.571043 | |
serS | serine tRNA synthetase | chromosome | CDS | 1043792 | 1293 | + | 0.540603 | |
smpA | small membrane protein A | chromosome | CDS | 2825074 | 339 | + | 0.516224 | |
speG | spermidine N1-acetyltransferase | chromosome | CDS | 1580710 | 561 | - | 0.481283 | |
spoU | putative tRNA/rRNA methyltransferase | chromosome | CDS | 3936186 | 690 | + | 0.544928 | |
srmB | ATP-dependent RNA helicase | chromosome | CDS | 2782903 | 1335 | + | 0.543071 | |
stbD | putative fimbriae; usher | chromosome | CDS | 379705 | 1326 | - | 0.521116 | |
sun | putative rRNA methylase | chromosome | CDS | 3578460 | 1290 | + | 0.536434 | |
tgt | tRNA-guanine transglycosylase | chromosome | CDS | 460821 | 1128 | + | 0.524823 | |
thrS | threonine tRNA synthetase | chromosome | CDS | 1412202 | 1929 | + | 0.504925 | |
trmA | tRNA (uracil-5-)-methyltransferase | chromosome | CDS | 4346636 | 1101 | - | 0.519528 | |
trmD | tRNA (guanine-7-)-methyltransferase | chromosome | CDS | 2815261 | 768 | - | 0.540365 | |
trmU | tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase | chromosome | CDS | 1321589 | 1152 | - | 0.539931 | |
trpS | tryptophan tRNA synthetase | chromosome | CDS | 3636247 | 1005 | - | 0.518408 | |
trpS2 | putative tryptophanyl-tRNA synthetase | chromosome | CDS | 4761826 | 1014 | - | 0.529586 | |
truA | pseudouridylate synthase I | chromosome | CDS | 2480462 | 813 | - | 0.555966 | |
truB | tRNA pseudouridine 5S synthase | chromosome | CDS | 3452044 | 945 | - | 0.555556 | |
tsf | protein chain elongation factor EF-Ts | chromosome | CDS | 255280 | 852 | + | 0.525822 | |
tufA | protein chain elongation factor EF-Tu | chromosome | CDS | 3598302 | 1185 | - | 0.540084 | |
tufB | protein chain elongation factor EF-Tu | chromosome | CDS | 4360603 | 1185 | + | 0.540084 | |
tyrS | tyrosine tRNA synthetase | chromosome | CDS | 1523487 | 1275 | + | 0.528627 | |
valS | valine tRNA synthetase | chromosome | CDS | 4717013 | 2856 | - | 0.570728 | |
yadB | putative glutamyl t-RNA synthetase | chromosome | CDS | 215433 | 942 | - | 0.578556 | |
yaeJ | putative-tRNA hydrolase domain | chromosome | CDS | 281234 | 423 | + | 0.550827 | |
ybfE | LexA regulated, putative SOS response | chromosome | CDS | 757809 | 294 | - | 0.527211 | |
ybjF | putative tRNA (uracil-5-)-methyltransferase | chromosome | CDS | 953113 | 1131 | + | 0.557913 | |
ychF | putative GTP-binding protein | chromosome | CDS | 1881818 | 1092 | + | 0.528388 | |
yciH | putative translation initiation factor SUI1 | chromosome | CDS | 1800261 | 327 | - | 0.464832 | |
yciL | putative ribosomal large subunit pseudouridine synthase | chromosome | CDS | 1815804 | 876 | - | 0.568493 | |
yciO | putative translation factor | chromosome | CDS | 1816780 | 621 | - | 0.52496 | |
yeiP | putative elongation factor | chromosome | CDS | 2310493 | 804 | + | 0.516169 | |
yfbG | putative transformylase | chromosome | CDS | 2406093 | 1983 | + | 0.541604 | |
yfcB | putative methylase | chromosome | CDS | 2495662 | 933 | - | 0.531618 | |
yfhC | putative cytosine/adenosine deaminase | chromosome | CDS | 2713992 | 552 | - | 0.567029 | |
yfiA | ribosome associated factor | chromosome | CDS | 2807668 | 339 | + | 0.471976 | |
yfiF | putative tRNA/rRNA methyltransferase | chromosome | CDS | 2787413 | 1038 | - | 0.569364 | |
ygcA | putative RNA methyltransferase | chromosome | CDS | 3105166 | 1296 | - | 0.543981 | |
ygjO | putative methyltransferase | chromosome | CDS | 3388354 | 1137 | - | 0.537379 | |
yhbH | putative sigma N modulation factor | chromosome | CDS | 3485866 | 288 | + | 0.458333 | |
yhbY | putative RNA-binding protein | chromosome | CDS | 3467442 | 333 | + | 0.471471 | |
yhdG | putative TIM-barrel enzyme | chromosome | CDS | 3555271 | 966 | + | 0.536232 | |
yhjN | putative cellulose synthase | chromosome | CDS | 3798531 | 2301 | - | 0.568883 | |
yibK | putative tRNA/rRNA methyltransferase | chromosome | CDS | 3889591 | 474 | + | 0.563291 | |
yihZ | D-Tyr-tRNA(Tyr) deacylase | chromosome | CDS | 4238211 | 438 | + | 0.563927 | |
yjbC | putative pseudouridine synthase | chromosome | CDS | 4415479 | 870 | + | 0.503448 | |
yjbN | putative TIM-barrel enzyme | chromosome | CDS | 4463960 | 999 | + | 0.555556 | |
yjeA | putative pyruvate oxidase | chromosome | CDS | 4586095 | 978 | + | 0.537832 | |
yjfH | putative tRNA/rRNA methyltransferase | chromosome | CDS | 4613593 | 732 | + | 0.575137 | |
yjgF | putative translation initiation inhibitor | chromosome | CDS | 4703033 | 387 | - | 0.54522 | |
yliG | putative Fe-S oxidoreductases family 1 | chromosome | CDS | 923529 | 1326 | - | 0.541478 | |
ymfC | putative ribosomal large subunit pseudouridine synthase | chromosome | CDS | 1323548 | 666 | - | 0.528529 | |
yoaB | putative translation initiation inhibitor | chromosome | CDS | 1920559 | 345 | + | 0.510145 | |
yohI | putative nitrogen regulation protein | chromosome | CDS | 2270724 | 939 | - | 0.57295 | |
yqcB | putative synthase | chromosome | CDS | 3115544 | 783 | - | 0.583653 | |
yrdC | putative translation factor | chromosome | CDS | 3574089 | 573 | - | 0.535777 | |
yrfH | heat shock protein | chromosome | CDS | 3653063 | 402 | + | 0.562189 |