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2024-04-30 02:25:42

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Salmonella typhimurium LT2, LT2; SGSC 1412; ATCC 700720

Number of genes found: 192

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Salmonella typhimurium LT2, LT2; SGSC 1412; ATCC 700720
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
STM0080 putative outer membrane lipoproteinchromosome CDS93607 231 + 0.484848
STM0926 putative Fels-1 prophage minor tail proteinchromosome CDS999070 2373 + 0.582385
STM1548 putativeS-adenosylmethionine:tRNA-ribosyltransfe rase-isomerasechromosome CDS1624913 1041 + 0.386167
STM1549 putative translation initiation inhibitorchromosome CDS1626005 390 - 0.497436
STM1550 putative cytoplasmic proteinchromosome CDS1626565 285 - 0.421053
STM1873 putative periplasmic or exported proteinchromosome CDS1968296 354 - 0.533898
STM2133 putative cytoplasmic proteinchromosome CDS2225846 885 + 0.500565
STM2534 putative cytoplasmic proteinchromosome CDS2673995 669 + 0.446936
STM2545 putative rRNA methylasechromosome CDS2683585 732 - 0.568306
STM2566 putative periplasmic proteinchromosome CDS2712163 234 + 0.461538
STM3521 putative ribonucleoprotein related-proteinchromosome CDS3683125 1554 - 0.60296
STM3598 putative L-asparaginasechromosome CDS3769992 1044 - 0.51341
STM4450 putative inner membrane proteinchromosome CDS4691680 285 + 0.470175
alaS alanyl-tRNA synthetasechromosome CDS2971371 2631 - 0.549221
ansA cytoplasmic L-asparaginase Ichromosome CDS1371798 1017 - 0.528024
ansB periplasmic L-asparaginase IIchromosome CDS3265481 1047 - 0.526266
argS arginine tRNA synthetasechromosome CDS2002597 1734 + 0.551903
asnS asparagine tRNA synthetasechromosome CDS1091479 1401 - 0.551035
aspS aspartate tRNA synthetasechromosome CDS1995111 1773 - 0.566272
cafA RNase Gchromosome CDS3539847 1470 - 0.527211
cca tRNA nucleotidyl transferasechromosome CDS3369221 1242 + 0.586151
cysS cysteine tRNA synthetasechromosome CDS599135 1386 + 0.549062
dbpA ATP-dependent RNA helicasechromosome CDS1748288 1374 - 0.55313
deaD cysteine sulfinate desulfinasechromosome CDS3446185 1941 - 0.579083
def peptide deformylasechromosome CDS3576936 510 + 0.511765
efp elongation factor Pchromosome CDS4579610 567 + 0.522046
fmt 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferasechromosome CDS3577461 948 + 0.548523
frr ribosome releasing factorchromosome CDS257148 558 + 0.510753
ftsJ 23S rRNA methyltransferasechromosome CDS3466728 627 - 0.515152
fusA protein chain elongation factor EF-Gchromosome CDS3599558 2115 - 0.516785
glnS glutamine tRNA synthetasechromosome CDS747421 1668 + 0.534173
gltX glutamate tRNA synthetase, catalytic subunitchromosome CDS2530163 1416 - 0.552966
glyQ glycine tRNA synthetase, alpha subunitchromosome CDS3841849 912 - 0.558114
glyS glycine tRNA synthetase, beta subunitchromosome CDS3839770 2070 - 0.570048
gshB glutathione synthetasechromosome CDS3256939 948 + 0.545359
hemK putative protoporphyrinogen oxidasechromosome CDS1872498 834 - 0.58753
hisS histidine tRNA synthetasechromosome CDS2654871 1275 - 0.562353
ileS isoleucine tRNA synthetasechromosome CDS53855 2835 + 0.547795
infA protein chain initiation factor IF-1chromosome CDS1030347 219 - 0.488584
infB protein chain initiation factor IF-2chromosome CDS3453610 2679 - 0.554311
infC protein chain initiation factor IF-3chromosome CDS1414242 435 + 0.473563
ksgA S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase; kasugamycin resistancechromosome CDS102663 822 - 0.524331
lasT putative tRNA/tRNA methyltransferasechromosome CDS4856722 687 + 0.525473
leuS leucine tRNA synthetasechromosome CDS709125 2583 - 0.557878
ligT 2'-5' RNA ligasechromosome CDS217751 531 - 0.629002
lysS constitutive lysine tRNA synthetasechromosome CDS3199219 1518 - 0.540843
map methionine aminopeptidasechromosome CDS253052 795 - 0.524528
miaA delta(2)-isopentenylpyrophosphate tRNA-adenosine transferasechromosome CDS4603542 951 + 0.543638
miaB methylthiolation of isopentenylated A37 derivatives in rRNAchromosome CDS734487 1425 - 0.538947
miaE hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNAchromosome CDS4713345 813 + 0.543665
pcnB poly(A) polymerase Ichromosome CDS213874 1419 - 0.561663
pheS phenylalanine tRNA synthetase, alpha-subunitchromosome CDS1415678 984 + 0.538618
pnp polynucleotide phosphorylasechromosome CDS3449247 2136 - 0.562734
prfA peptide chain release factor RF-1chromosome CDS1873331 1083 - 0.575254
prfB peptide chain release factor RF-2chromosome CDS3200746 882 - 0.544218
prfC peptide chain release factor RF-3chromosome CDS4813888 1590 + 0.543396
prfH putative peptide chain release factorchromosome CDS360203 615 + 0.55122
prmA methylation of 50S ribosomal subunit protein L11chromosome CDS3553729 882 + 0.558957
proS proline tRNA synthetasechromosome CDS282467 1719 - 0.547411
pth peptidyl-tRNA hydrolasechromosome CDS1881093 609 + 0.512315
queA S-adenosylmethionine-tRNAribosyltransferase-isomerasechromosome CDS459560 1065 + 0.558685
rbfA ribosome-binding factorchromosome CDS3452988 402 - 0.529851
rfbF glucose-1-phosphate cytidylyltransferasechromosome CDS2173350 774 - 0.435401
rhlB putative helicasechromosome CDS4123427 1266 - 0.547393
rhlE putative ATP-dependent RNA helicasechromosome CDS885586 1365 + 0.58315
rimJ acetylation of N-terminal alanine of 30S ribosomal subunit protein S5chromosome CDS1252507 585 + 0.511111
rimK ribosomal protein S6 modification proteinchromosome CDS946561 903 + 0.563677
rimL acetyl transferasechromosome CDS1701042 540 - 0.503704
rimM 16S rRNA processing proteinchromosome CDS2816073 549 - 0.500911
rluA 23S rRNA pseudouridylate 746 synthasechromosome CDS109331 660 - 0.571212
rluC 23S rRNA pseudouridylate synthasechromosome CDS1272131 960 + 0.553125
rluD pseudouridine synthasechromosome CDS2805547 981 - 0.53211
rmf ribosome modulation factor (involved in dimerization of 70S ribosomes)chromosome CDS1157641 168 + 0.535714
rna RNase I, cleaves phosphodiester bond between any two nucleotideschromosome CDS679989 807 - 0.547708
rnd RNase Dchromosome CDS1914022 1128 - 0.550532
rne RNase Echromosome CDS1268354 3204 - 0.58427
rnpA RNase Pchromosome CDS4045842 360 + 0.561111
rph RNase PHchromosome CDS3926679 717 - 0.549512
rplA 50S ribosomal subunit protein L1chromosome CDS4363537 705 + 0.531915
rplB 50S ribosomal subunit protein L2chromosome CDS3593803 822 - 0.53163
rplC 50S ribosomal subunit protein L3chromosome CDS3595557 630 - 0.51746
rplD 50S ribosomal subunit protein L4chromosome CDS3594941 606 - 0.531353
rplE 50S ribosomal subunit protein L5chromosome CDS3590160 540 - 0.494444
rplF 50S ribosomal subunit protein L6chromosome CDS3588868 534 - 0.516854
rplI 50S ribosomal subunit protein L9chromosome CDS4631504 450 + 0.508889
rplJ 50S ribosomal subunit protein L10chromosome CDS4364661 498 + 0.52008
rplK 50 S ribosomal subunit protein L11chromosome CDS4363105 429 + 0.526807
rplL 50S ribosomal subunit protein L7/L12chromosome CDS4365225 366 + 0.461749
rplM 50S ribosomal subunit protein L13chromosome CDS3512814 429 - 0.512821
rplN 50S ribosomal subunit protein L14chromosome CDS3591039 372 - 0.5
rplO 50S ribosomal subunit protein L15chromosome CDS3587366 435 - 0.544828
rplP 50S ribosomal subunit protein L16chromosome CDS3592019 411 - 0.523114
rplQ 50S ribosomal subunit protein L17chromosome CDS3582877 384 - 0.544271
rplR 50S ribosomal subunit protein L18chromosome CDS3588505 354 - 0.531073
rplS 50S ribosomal subunit protein L19chromosome CDS2814873 348 - 0.485632
rplT 50S ribosomal subunit protein L20chromosome CDS1415020 357 + 0.498599
rplU 50S ribosomal subunit protein L21chromosome CDS3472778 312 - 0.490385
rplV 50S ribosomal subunit protein L22chromosome CDS3593161 333 - 0.501502
rplW 50S ribosomal subunit protein L23chromosome CDS3594642 303 - 0.491749
rplX 50S ribosomal subunit protein L24chromosome CDS3590714 315 - 0.460317
rplY 50S ribosomal subunit protein L25chromosome CDS2326433 285 + 0.512281
rpmA 50S ribosomal subunit protein L27chromosome CDS3472501 258 - 0.496124
rpmB 50S ribosomal subunit protein L28chromosome CDS3922226 237 - 0.518987
rpmC 50S ribosomal subunit protein L29chromosome CDS3591828 192 - 0.53125
rpmD 50S ribosomal subunit protein L30chromosome CDS3587804 180 - 0.505556
rpmE 50S ribosomal subunit protein L31chromosome CDS4305763 213 + 0.488263
rpmE2 putative 50S ribosomal protein L31 (second copy)chromosome CDS526352 261 + 0.440613
rpmF 50S ribosomal subunit protein L32chromosome CDS1275846 174 + 0.528736
rpmG 50S ribosomal subunit protein L33chromosome CDS3922038 168 - 0.39881
rpmH 50S ribosomal subunit protein L34chromosome CDS4045685 141 + 0.524823
rpmI 50S ribosomal subunit protein L35chromosome CDS1414772 198 + 0.489899
rpmJ 50S ribosomal subunit protein Xchromosome CDS3585879 117 - 0.478632
rpmJ2 putative 50S ribosomal protein L36 (second copy)chromosome CDS526618 141 + 0.432624
rpsA 30S ribosomal subunit protein S1chromosome CDS1065791 1674 + 0.510155
rpsB 30S ribosomal subunit protein S2chromosome CDS254297 726 + 0.509642
rpsC 30S ribosomal subunit protein S3chromosome CDS3592442 702 - 0.511396
rpsD 30S ribosomal subunit protein S4chromosome CDS3584316 621 - 0.512077
rpsE 30S ribosomal subunit protein S5chromosome CDS3587987 504 - 0.505952
rpsF 30S ribosomal subunit protein S6chromosome CDS4630514 396 + 0.530303
rpsG 30S ribosomal subunit protein S7chromosome CDS3601769 471 - 0.496815
rpsH 30S ribosomal subunit protein S8, and regulatorchromosome CDS3589414 393 - 0.501272
rpsI 30S ribosomal subunit protein S9chromosome CDS3512406 393 - 0.531807
rpsJ 30S ribosomal subunit protein S10chromosome CDS3596219 312 - 0.548077
rpsK 30S ribosomal subunit protein S11chromosome CDS3584970 390 - 0.515385
rpsL 30S ribosomal subunit protein S12chromosome CDS3602335 375 - 0.528
rpsM 30S ribosomal subunit protein S13chromosome CDS3585376 357 - 0.52381
rpsN 30S ribosomal subunit protein S14chromosome CDS3589840 306 - 0.522876
rpsO 30S ribosomal subunit protein S15chromosome CDS3451624 270 - 0.5
rpsP 30S ribosomal subunit protein S16chromosome CDS2816640 249 - 0.522088
rpsQ 30S ribosomal subunit protein S17chromosome CDS3591574 255 - 0.478431
rpsR 30S ribosomal subunit protein S18chromosome CDS4631235 228 + 0.52193
rpsS 30S ribosomal subunit protein S19chromosome CDS3593508 279 - 0.491039
rpsT 30S ribosomal subunit protein S20chromosome CDS52280 264 - 0.465909
rpsU 30S ribosomal subunit protein S21chromosome CDS3374055 216 + 0.518519
rsmC 16S ribosomal rRNAchromosome CDS4811138 1029 - 0.5724
rsuA 16S rRNA pseudouridylate 516 synthasechromosome CDS2323701 696 - 0.543103
selB selenocysteinyl-tRNA-specific translation factorchromosome CDS3870846 1851 - 0.571043
serS serine tRNA synthetasechromosome CDS1043792 1293 + 0.540603
smpA small membrane protein Achromosome CDS2825074 339 + 0.516224
speG spermidine N1-acetyltransferasechromosome CDS1580710 561 - 0.481283
spoU putative tRNA/rRNA methyltransferasechromosome CDS3936186 690 + 0.544928
srmB ATP-dependent RNA helicasechromosome CDS2782903 1335 + 0.543071
stbD putative fimbriae; usherchromosome CDS379705 1326 - 0.521116
sun putative rRNA methylasechromosome CDS3578460 1290 + 0.536434
tgt tRNA-guanine transglycosylasechromosome CDS460821 1128 + 0.524823
thrS threonine tRNA synthetasechromosome CDS1412202 1929 + 0.504925
trmA tRNA (uracil-5-)-methyltransferasechromosome CDS4346636 1101 - 0.519528
trmD tRNA (guanine-7-)-methyltransferasechromosome CDS2815261 768 - 0.540365
trmU tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS1321589 1152 - 0.539931
trpS tryptophan tRNA synthetasechromosome CDS3636247 1005 - 0.518408
trpS2 putative tryptophanyl-tRNA synthetasechromosome CDS4761826 1014 - 0.529586
truA pseudouridylate synthase Ichromosome CDS2480462 813 - 0.555966
truB tRNA pseudouridine 5S synthasechromosome CDS3452044 945 - 0.555556
tsf protein chain elongation factor EF-Tschromosome CDS255280 852 + 0.525822
tufA protein chain elongation factor EF-Tuchromosome CDS3598302 1185 - 0.540084
tufB protein chain elongation factor EF-Tuchromosome CDS4360603 1185 + 0.540084
tyrS tyrosine tRNA synthetasechromosome CDS1523487 1275 + 0.528627
valS valine tRNA synthetasechromosome CDS4717013 2856 - 0.570728
yadB putative glutamyl t-RNA synthetasechromosome CDS215433 942 - 0.578556
yaeJ putative-tRNA hydrolase domainchromosome CDS281234 423 + 0.550827
ybfE LexA regulated, putative SOS responsechromosome CDS757809 294 - 0.527211
ybjF putative tRNA (uracil-5-)-methyltransferasechromosome CDS953113 1131 + 0.557913
ychF putative GTP-binding proteinchromosome CDS1881818 1092 + 0.528388
yciH putative translation initiation factor SUI1chromosome CDS1800261 327 - 0.464832
yciL putative ribosomal large subunit pseudouridine synthasechromosome CDS1815804 876 - 0.568493
yciO putative translation factorchromosome CDS1816780 621 - 0.52496
yeiP putative elongation factorchromosome CDS2310493 804 + 0.516169
yfbG putative transformylasechromosome CDS2406093 1983 + 0.541604
yfcB putative methylasechromosome CDS2495662 933 - 0.531618
yfhC putative cytosine/adenosine deaminasechromosome CDS2713992 552 - 0.567029
yfiA ribosome associated factorchromosome CDS2807668 339 + 0.471976
yfiF putative tRNA/rRNA methyltransferasechromosome CDS2787413 1038 - 0.569364
ygcA putative RNA methyltransferasechromosome CDS3105166 1296 - 0.543981
ygjO putative methyltransferasechromosome CDS3388354 1137 - 0.537379
yhbH putative sigma N modulation factorchromosome CDS3485866 288 + 0.458333
yhbY putative RNA-binding proteinchromosome CDS3467442 333 + 0.471471
yhdG putative TIM-barrel enzymechromosome CDS3555271 966 + 0.536232
yhjN putative cellulose synthasechromosome CDS3798531 2301 - 0.568883
yibK putative tRNA/rRNA methyltransferasechromosome CDS3889591 474 + 0.563291
yihZ D-Tyr-tRNA(Tyr) deacylasechromosome CDS4238211 438 + 0.563927
yjbC putative pseudouridine synthasechromosome CDS4415479 870 + 0.503448
yjbN putative TIM-barrel enzymechromosome CDS4463960 999 + 0.555556
yjeA putative pyruvate oxidasechromosome CDS4586095 978 + 0.537832
yjfH putative tRNA/rRNA methyltransferasechromosome CDS4613593 732 + 0.575137
yjgF putative translation initiation inhibitorchromosome CDS4703033 387 - 0.54522
yliG putative Fe-S oxidoreductases family 1chromosome CDS923529 1326 - 0.541478
ymfC putative ribosomal large subunit pseudouridine synthasechromosome CDS1323548 666 - 0.528529
yoaB putative translation initiation inhibitorchromosome CDS1920559 345 + 0.510145
yohI putative nitrogen regulation proteinchromosome CDS2270724 939 - 0.57295
yqcB putative synthasechromosome CDS3115544 783 - 0.583653
yrdC putative translation factorchromosome CDS3574089 573 - 0.535777
yrfH heat shock proteinchromosome CDS3653063 402 + 0.562189