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2024-05-19 01:59:33

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Shigella flexneri 2a str. 301, 301

Number of genes found: 180

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Shigella flexneri 2a str. 301, 301
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SF1013 orf, conserved hypothetical proteinchromosome CDS1059833 387 - 0.537468
NA SF2579 putative ATP synthase beta subunitchromosome CDS2647436 741 - 0.547908
NA SF1419 orf, conserved hypothetical proteinchromosome CDS1456576 393 - 0.506361
alaS SF2720 alanyl-tRNA synthetasechromosome CDS2792881 2631 - 0.537438
ansA SF1456 cytoplasmic L-asparaginase Ichromosome CDS1490877 1017 - 0.508358
ansB SF2954 periplasmic L-asparaginase IIchromosome CDS3041781 1047 - 0.52531
argS SF1917 arginine tRNA synthetasechromosome CDS1953557 1734 + 0.529988
asnS SF0927 asparagine tRNA synthetasechromosome CDS972807 1401 - 0.528194
aspS SF1876 aspartate tRNA synthetasechromosome CDS1912622 1773 - 0.537507
cafA SF3285 ribonuclease Gchromosome CDS3383898 1470 - 0.521088
cca SF3097 tRNA nucleotidyl transferasechromosome CDS3191016 1239 + 0.561743
cysS SF0457 cysteine tRNA synthetasechromosome CDS473134 1386 + 0.547619
dbpA SF1826 ATP-dependent RNA helicasechromosome CDS1864246 1368 - 0.516082
deaD SF3203 inducible ATP-independent RNA helicasechromosome CDS3298178 1941 - 0.555384
def SF3318 peptide deformylasechromosome CDS3416515 510 + 0.462745
efp SF4303 elongation factor P (EF-P)chromosome CDS4480086 567 + 0.497355
fmt SF3319 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferasechromosome CDS3417039 948 + 0.525316
frr SF0162 ribosome releasing factorchromosome CDS183816 558 + 0.508961
ftsJ SF3219 cell division proteinchromosome CDS3319218 630 - 0.501587
fusA SF3358 GTP-binding protein chain elongation factor EF-Gchromosome CDS3440918 1875 - 0.5104
glnS SF0613 glutamine tRNA synthetasechromosome CDS644078 1665 - 0.524324
gltX SF2462 glutamate tRNA synthetase, catalytic subunitchromosome CDS2520675 1416 - 0.525424
glyQ SF3603 glycine tRNA synthetase, alpha subunitchromosome CDS3706070 912 - 0.558114
glyS SF3602 glycine tRNA synthetase, beta subunitchromosome CDS3703991 2070 - 0.557005
gshB SF2938 glutathione synthetasechromosome CDS3030181 951 + 0.535226
hemK SF1215 possible protoporphyrinogen oxidasechromosome CDS1262975 834 + 0.551559
hisS SF2560 histidine tRNA synthetasechromosome CDS2628753 1275 - 0.543529
ileS SF0022 isoleucine tRNA synthetasechromosome CDS21346 2817 + 0.556975
infA SF0843 protein chain initiation factor IF-1chromosome CDS877597 219 - 0.484018
infB SF3209 protein chain initiation factor IF-2chromosome CDS3305549 2649 - 0.534541
infC SF1513 protein chain initiation factor IF-3chromosome CDS1546478 435 + 0.473563
iucB SF3716 siderophore biosynthesis proteinchromosome CDS3822575 948 + 0.564346
ksgA SF0048 S-adenosylmethionine-6-N,N-adenosyl (rRNA) dimethyltransferasechromosome CDS50927 822 - 0.534063
lasT SF4434 orf, conserved hypothetical proteinchromosome CDS4606493 687 + 0.502183
leuS SF0639 leucine tRNA synthetasechromosome CDS675737 2583 + 0.533875
lysS SF2876 lysine tRNA synthetasechromosome CDS2967572 1518 - 0.528986
map SF0158 methionine aminopeptidasechromosome CDS179656 795 - 0.50566
miaA SF4326 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferasechromosome CDS4504071 951 + 0.534175
ospD1 CP0022 OspD1, secreted by the Mxi-Spa secretion machinery, function unknownpCP301 CDS18898 678 + 0.355457
pcnB SF0135 poly(A) polymerase Ichromosome CDS149507 1365 - 0.557509
pheS SF1517 phenylalanine tRNA synthetase, alpha-subunitchromosome CDS1548065 984 + 0.539634
pnp SF3205 polynucleotide phosphorylasechromosome CDS3301240 2205 - 0.535147
prfA SF1214 peptide chain release factor RF-1chromosome CDS1261893 1083 + 0.530009
prfB SF2877 chromosome pseudo2969099 1099 - 0.532302
prfB SF2877 chromosome pseudo2969099 1099 - 0.532302
prfC SF4406 peptide chain release factor RF-3chromosome CDS4576286 1590 + 0.535849
prfH SF0284 probable peptide chain release factorchromosome CDS301971 456 + 0.563596
prmA SF3297 methylase for 50S ribosomal subunit protein L11chromosome CDS3396642 882 + 0.544218
proS SF0185 proline tRNA synthetasechromosome CDS207955 1719 - 0.544503
pth SF1207 peptidyl-tRNA hydrolasechromosome CDS1254810 585 - 0.500855
queA SF0342 probable S-adenosylmethionine:tRNA ribosyltransferase-isomerasechromosome CDS354510 1071 + 0.539683
rbfA SF3208 ribosome-binding factor Achromosome CDS3304984 402 - 0.529851
relE SF1548 orf, conserved hypothetical proteinchromosome CDS1581699 288 - 0.46875
rhlB SF3853 putative ATP-dependent RNA helicasechromosome CDS3972930 1266 - 0.524487
rhlE SF0747 putative ATP-dependent RNA helicasechromosome CDS773699 1221 + 0.553645
rimJ SF1072 ribosomal-protein-alanine acetyltransferasechromosome CDS1113323 585 + 0.495726
rimK SF0806 ribosomal protein S6 modification proteinchromosome CDS838722 903 + 0.554817
rimL SF1783 ribosomal-protein-serine acetyltransferasechromosome CDS1820471 537 - 0.439479
rna SF0529 RNase Ichromosome CDS550043 825 - 0.509091
rnd SF1424 RNase Dchromosome CDS1462309 1116 + 0.543011
rne SF1088 RNase Echromosome CDS1128893 3183 - 0.558278
rnpA SF3760 RNase P, protein component; protein C5chromosome CDS3867907 360 - 0.561111
rph SF3682 RNase PHchromosome CDS3786148 717 - 0.563459
rplA SF4057 50S ribosomal subunit protein L1chromosome CDS4198657 681 + 0.51395
rplB SF3349 50S ribosomal subunit protein L2chromosome CDS3434927 822 - 0.526764
rplC SF3352 50S ribosomal subunit protein L3chromosome CDS3436681 630 - 0.514286
rplD SF3351 50S ribosomal subunit protein L4chromosome CDS3436065 606 - 0.529703
rplE SF3340 50S ribosomal subunit protein L5chromosome CDS3431283 540 - 0.496296
rplF SF3337 50S ribosomal subunit protein L6chromosome CDS3429991 534 - 0.524345
rplI SF4356 50S ribosomal subunit protein L9chromosome CDS4530386 450 + 0.497778
rplJ SF4058 50S ribosomal subunit protein L10chromosome CDS4199750 498 + 0.524096
rplK SF4056 50S ribosomal subunit protein L11chromosome CDS4198200 429 + 0.519814
rplL SF4059 50S ribosomal subunit protein L7/L12chromosome CDS4200314 366 + 0.461749
rplM SF3271 50S ribosomal subunit protein L13chromosome CDS3366096 429 - 0.503497
rplN SF3342 50S ribosomal subunit protein L14chromosome CDS3432162 372 - 0.510753
rplO SF3333 50S ribosomal subunit protein L15chromosome CDS3428489 435 - 0.535632
rplP SF3345 50S ribosomal subunit protein L16chromosome CDS3433143 411 - 0.520681
rplQ SF3326 50S ribosomal subunit protein L17chromosome CDS3424000 384 - 0.536458
rplR SF3336 50S ribosomal subunit protein L18chromosome CDS3429628 354 - 0.536723
rplS SF2666 50S ribosomal subunit protein L19chromosome CDS2742835 348 - 0.482759
rplT SF1515 50S ribosomal subunit protein L20/regulatorchromosome CDS1547259 357 + 0.481793
rplU SF3226 50S ribosomal subunit protein L21chromosome CDS3325323 312 - 0.483974
rplV SF3347 50S ribosomal subunit protein L22chromosome CDS3434285 333 - 0.495495
rplW SF3350 50S ribosomal subunit protein L23chromosome CDS3435766 303 - 0.481848
rplX SF3341 50S ribosomal subunit protein L24chromosome CDS3431837 315 - 0.460317
rplY SF2272 50S ribosomal subunit protein L25chromosome CDS2305721 285 + 0.498246
rpmA SF3225 50S ribosomal subunit protein L27chromosome CDS3325045 258 - 0.496124
rpmB SF3676 50S ribosomal subunit protein L28chromosome CDS3781752 237 - 0.531646
rpmC SF3344 50S ribosomal subunit protein L29chromosome CDS3432952 192 - 0.536458
rpmD SF3334 50S ribosomal subunit protein L30chromosome CDS3428927 180 - 0.494444
rpmE SF4014 50S ribosomal subunit protein L31chromosome CDS4142091 213 + 0.488263
rpmF SF1093 50S ribosomal subunit protein L32chromosome CDS1135084 174 + 0.54023
rpmG SF3675 50S ribosomal subunit protein L33chromosome CDS3781564 168 - 0.39881
rpmH SF3761 50S ribosomal subunit protein L34chromosome CDS3868283 141 - 0.51773
rpmI SF1514 50S ribosomal subunit protein Achromosome CDS1547009 198 + 0.494949
rpmJ SF3331 50S ribosomal subunit protein L36chromosome CDS3427002 117 - 0.478632
rpsA SF0907 30S ribosomal subunit protein S1chromosome CDS945786 1674 + 0.510753
rpsB SF0159 30S ribosomal subunit protein S2chromosome CDS180818 726 + 0.511019
rpsC SF3346 30S ribosomal subunit protein S3chromosome CDS3433566 702 - 0.507123
rpsD SF3328 30S ribosomal subunit protein S4chromosome CDS3425439 609 - 0.512315
rpsE SF3335 30S ribosomal subunit protein S5chromosome CDS3429110 504 - 0.498016
rpsF SF4354 30S ribosomal subunit protein S6chromosome CDS4529396 396 + 0.527778
rpsG SF3359 30S ribosomal subunit protein S7chromosome CDS3442889 471 - 0.496815
rpsH SF3338 30S ribosomal subunit protein S8, and regulatorchromosome CDS3430537 393 - 0.501272
rpsI SF3270 30S ribosomal subunit protein S9chromosome CDS3365688 393 - 0.521628
rpsJ SF3353 30S ribosomal subunit protein S10chromosome CDS3437343 312 - 0.554487
rpsK SF3329 30S ribosomal subunit protein S11chromosome CDS3426093 390 - 0.515385
rpsL SF3360 30S ribosomal subunit protein S12chromosome CDS3443456 375 - 0.533333
rpsM SF3330 30S ribosomal subunit protein S13chromosome CDS3426499 357 - 0.518207
rpsN SF3339 30S ribosomal subunit protein S14chromosome CDS3430963 306 - 0.526144
rpsO SF3206 30S ribosomal subunit protein S15chromosome CDS3303622 270 - 0.514815
rpsP SF2669 30S ribosomal subunit protein S16chromosome CDS2744589 249 - 0.514056
rpsQ SF3343 30S ribosomal subunit protein S17chromosome CDS3432698 255 - 0.47451
rpsR SF4355 30S ribosomal subunit protein S18chromosome CDS4530117 228 + 0.526316
rpsS SF3348 30S ribosomal subunit protein S19chromosome CDS3434632 279 - 0.491039
rpsT SF0020 30S ribosomal subunit protein S20chromosome CDS19770 186 - 0.473118
rpsU SF3106 30S ribosomal subunit protein S21chromosome CDS3199819 216 + 0.518519
rsuA SF2270 16S pseudouridylate 516 synthasechromosome CDS2302991 696 - 0.533046
selB SF3628 selenocysteinyl-tRNA-specific translation factorchromosome CDS3732314 1845 - 0.56206
serS SF0852 serine tRNA synthetasechromosome CDS890834 1293 + 0.527456
sfhB SF2653 ftsH mutation suppressorchromosome CDS2729698 981 + 0.529052
smpA SF2676 small membrane protein Achromosome CDS2752334 153 + 0.470588
spoU SF3691 putative RNA methylasechromosome CDS3794831 690 + 0.552174
srmB SF2638 ATP-dependent RNA helicasechromosome CDS2710111 1335 + 0.549064
sun SF3320 orf, conserved hypothetical proteinchromosome CDS3418032 1290 + 0.5
tgt SF0343 tRNA-guanine transglycosylasechromosome CDS355635 1128 + 0.507092
thrS SF1512 threonine tRNA synthetasechromosome CDS1544438 1929 + 0.498186
trmA SF4047 tRNA (uracil-5-)-methyltransferasechromosome CDS4182182 1101 - 0.510445
trmD SF2667 tRNA methyltransferase; tRNA (guanine-7-)-methyltransferasechromosome CDS2743224 768 - 0.532552
trpS SF3402 tryptophan tRNA synthetasechromosome CDS3481842 1005 - 0.520398
truA SF2394 pseudouridylate synthase Ichromosome CDS2442936 813 - 0.555966
truB SF3207 tRNA pseudouridine 5S synthasechromosome CDS3304040 945 - 0.520635
tsf SF0160 protein chain elongation factor EF-Tschromosome CDS181801 852 + 0.496479
tufA SF4053 protein chain elongation factor EF-Tu (duplicate of tufB)chromosome CDS4195697 1185 + 0.533333
tufA SF3357 protein chain elongation factor EF-Tu (duplicate of tufB)chromosome CDS3439423 1185 - 0.534177
tyrS SF1662 tyrosine tRNA synthetasechromosome CDS1692714 1275 - 0.518431
valS SF4231 valine tRNA synthetasechromosome CDS4403734 2856 + 0.547619
yabO SF0053 orf, conserved hypothetical proteinchromosome CDS57645 687 - 0.548763
yadB SF0136 putative tRNA synthetasechromosome CDS150964 927 - 0.535059
yadP SF0139 orf, conserved hypothetical proteinchromosome CDS153279 540 - 0.559259
yaeJ SF0182 orf, conserved hypothetical proteinchromosome CDS205777 423 + 0.541371
ybfG SF2334 putative transformylasechromosome CDS2381200 1551 + 0.513217
ybjF SF0813 putative enzymechromosome CDS845274 1128 + 0.546986
yceC SF1090 orf, conserved hypothetical proteinchromosome CDS1132657 960 + 0.515625
ycfB SF1152 orf, conserved hypothetical proteinchromosome CDS1193851 1152 - 0.537326
ychF SF1206 putative GTP-binding proteinchromosome CDS1253602 1092 - 0.510073
yciH SF1286 orf, conserved hypothetical proteinchromosome CDS1336938 330 + 0.5
yciO SF1270 orf, conserved hypothetical proteinchromosome CDS1320411 657 + 0.494673
yeiP SF2258 putative elongation factorchromosome CDS2288398 828 + 0.507246
yfcB SF2407 putative adenine-specific methylasechromosome CDS2455631 1266 - 0.511848
yfhC SF2606 putative deaminasechromosome CDS2682226 537 - 0.540037
yfiA SF2657 putative yhbH sigma 54 modulatorchromosome CDS2735806 342 + 0.461988
yfiF SF2643 orf, conserved hypothetical proteinchromosome CDS2714532 1038 - 0.563584
yfjA SF2668 orf, conserved hypothetical proteinchromosome CDS2744022 549 - 0.48816
ygcA SF2798 putative enzymechromosome CDS2872685 1302 - 0.514593
ygjO SF3124 putative enzymechromosome CDS3224977 1137 - 0.53562
yhaR SF3153 orf, conserved hypothetical proteinchromosome CDS3251227 390 - 0.525641
yhbH SF3243 probable sigma-54 modulation proteinchromosome CDS3338342 288 + 0.444444
yhbY SF3220 orf, conserved hypothetical proteinchromosome CDS3319973 294 + 0.486395
yhdG SF3298 putative dehydrogenasechromosome CDS3397975 843 + 0.520759
yibK SF3645 orf, conserved hypothetical proteinchromosome CDS3753811 474 + 0.550633
yicN SF3798 orf, conserved hypothetical proteinchromosome CDS3909001 480 + 0.51875
yihZ SF3959 orf, conserved hypothetical proteinchromosome CDS4089660 438 + 0.552511
yjbC SF4095 orf, conserved hypothetical proteinchromosome CDS4254103 873 + 0.520046
yjbN SF4156 orf, conserved hypothetical proteinchromosome CDS4327076 1020 - 0.532353
yjeA SF4313 putative lysyl-tRNA synthetasechromosome CDS4487030 978 + 0.522495
yjeJ SF4299 orf, conserved hypothetical proteinchromosome CDS4476985 870 - 0.454023
yjfH SF4335 orf, conserved hypothetical proteinchromosome CDS4514094 732 + 0.560109
yjgF SF4247 orf, conserved hypothetical proteinchromosome CDS4416166 426 + 0.507042
yjgH SF4242 orf, conserved hypothetical proteinchromosome CDS4413909 396 + 0.474747
yjiI SF4187 orf, conserved hypothetical proteinchromosome CDS4362144 687 - 0.487627
yjjT SF4402 putative enzymechromosome CDS4573541 1032 - 0.546512
yleA SF0621 orf, conserved hypothetical proteinchromosome CDS656764 1425 + 0.540351
yliG SF0785 orf, conserved hypothetical proteinchromosome CDS820867 1326 - 0.527903
ymfC SF1154 orf, conserved hypothetical proteinchromosome CDS1195482 624 - 0.516026
ymjA SF1300 orf, conserved hypothetical proteinchromosome CDS1351695 246 - 0.48374
yohI SF2225 putative regulator proteinchromosome CDS2252261 948 - 0.543249
yqcB SF2804 orf, conserved hypothetical proteinchromosome CDS2882002 783 - 0.535121
yrdC SF3314 orf, conserved hypothetical proteinchromosome CDS3413633 573 - 0.52356
yrfH SF3418 orf, conserved hypothetical proteinchromosome CDS3498563 402 + 0.532338