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2024-05-02 13:50:37

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Escherichia coli K12, K-12

Number of genes found: 185

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Escherichia coli K12, K-12
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA b0362 orf, hypothetical proteinchromosome CDS381728 387 - 0.45478
alaS b2697 alanyl-tRNA synthetasechromosome CDS2817403 2631 - 0.536298
ansA b1767 cytoplasmic L-asparaginase Ichromosome CDS1848884 1017 + 0.511308
ansB b2957 periplasmic L-asparaginase IIchromosome CDS3097704 1047 - 0.526266
argS b1876 arginine tRNA synthetasechromosome CDS1958086 1734 + 0.532872
asnS b0930 asparagine tRNA synthetasechromosome CDS986808 1401 - 0.523911
aspS b1866 aspartate tRNA synthetasechromosome CDS1946774 1773 - 0.537507
cca b3056 tRNA nucleotidyl transferasechromosome CDS3199913 1239 + 0.56255
cysS b0526 cysteine tRNA synthetasechromosome CDS553834 1386 + 0.544733
dbpA b1343 ATP-dependent RNA helicasechromosome CDS1407535 1374 + 0.519651
deaD b3162 inducible ATP-independent RNA helicasechromosome CDS3303993 1941 - 0.552293
def b3287 peptide deformylasechromosome CDS3431712 510 + 0.462745
dtd b3887 D-Tyr-tRNATyr deacyclasechromosome CDS4075038 438 + 0.550228
efp b4147 elongation factor P (EF-P)chromosome CDS4373722 567 + 0.493827
flxA b1566 orf, hypothetical proteinchromosome CDS1644429 333 + 0.429429
fmt b3288 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferasechromosome CDS3432236 948 + 0.528481
frr b0172 ribosome releasing factorchromosome CDS192872 558 + 0.508961
fusA b3340 GTP-binding protein chain elongation factor EF-Gchromosome CDS3469422 2115 - 0.508274
glnS b0680 glutamine tRNA synthetasechromosome CDS705316 1665 + 0.524925
gltX b2400 glutamate tRNA synthetase, catalytic subunitchromosome CDS2517279 1416 - 0.525424
glyQ b3560 glycine tRNA synthetase, alpha subunitchromosome CDS3722430 912 - 0.561404
glyS b3559 glycine tRNA synthetase, beta subunitchromosome CDS3720351 2070 - 0.554106
gshB b2947 glutathione synthetasechromosome CDS3089900 951 + 0.534175
hemK b1212 possible protoporphyrinogen oxidasechromosome CDS1265317 834 + 0.551559
hisS b2514 histidine tRNA synthetasechromosome CDS2637323 1275 - 0.547451
hslR b3400 Hsp15; DNA/RNA binding heat shock proteinchromosome CDS3527370 402 + 0.534826
ileS b0026 isoleucine tRNA synthetasechromosome CDS22391 2817 + 0.557685
infA b0884 protein chain initiation factor IF-1chromosome CDS925448 219 - 0.484018
infB b3168 protein chain initiation factor IF-2chromosome CDS3311364 2673 - 0.534231
infC b1718 protein chain initiation factor IF-3chromosome CDS1798120 543 - 0.486188
kptA b4331 2'-phosphotransferasechromosome CDS4558851 657 + 0.491629
ksgA b0051 S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferasechromosome CDS51609 822 - 0.530414
lasT b4403 orf, hypothetical proteinchromosome CDS4638965 687 + 0.497817
leuS b0642 leucine tRNA synthetasechromosome CDS671424 2583 - 0.533488
ligT b0147 2'-5' RNA ligasechromosome CDS161501 540 - 0.561111
lysS b2890 lysine tRNA synthetase, constitutive; suppressor of ColE1 mutation in primer RNAchromosome CDS3031679 1518 - 0.530962
lysU b4129 lysine tRNA synthetase, inducible; heat shock proteinchromosome CDS4351223 1518 - 0.474308
map b0168 methionine aminopeptidasechromosome CDS188712 795 - 0.504403
miaA b4171 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferasechromosome CDS4397275 951 + 0.534175
pcnB b0143 poly(A) polymerase Ichromosome CDS157729 1365 - 0.561905
pheS b1714 phenylalanine tRNA synthetase, alpha-subunitchromosome CDS1795983 984 - 0.538618
pnp b3164 polynucleotide phosphorylase; cytidylate kinase activitychromosome CDS3307055 2205 - 0.536961
prfA b1211 peptide chain release factor RF-1chromosome CDS1264235 1083 + 0.530009
prfB b2891 peptide chain release factor RF-2chromosome CDS3033206 1099 - 0.535032
prfC b4375 peptide chain release factor RF-3chromosome CDS4607437 1590 + 0.540252
prfH b0236 probable peptide chain release factorchromosome CDS253702 501 + 0.542914
prmA b3259 methylase for 50S ribosomal subunit protein L11chromosome CDS3407092 882 + 0.543084
proS b0194 proline tRNA synthetasechromosome CDS217057 1719 - 0.545084
pth b1204 peptidyl-tRNA hydrolasechromosome CDS1257152 585 - 0.497436
queA b0405 synthesis of queuine in tRNA; probably S-adenosylmethionine:tRNA ribosyltransferase-isomerasechromosome CDS424235 1071 + 0.54155
rbfA b3167 ribosome-binding factor Achromosome CDS3310799 402 - 0.529851
relE b1563 orf, hypothetical proteinchromosome CDS1643370 288 - 0.46875
rhlB b3780 putative ATP-dependent RNA helicasechromosome CDS3962388 1266 - 0.525276
rhlE b0797 putative ATP-dependent RNA helicasechromosome CDS830095 1365 + 0.567033
rimJ b1066 acetylation of N-terminal alanine of 30S ribosomal subunit protein S5chromosome CDS1124785 585 + 0.494017
rimK b0852 ribosomal protein S6 modification proteinchromosome CDS891190 903 + 0.562569
rimL b1427 ribosomal-protein-serine acetyltransferasechromosome CDS1496962 540 + 0.433333
rimM b2608 16S rRNA processing proteinchromosome CDS2743392 558 - 0.491039
rluA b0058 Ribosomal large subunit pseudouridine synthase Achromosome CDS59687 660 - 0.539394
rluC b1086 Ribosomal large subunit pseudouridine synthase Cchromosome CDS1144163 960 + 0.514583
rluD b2594 23S rRNA pseudouridine synthasechromosome CDS2733053 981 - 0.528033
rmf b0953 ribosome modulation factorchromosome CDS1014938 168 + 0.541667
rna b0611 RNase I, cleaves phosphodiester bond between any two nucleotideschromosome CDS643420 807 - 0.511772
rnd b1804 RNase D, processes tRNA precursorchromosome CDS1884888 1128 - 0.54078
rne b1084 RNase E, membrane attachment, mRNA turnover, maturation 5S RNAchromosome CDS1140405 3186 - 0.556497
rng b3247 RNase Gchromosome CDS3394348 1488 - 0.519489
rnpA b3704 RNase P, protein component; protein C5chromosome CDS3882516 360 + 0.558333
rph b3643 RNase PHchromosome CDS3813886 687 - 0.561863
rplA b3984 50S ribosomal subunit protein L1, regulates synthesis of L1 and L11chromosome CDS4176902 705 + 0.516312
rplB b3317 50S ribosomal subunit protein L2chromosome CDS3448565 822 - 0.526764
rplC b3320 50S ribosomal subunit protein L3chromosome CDS3450319 630 - 0.514286
rplD b3319 50S ribosomal subunit protein L4, regulates expression of S10 operonchromosome CDS3449703 606 - 0.529703
rplE b3308 50S ribosomal subunit protein L5chromosome CDS3444921 540 - 0.498148
rplF b3305 50S ribosomal subunit protein L6chromosome CDS3443629 534 - 0.520599
rplI b4203 50S ribosomal subunit protein L9chromosome CDS4424131 450 + 0.497778
rplJ b3985 50S ribosomal subunit protein L10chromosome CDS4178019 498 + 0.524096
rplK b3983 50S ribosomal subunit protein L11chromosome CDS4176470 429 + 0.522144
rplL b3986 50S ribosomal subunit protein L7/L12chromosome CDS4178583 366 + 0.461749
rplM b3231 50S ribosomal subunit protein L13chromosome CDS3376245 429 - 0.505827
rplN b3310 50S ribosomal subunit protein L14chromosome CDS3445800 372 - 0.510753
rplO b3301 50S ribosomal subunit protein L15chromosome CDS3442127 435 - 0.535632
rplP b3313 50S ribosomal subunit protein L16chromosome CDS3446781 411 - 0.518248
rplQ b3294 50S ribosomal subunit protein L17chromosome CDS3437638 384 - 0.536458
rplR b3304 50S ribosomal subunit protein L18chromosome CDS3443266 354 - 0.536723
rplS b2606 50S ribosomal subunit protein L19chromosome CDS2742205 348 - 0.482759
rplT b1716 50S ribosomal subunit protein L20, and regulatorchromosome CDS1797417 357 - 0.481793
rplU b3186 50S ribosomal subunit protein L21chromosome CDS3331162 312 - 0.483974
rplV b3315 50S ribosomal subunit protein L22chromosome CDS3447923 333 - 0.498498
rplW b3318 50S ribosomal subunit protein L23chromosome CDS3449404 303 - 0.481848
rplX b3309 50S ribosomal subunit protein L24chromosome CDS3445475 315 - 0.460317
rplY b2185 50S ribosomal subunit protein L25chromosome CDS2280539 285 + 0.505263
rpmA b3185 50S ribosomal subunit protein L27chromosome CDS3330884 258 - 0.5
rpmB b3637 50S ribosomal subunit protein L28chromosome CDS3809461 237 - 0.531646
rpmC b3312 50S ribosomal subunit protein L29chromosome CDS3446590 192 - 0.541667
rpmD b3302 50S ribosomal subunit protein L30chromosome CDS3442565 180 - 0.5
rpmE b3936 50S ribosomal subunit protein L31chromosome CDS4125036 213 + 0.492958
rpmF b1089 50S ribosomal subunit protein L32chromosome CDS1146590 174 + 0.54023
rpmG b3636 50S ribosomal subunit protein L33chromosome CDS3809273 168 - 0.404762
rpmH b3703 50S ribosomal subunit protein L34chromosome CDS3882359 141 + 0.51773
rpmI b1717 50S ribosomal subunit protein Achromosome CDS1797826 198 - 0.5
rpmJ b3299 50S ribosomal subunit protein L36chromosome CDS3440640 117 - 0.478632
rpsA b0911 30S ribosomal subunit protein S1chromosome CDS961218 1674 + 0.511947
rpsB b0169 30S ribosomal subunit protein S2chromosome CDS189874 726 + 0.513774
rpsC b3314 30S ribosomal subunit protein S3chromosome CDS3447204 702 - 0.509971
rpsD b3296 30S ribosomal subunit protein S4chromosome CDS3439077 621 - 0.507246
rpsE b3303 30S ribosomal subunit protein S5chromosome CDS3442748 504 - 0.501984
rpsF b4200 30S ribosomal subunit protein S6chromosome CDS4423141 396 + 0.525253
rpsG b3341 30S ribosomal subunit protein S7, initiates assemblychromosome CDS3471564 540 - 0.501852
rpsH b3306 30S ribosomal subunit protein S8, and regulatorchromosome CDS3444175 393 - 0.501272
rpsI b3230 30S ribosomal subunit protein S9chromosome CDS3375837 393 - 0.524173
rpsJ b3321 30S ribosomal subunit protein S10chromosome CDS3450981 312 - 0.554487
rpsK b3297 30S ribosomal subunit protein S11chromosome CDS3439731 390 - 0.515385
rpsL b3342 30S ribosomal subunit protein S12chromosome CDS3472200 375 - 0.533333
rpsM b3298 30S ribosomal subunit protein S13chromosome CDS3440137 357 - 0.518207
rpsN b3307 30S ribosomal subunit protein S14chromosome CDS3444601 306 - 0.526144
rpsO b3165 30S ribosomal subunit protein S15chromosome CDS3309437 270 - 0.518519
rpsP b2609 30S ribosomal subunit protein S16chromosome CDS2743959 249 - 0.514056
rpsQ b3311 30S ribosomal subunit protein S17chromosome CDS3446336 255 - 0.47451
rpsR b4202 30S ribosomal subunit protein S18chromosome CDS4423862 228 + 0.526316
rpsS b3316 30S ribosomal subunit protein S19chromosome CDS3448270 279 - 0.487455
rpsT b0023 30S ribosomal subunit protein S20chromosome CDS20815 264 - 0.465909
rpsU b3065 30S ribosomal subunit protein S21chromosome CDS3208803 216 + 0.518519
rrmB b3289 16S rRNA m5C967 methyltransferasechromosome CDS3433229 1290 + 0.496899
rrmJ b3179 23 S rRNA methyltransferasechromosome CDS3325057 630 - 0.504762
rsmC b4371 16S rRNA m2G1207 methylasechromosome CDS4604692 1032 - 0.557171
rsuA b2183 16S pseudouridylate 516 synthasechromosome CDS2277810 696 - 0.528736
rumA b2785 23S rRNA (uracil-5-)-methyltransferasechromosome CDS2911721 1302 - 0.514593
selB b3590 selenocysteinyl-tRNA-specific translation factorchromosome CDS3756040 1845 - 0.563686
serS b0893 serine tRNA synthetase; also charges selenocystein tRNA with serinechromosome CDS938651 1293 + 0.526682
smpA b2617 small membrane protein Achromosome CDS2751816 153 + 0.464052
speG b1584 spermidine N1-acetyltransferasechromosome CDS1654208 561 + 0.468806
srmB b2576 ATP-dependent RNA helicasechromosome CDS2710918 1335 + 0.547566
tadA b2559 tRNA-specific adenosine deaminasechromosome CDS2695376 537 - 0.541899
tdcF b3113 conserved proteinchromosome CDS3257743 453 - 0.525386
tgt b0406 tRNA-guanine transglycosylasechromosome CDS425361 1128 + 0.513298
thrS b1719 threonine tRNA synthetasechromosome CDS1798666 1929 - 0.495594
trmA b3965 tRNA (uracil-5-)-methyltransferasechromosome CDS4160193 1101 - 0.508629
trmD b2607 tRNA methyltransferase; tRNA (guanine-7-)-methyltransferasechromosome CDS2742594 768 - 0.533854
trmH b3651 tRNA (Guanosine-2'-O-)-methyltransferasechromosome CDS3822538 690 + 0.553623
trmU b1133 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS1191890 1152 - 0.534722
trpS b3384 tryptophan tRNA synthetasechromosome CDS3510656 1005 - 0.520398
truA b2318 pseudouridylate synthase Ichromosome CDS2432846 813 - 0.553506
truB b3166 tRNA pseudouridine 5S synthasechromosome CDS3309855 945 - 0.524868
tsf b0170 protein chain elongation factor EF-Tschromosome CDS190857 852 + 0.498826
tufA b3339 protein chain elongation factor EF-Tuchromosome CDS3468167 1185 - 0.532489
tufB b3980 protein chain elongation factor EF-Tuchromosome CDS4173967 1185 + 0.534177
tyrS b1637 tyrosine tRNA synthetasechromosome CDS1713972 1275 - 0.515294
valS b4258 valine tRNA synthetasechromosome CDS4479005 2856 - 0.545868
yadB b0144 putative tRNA synthetasechromosome CDS159186 927 - 0.536138
yaeJ b0191 orf, hypothetical proteinchromosome CDS214833 423 + 0.541371
ybfP b0689 putative pectinasechromosome CDS714635 495 + 0.454545
ybjF b0859 putative enzymechromosome CDS897741 1128 + 0.546099
ycdK b1010 hypothetical proteinchromosome CDS1070996 387 - 0.540052
ychF b1203 putative GTP-binding proteinchromosome CDS1255944 1092 - 0.510073
yciH b1282 orf, hypothetical proteinchromosome CDS1340679 330 + 0.49697
yciL b1269 orf, hypothetical proteinchromosome CDS1324876 876 + 0.537671
yciO b1267 orf, hypothetical proteinchromosome CDS1322086 657 + 0.484018
yebU b1835 orf, hypothetical proteinchromosome CDS1918241 1446 + 0.517981
yeiP b2171 putative elongation factorchromosome CDS2263217 828 + 0.506039
yfbG b2255 putative transformylasechromosome CDS2366061 1983 + 0.511346
yfcB b2330 putative adenine-specific methylasechromosome CDS2445530 1266 - 0.512638
yfhQ b2532 hypothetical tRNA/rRNA methyltransferasechromosome CDS2660605 741 - 0.554656
yfiA b2597 putative yhbH sigma 54 modulatorchromosome CDS2735176 342 + 0.461988
yfiF b2581 orf, hypothetical proteinchromosome CDS2715513 1038 - 0.56262
ygjO b3084 putative enzymechromosome CDS3232761 1167 - 0.535561
yhbH b3203 probable sigma-54 modulation proteinchromosome CDS3344195 288 + 0.447917
yhbY b3180 orf, hypothetical proteinchromosome CDS3325812 294 + 0.486395
yhdG b3260 putative dehydrogenasechromosome CDS3408302 966 + 0.522774
yibK b3606 orf, hypothetical proteinchromosome CDS3779238 474 + 0.550633
yjbC b4022 orf, hypothetical proteinchromosome CDS4228377 873 + 0.515464
yjbN b4049 orf, hypothetical proteinchromosome CDS4259692 1038 + 0.536609
yjeA b4155 putative lysyl-tRNA synthetasechromosome CDS4380636 1008 + 0.522817
yjeJ b4145 orf, hypothetical proteinchromosome CDS4371388 870 - 0.451724
yjfH b4180 orf, hypothetical proteinchromosome CDS4407298 732 + 0.562842
yjgF b4243 orf, hypothetical proteinchromosome CDS4468550 426 - 0.516432
yjgH b4248 orf, hypothetical proteinchromosome CDS4470837 396 - 0.472222
ykgM b0296 putative ribosomal proteinchromosome CDS311738 264 - 0.458333
yleA b0661 orf, hypothetical proteinchromosome CDS692754 1425 - 0.541754
yliG b0835 orf, hypothetical proteinchromosome CDS875933 1326 - 0.526395
ymfC b1135 orf, hypothetical proteinchromosome CDS1193521 624 - 0.519231
ymjA b1295 orf, hypothetical proteinchromosome CDS1355447 246 - 0.48374
yoaB b1809 orf, hypothetical proteinchromosome CDS1891343 393 + 0.503817
yohI b2140 putative regulator proteinchromosome CDS2227460 948 - 0.542194
yqcB b2791 orf, hypothetical proteinchromosome CDS2921024 783 - 0.54023
yrdC b3282 orf, hypothetical proteinchromosome CDS3428865 573 - 0.521815