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2024-04-29 07:59:37

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Bacteroides fragilis NCTC 9343, ATCC 25285 = NCTC 9343

Number of genes found: 184

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Bacteroides fragilis NCTC 9343, ATCC 25285 = NCTC 9343
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA BF3442 putative polyA polymerasechromosome CDS4063161 1446 - 0.471646
NA BF2733 putative lipoproteinchromosome CDS3180926 1236 - 0.458738
NA BF1923 conserved hypothetical exported proteinchromosome CDS2242357 315 + 0.377778
NA BF3109 putative exported proteinchromosome CDS3628918 1038 + 0.480732
NA BF0513 putative 50S ribosomal proteinchromosome CDS594597 354 - 0.420904
NA BF0069 putative tRNA pseudouridine synthasechromosome CDS67081 702 + 0.467236
NA BF1056 putative ribosomal large subunit pseudouridine synthasechromosome CDS1310211 1620 - 0.457407
NA BF2398 hypothetical proteinchromosome CDS2798514 435 - 0.347126
NA BF0907 putative Sua5/yciO/yrdC family proteinchromosome CDS1135303 615 - 0.486179
NA BF0150 conserved hypothetical proteinchromosome CDS156456 933 - 0.4791
NA BF2569 putative RNA pseudouridylate synthasechromosome CDS2995882 918 + 0.494553
NA BF3675 conserved hypothetical proteinchromosome CDS4340965 564 - 0.466312
NA BF0070 putative S-adenosylmethionine:tRNA ribosyltransferase-isomerasechromosome CDS67830 1059 + 0.433428
NA BF0556 putative L-asparaginase Ichromosome CDS662870 1026 - 0.489279
NA BF3931 putative ribosomal large subunit pseudouridine synthasechromosome CDS4637517 666 - 0.430931
NA BF4120 putative acetyltransferasechromosome CDS4848197 531 + 0.346516
NA BF0026 hypothetical proteinchromosome CDS32311 330 - 0.415152
NA BF3494 putative 16S rRNA processing proteinchromosome CDS4116999 543 - 0.458564
NA BF1668 putative ATP-dependent RNA helicasechromosome CDS1940577 1284 - 0.450156
NA BF2162 putative exported proteinchromosome CDS2516326 504 + 0.410714
NA BF2811 putative exported proteinchromosome CDS3271638 1302 + 0.467742
NA BF2568 putative RNA methyltransferasechromosome CDS2994453 1419 + 0.475687
NA BF2183 putative exported proteinchromosome CDS2537373 1452 + 0.473829
NA BF3636 putative elongation factor Gchromosome CDS4291801 2157 - 0.476124
NA BF4077 conserved hypothetical proteinchromosome CDS4799698 1473 - 0.425662
NA BF3783 putative translation initation factorchromosome CDS4465440 351 + 0.452991
NA BF3654 putative S-adenosylmethionine:tRNA ribosyltransferase-isomerasechromosome CDS4310321 1224 + 0.466503
NA BF4365 putative ATP/GTP-binding proteinchromosome CDS5190269 1104 + 0.459239
NA BF2117 hypothetical proteinchromosome CDS2470469 288 - 0.371528
NA BF0001 putative SpoU rRNA methylase family proteinchromosome CDS67 528 + 0.407197
NA BF3695 putative nucleotidyltransferasechromosome CDS4357981 717 - 0.324965
NA BF3886 putative membrane proteinchromosome CDS4573933 297 - 0.441077
NA BF0174 putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferasechromosome CDS190264 1095 + 0.423744
NA BF3238 putative histidyl-tRNA synthetasechromosome CDS3809735 1365 - 0.434432
NA BF4025 putative ribosomal protein S21chromosome CDS4728521 192 - 0.34375
NA BF2507 putative oxidoreductasechromosome CDS2915711 1299 - 0.384142
NA BF2851 conserved hypothetical translation inhibitor proteinchromosome CDS3313385 375 - 0.485333
NA BF0453 putative protoporphyrinogen oxidasechromosome CDS533939 837 + 0.452808
NA BF2108 putative acetyltransferasechromosome CDS2463566 540 + 0.396296
NA BF3010 putative exported proteinchromosome CDS3500585 2166 + 0.430286
NA BF4152 putative phosphoribulose/uridine kinasechromosome CDS4887823 1665 + 0.431231
NA BF0637 possible cytosine deaminasechromosome CDS772250 438 + 0.474886
NA BF0432 50S ribosomal protein L34chromosome CDS514274 162 + 0.438272
NA BF0938 putative tRNA delta(2)-isopentenylpyrophosphate transferasechromosome CDS1173154 921 - 0.457112
NA BF0134 putative RNA helicase dead-box proteinchromosome CDS140054 1944 - 0.490741
NA BF0624 possible Hsp-70 cofactorchromosome CDS761279 849 - 0.383981
NA BF1164 putative ribosomal L25p family stress proteinchromosome CDS1421890 591 - 0.407783
NA BF1170 conserved hypothetical proteinchromosome CDS1426141 417 + 0.366906
NA BF4353 putative TIM-barrel protein, possible dihydrouridine synthasechromosome CDS5177786 975 + 0.514872
NA BF4023 putative sigma(54) modulation proteinchromosome CDS4727252 300 - 0.36
NA BF0777 possible endoribonucleasechromosome CDS952333 1131 + 0.5084
NA BF2372 putative tRNA/rRNA methyltransferasechromosome CDS2767920 762 - 0.393701
NA BF2726 putative peptide chain release factorchromosome CDS3173249 621 - 0.484702
NA BF2325 putative DNA primasechromosome CDS2717731 3054 - 0.436477
NA BF2853 putative tRNA:rRNA methyltransferasechromosome CDS3315783 741 - 0.454791
NA BF3309 putative acetyltransferasechromosome CDS3904991 543 + 0.421731
NA BF1327 conserved hypothetical proteinchromosome CDS1590358 2574 - 0.413753
NA BF3791 putative ribosomal large subunit pseudouridine synthasechromosome CDS4471397 1401 - 0.47823
NA BF0445 conserved hypothetical proteinchromosome CDS525585 237 - 0.447257
NA BF2309 hypothetical proteinchromosome CDS2705822 492 + 0.406504
NA BF2576 putative aminopeptidasechromosome CDS3001142 855 + 0.449123
NA BF1940 conserved hypothetical proteinchromosome CDS2263143 1011 + 0.493571
NA BF2874 putative exported proteinchromosome CDS3339371 1404 - 0.587607
NA BF3627 conserved hypothetical proteinchromosome CDS4282951 1320 - 0.491667
NA BF0756 conserved hypothetical proteinchromosome CDS918777 1548 + 0.413437
NA BF0321 putative peptide chain release factorchromosome CDS379054 960 + 0.453125
NA BF1212 conserved hypothetical exported proteinchromosome CDS1475297 468 + 0.482906
NA BF0930 putative 50S ribosomal protein L21chromosome CDS1163502 318 - 0.40566
NA BF0762 hypothetical proteinchromosome CDS930219 1794 + 0.410256
NA BF2724 conserved hypothetical proteinchromosome CDS3171401 1113 - 0.477987
NA BF0906 hypothetical proteinchromosome CDS1134814 426 - 0.389671
NA BF4213 conserved hypothetical proteinchromosome CDS4977652 1659 - 0.423146
NA BF0948 putative 3'-5' exonucleasechromosome CDS1184103 651 - 0.436252
NA BF3694 putative nucleotidyltransferasechromosome CDS4357247 732 - 0.329235
NA BF0599 conserved hypothetical proteinchromosome CDS726703 1992 + 0.482932
NA BF2831 hypothetical proteinchromosome CDS3290147 615 - 0.442276
NA BF0219 putative translation initiation factor IF-2chromosome CDS237064 3048 + 0.43832
NA BF1468 putative bacteriophage-related replication proteinchromosome CDS1735881 1110 + 0.528829
NA BF1645 putative nucleotide deaminasechromosome CDS1920897 468 - 0.478632
NA BF0027 putative SAM/TRAM family methylase proteinchromosome CDS32971 1374 + 0.467249
NA BF0076 possible ribonuclease P componentchromosome CDS73484 324 + 0.419753
NA BF1278 putative SpoU-like rRNA methylasechromosome CDS1531513 813 + 0.473555
NA BF2603 putative LPS biosynthesis-related sugar-phosphate nucleotidyltransferasechromosome CDS3028950 777 - 0.365508
NA BF4274 putative ribosome-binding factor Achromosome CDS5074151 333 - 0.384384
NA BF3776 putative tRNA methyltransferasechromosome CDS4459533 1089 - 0.529844
NA BF2751 hypothetical proteinchromosome CDS3207636 477 + 0.444444
alaS BF0689 putative alanyl-tRNA synthetasechromosome CDS843422 2619 - 0.472699
ansA BF2680 putative L-asparaginase Ichromosome CDS3120537 1047 + 0.469914
ansB BF4039 putative L-asparaginase II precursorchromosome CDS4746952 1059 + 0.481586
argS BF4219 putative arginyl-tRNA synthetasechromosome CDS4988754 1794 - 0.471572
asnS BF3790 asparaginyl-trna synthetasechromosome CDS4469887 1404 - 0.444444
aspS BF2463 aspartyl-tRNA synthetasechromosome CDS2863354 1758 + 0.457907
cysS BF0161 putative cysteinyl-tRNA synthetasechromosome CDS172929 1476 - 0.481707
dbpA BF2071 putative ATP-independent RNA helicasechromosome CDS2423047 1332 + 0.498498
def BF1691 putative peptide deformylasechromosome CDS1968900 555 + 0.409009
dtd BF0110 putative D-tyrosyl-tRNA acylasechromosome CDS114886 453 - 0.406181
efp BF0431 putative elongation factor Pchromosome CDS513514 567 - 0.451499
fmt BF3673 putative methionyl-tRNA formyltransferasechromosome CDS4338106 975 - 0.454359
frr BF0619 putative ribosome recycling factorchromosome CDS754508 561 - 0.465241
fusA BF4005 putative translation elongation factor Gchromosome CDS4707403 2118 - 0.446176
glnS BF2773 glutaminyl-tRNA synthetasechromosome CDS3231448 1749 + 0.521441
gltX BF4030 putative glutamyl-tRNA synthetasechromosome CDS4732693 1518 - 0.461792
glyS BF0354 putative glycyl-tRNA synthetasechromosome CDS429964 1542 + 0.446174
hslR BF1162 putative ribosome-associated heat shock proteinchromosome CDS1420768 426 - 0.422535
ileS BF2367 isoleucyl-tRNA synthetasechromosome CDS2761981 3426 + 0.411851
infA BF3981 putative translation initiation factor IF-1chromosome CDS4695668 219 - 0.342466
infC BF1695 putative translation initiation factor IF-3chromosome CDS1975272 612 + 0.398693
ksgA BF0706 putative dimethyladenosine transferasechromosome CDS864395 819 - 0.426129
leuS BF4372 putative Leucyl-tRNA synthetasechromosome CDS5198827 2832 + 0.445621
lysU BF3602 putative lysyl-tRNA synthetase, heat induciblechromosome CDS4250619 1728 + 0.459491
map BF3982 putative methionine aminopeptidasechromosome CDS4695890 798 - 0.422306
miaA BF0825 putative tRNA delta(2)-isopentenylpyrophosphate transferasechromosome CDS1019290 906 - 0.437086
pheS BF3104 putative phenylalanyl-tRNA synthetase alpha chainchromosome CDS3623521 1020 + 0.502941
pnpA BF4129 putative polyribonucleotide nucleotidyltransferasechromosome CDS4856811 2127 + 0.445698
prfA BF0832 putative peptide chain release factor 1chromosome CDS1026381 1113 - 0.4708
prfC BF1297 putative peptide chain release factor 3chromosome CDS1554916 1575 + 0.466667
prmA BF1638 putative ribosomal protein L11 methyltransferasechromosome CDS1911559 843 - 0.472123
proS BF2515 prolyl-tRNA synthetasechromosome CDS2926352 1494 - 0.454485
pth BF1163 putative peptidyl-tRNA hydrolasechromosome CDS1421220 564 - 0.411348
rhlE BF2388 putative ATP-dependent RNA helicasechromosome CDS2787273 1257 - 0.417661
rluD BF0434 ribosomal large subunit pseudouridine synthasechromosome CDS515318 1074 + 0.47486
rne BF1566 putative ribonuclease Echromosome CDS1822486 1575 - 0.43746
rplA BF4018 putative 50S ribosomal protein L1chromosome CDS4723393 699 - 0.402003
rplB BF4000 putative 50S ribosomal protein L2chromosome CDS4704617 825 - 0.450909
rplC BF4003 putative 50S ribosomal protein L3chromosome CDS4706380 618 - 0.435275
rplD BF4002 putative 50S ribosomal protein L4chromosome CDS4705754 627 - 0.403509
rplE BF3991 putative 50S ribosomal protein L5chromosome CDS4700948 558 - 0.390681
rplF BF3988 putative 50S ribosomal protein L6chromosome CDS4699607 570 - 0.382456
rplI BF3630 putative 50S ribosomal protein L9chromosome CDS4287072 444 - 0.38964
rplJ BF4017 putative 50S ribosomal protein L10chromosome CDS4722865 513 - 0.401559
rplK BF4019 putative 50S ribosomal protein L11chromosome CDS4724107 444 - 0.434685
rplL BF4016 putative 50S ribosomal protein L7/L12chromosome CDS4722442 375 - 0.418667
rplM BF3787 putative 50S ribosomal protein L13chromosome CDS4468446 462 - 0.406926
rplN BF3993 putative 50S ribosomal protein L14chromosome CDS4701846 366 - 0.42623
rplO BF3984 putative 50S ribosomal protein L15chromosome CDS4698053 447 - 0.378076
rplP BF3996 putative 50S ribosomal protein L16chromosome CDS4702683 435 - 0.425287
rplQ BF3975 putative 50S ribosomal protein L17chromosome CDS4692510 486 - 0.415638
rplR BF3987 putative 50S ribosomal protein L18chromosome CDS4699241 345 - 0.4
rplT BF1697 putative 50S ribosomal protein L20chromosome CDS1976247 351 + 0.418803
rplV BF3998 putative 50S ribosomal protein L22chromosome CDS4703881 357 - 0.408964
rplW BF4001 putative 50S ribosomal protein L23chromosome CDS4705447 291 - 0.350515
rplX BF3992 putative 50S ribosomal protein L24chromosome CDS4701505 321 - 0.373832
rpmA BF0929 putative 50S ribosomal protein L27chromosome CDS1163210 270 - 0.433333
rpmB BF2510 50S ribosomal protein L28chromosome CDS2918508 261 - 0.386973
rpmC BF3995 putative 50S ribosomal protein L29chromosome CDS4702480 198 - 0.348485
rpmD BF3985 putative 50S ribosomal protein L30chromosome CDS4698530 177 - 0.38983
rpmE BF3140 50S ribosomal protein L31chromosome CDS3661056 252 + 0.392857
rpmG BF2509 50S ribosomal protein L33chromosome CDS2918293 189 - 0.349206
rpmI BF1696 putative 50S ribosomal protein L35chromosome CDS1975949 198 + 0.363636
rpmJ BF3980 putative 50S ribosomal protein L36chromosome CDS4695543 117 - 0.333333
rpsA BF0959 putative 30S ribosomal protein S1chromosome CDS1199461 1794 + 0.432553
rpsB BF3785 putative 30S ribosomal protein S2chromosome CDS4467096 837 - 0.421744
rpsC BF3997 putative 30S ribosomal protein S3chromosome CDS4703141 735 - 0.409524
rpsD BF3977 putative 30S ribosomal protein S4chromosome CDS4694003 606 - 0.405941
rpsE BF3986 putative 30S ribosomal protein S5chromosome CDS4698717 519 - 0.404624
rpsF BF3632 putative 30S ribosomal protein S6chromosome CDS4287802 345 - 0.373913
rpsG BF4006 putative 30S ribosomal protein S7chromosome CDS4709574 477 - 0.406709
rpsH BF3989 putative 30S ribosomal protein S8chromosome CDS4700192 396 - 0.343434
rpsI BF3786 putative 30S ribosomal protein S9chromosome CDS4468053 387 - 0.444444
rpsJ BF4004 putative 30S ribosomal protein S10chromosome CDS4707016 306 - 0.408497
rpsK BF3978 putative 30S ribosomal protein S11chromosome CDS4694728 390 - 0.407692
rpsL BF4007 putative 30S ribosomal protein S12chromosome CDS4710210 402 - 0.487562
rpsM BF3979 putative 30S ribosomal protein S13chromosome CDS4695129 381 - 0.396325
rpsN BF3990 putative 30S ribosomal protein S14chromosome CDS4700642 300 - 0.44
rpsO BF4259 putative 30S ribosomal protein S15chromosome CDS5054313 270 + 0.407407
rpsP BF2731 putative 30S ribosomal protein S16chromosome CDS3179871 546 + 0.454212
rpsQ BF3994 putative 30S ribosomal protein S17chromosome CDS4702214 270 - 0.37037
rpsR BF3631 putative 30S ribosomal protein S18chromosome CDS4287527 273 - 0.40293
rpsS BF3999 putative 30S ribosomal protein S19chromosome CDS4704327 270 - 0.374074
rpsT BF0247 30S ribosomal protein S20chromosome CDS276015 255 - 0.34902
serS BF0928 putative seryl-tRNA synthetasechromosome CDS1161779 1275 - 0.459608
tgt BF2392 queuine tRNA-ribosyltransferasechromosome CDS2791881 1131 - 0.450928
thrS BF1694 putative threonyl-tRNA synthetasechromosome CDS1973213 1941 + 0.438949
trmD BF2484 putative tRNA (guanine-N(1)-)-methyltransferasechromosome CDS2885125 678 - 0.432153
trmU BF1343 putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferasechromosome CDS1604507 1062 + 0.467043
trpS BF3809 putative tryptophanyl-tRNA synthetasechromosome CDS4498525 1092 + 0.481685
truA BF0847 putative tRNA pseudouridine synthase Achromosome CDS1041749 759 + 0.444005
tsf BF3784 putative elongation factor TSchromosome CDS4465980 993 - 0.437059
tuf BF4022 Elongation factor Tuchromosome CDS4725502 1185 - 0.440506
tyrS BF0079 putative tyrosyl-tRNA synthetase 1chromosome CDS74735 1293 + 0.437742
upeY BF2606 putative transcriptional regulatory proteinchromosome CDS3031735 519 - 0.421965
upgY BF0731 putative transcriptional regulatorchromosome CDS894922 537 + 0.430168
uphY BF3466 putative LPS biosynthesis related transcriptional regulatory proteinchromosome CDS4090896 540 - 0.522222
valS BF0966 putative valyl-tRNA synthetasechromosome CDS1205947 2631 + 0.473204