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2024-05-03 15:20:26

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Candidatus Pelagibacter ubique HTCC1062, HTCC1062

Number of genes found: 118

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Candidatus Pelagibacter ubique HTCC1062, HTCC1062
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SAR11_0263 amidasechromosome CDS263780 1338 - 0.328102
NA SAR11_1085 Endoribonuclease L-PSPchromosome CDS1051828 462 + 0.320346
NA SAR11_0194 nucleotidyltransferase family proteinchromosome CDS195106 690 - 0.218841
NA SAR11_1131 SpoU rRNA Methylase familychromosome CDS1087091 744 + 0.293011
NA SAR11_1039 unknownchromosome CDS1011092 465 + 0.253763
NA SAR11_0565 hypothetical proteinchromosome CDS556386 366 + 0.26776
NA SAR11_0391 ribosomal protein S15chromosome CDS382936 249 + 0.257028
NA SAR11_1016 unknownchromosome CDS995434 675 + 0.217778
NA SAR11_0097 Predicted GTPasechromosome CDS109411 1074 + 0.3054
NA SAR11_1146 SpoU rRNA Methylase familychromosome CDS1099291 714 - 0.273109
NA SAR11_0608 Sua5/YciO/YrdC family proteinchromosome CDS594493 933 - 0.287245
NA SAR11_1193 conserved hypothetical proteinchromosome CDS1144265 993 - 0.327291
alaS SAR11_0643 alanine-tRNA ligasechromosome CDS628540 2670 + 0.310112
argS SAR11_0970 arginine-tRNA ligasechromosome CDS952702 1734 + 0.273356
aspS SAR11_0722 asparaginyl-tRNA synthetasechromosome CDS705131 1785 + 0.307003
csn1 SAR11_0703 LSU ribosomal protein L9Pchromosome CDS688798 459 - 0.248366
cysS SAR11_1148 cysteinyl-tRNA synthetasechromosome CDS1101602 1362 - 0.279001
def SAR11_0456 peptide deformylasechromosome CDS451748 519 + 0.289017
efp SAR11_0582 Elongation factor P (EF-P)chromosome CDS570365 561 - 0.2959
fmt SAR11_0457 Methionyl-tRNA formyltransferasechromosome CDS452267 933 + 0.28403
ftsJ SAR11_0648 FtsJ-like methyltransferasechromosome CDS634861 612 + 0.29902
fusA SAR11_1119 translation elongation factor EF-Gchromosome CDS1071259 2079 - 0.345839
gatA SAR11_1077 glutamyl-tRNA(Gln) amidotransferase subunit Achromosome CDS1043797 1458 - 0.314129
gatB SAR11_1076 glutamyl-tRNA(gln) amidotransferase chain Bchromosome CDS1042318 1479 - 0.303584
gatC SAR11_1078 Glu-tRNAGln amidotransferase C subunitchromosome CDS1045254 288 - 0.28125
gltX SAR11_0920 glutamyl-tRNA synthetasechromosome CDS884939 1401 - 0.276231
glyQ SAR11_0616 Glycyl-tRNA synthetase alpha subunitchromosome CDS602136 885 + 0.329944
glyRS SAR11_0617 Glycyl-tRNA synthetase beta subunitchromosome CDS603020 2070 + 0.27343
gshB SAR11_0697 glutathione synthasechromosome CDS680622 930 - 0.246237
hemK SAR11_0519 HemKchromosome CDS508393 843 + 0.2586
hisS SAR11_0478 Histidyl-tRNA synthetasechromosome CDS467248 1398 + 0.292561
ileS SAR11_0158 Isoleucyl-tRNA synthetasechromosome CDS159680 2718 - 0.306475
infA SAR11_0476 translation initiation factor if-1chromosome CDS466335 216 + 0.365741
infB SAR11_0389 bacterial protein translation initiation factor 2 (IF-2)chromosome CDS380350 2205 + 0.336961
infC SAR11_0439 translation initiation factor IF-3chromosome CDS433723 546 + 0.294872
ksgA SAR11_0710 Dimethyladenosine transferasechromosome CDS692569 789 - 0.283904
leuS SAR11_0357 Leucyl-tRNA synthetasechromosome CDS348696 2535 - 0.297436
lysS SAR11_0210 lysine-tRNA ligasechromosome CDS210951 1578 - 0.297845
map SAR11_1136 methionine aminopeptidasechromosome CDS1090764 771 + 0.330739
metS SAR11_1001 methionyl-tRNA synthetasechromosome CDS980814 1542 + 0.280156
miaA SAR11_0004 tRNA isopentenyltransferasechromosome CDS3891 942 - 0.269639
miaB SAR11_0383 tRNA-i(6)A37 modification enzymechromosome CDS373181 1341 + 0.273676
pcnB SAR11_0104 Poly(A) Polymerase (PAP)chromosome CDS114873 1275 - 0.253333
pheS SAR11_0442 phenylalanyl-tRNA synthetase alpha chainchromosome CDS434930 1068 + 0.294007
pnp SAR11_0392 polyribonucleotide nucleotidyltransferasechromosome CDS383206 2073 + 0.34684
prfA SAR11_0518 protein release factor Class I (RF-1)chromosome CDS507318 1074 + 0.324022
prfB SAR11_0733 bacterial peptide chain release factor 2 (RF-2)chromosome CDS716320 855 + 0.318129
proS SAR11_0902 proline-tRNA ligasechromosome CDS866512 1335 + 0.290637
pth SAR11_0096 Peptidyl-tRNA hydrolasechromosome CDS108851 561 + 0.28164
rbfA SAR11_0390 Ribosome-binding factor Achromosome CDS382554 369 + 0.289973
rlhE SAR11_0164 probable ATP-dependent RNA helicasechromosome CDS166432 1749 - 0.331046
rluC SAR11_1091 ribosomal large subunit pseudouridine synthase Cchromosome CDS1057276 915 - 0.276503
rnd SAR11_0498 ribonuclease Dchromosome CDS486007 612 - 0.297386
rne SAR11_0731 ribonuclease E/Gchromosome CDS711784 1860 - 0.290323
rplA SAR11_1126 ribosomal protein L1chromosome CDS1083578 690 - 0.3
rplB SAR11_1114 50S ribosomal protein L2 rplBchromosome CDS1068466 846 - 0.355792
rplC SAR11_1117 50S ribosomal protein L3chromosome CDS1070232 711 - 0.300985
rplD SAR11_1116 ribosomal protein L4chromosome CDS1069609 624 - 0.253205
rplE SAR11_1105 50S ribosomal protein L5chromosome CDS1065105 555 - 0.288288
rplF SAR11_1102 ribosomal protein L6chromosome CDS1063852 540 - 0.32037
rplJ SAR11_1125 LSU ribosomal protein L10Pchromosome CDS1083072 501 - 0.331337
rplK SAR11_1127 ribosomal protein L11chromosome CDS1084267 426 - 0.352113
rplL SAR11_1124 probable 50S ribosomal protein L31chromosome CDS1082679 366 - 0.379781
rplM SAR11_1029 ribosomal protein L13chromosome CDS1005217 462 - 0.298701
rplN SAR11_1107 50S ribosomal protein L14chromosome CDS1065908 369 - 0.333333
rplO SAR11_1099 50S ribosomal protein L15chromosome CDS1062520 462 - 0.290043
rplP SAR11_1110 50S ribosomal protein L16chromosome CDS1066695 411 - 0.355231
rplQ SAR11_1092 ribosomal protein L17chromosome CDS1058215 438 - 0.30137
rplR SAR11_1101 ribosomal protein L18chromosome CDS1063496 357 - 0.27451
rplS SAR11_0253 50S ribosomal protein L19chromosome CDS257077 495 - 0.29495
rplT SAR11_0441 50S ribosomal protein L20chromosome CDS434530 357 + 0.322129
rplU SAR11_0220 50S ribosomal protein L21chromosome CDS220837 405 + 0.291358
rplV SAR11_1112 50S ribosomal protein L22chromosome CDS1067772 399 - 0.285714
rplW SAR11_1115 ribosomal protein L23chromosome CDS1069314 294 - 0.258503
rplX SAR11_1106 probable 50S ribosomal protein L24chromosome CDS1065659 249 - 0.285141
rplY SAR11_0095 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5chromosome CDS108119 687 + 0.3377
rpmA SAR11_0221 50S ribosomal protein L27chromosome CDS221254 255 + 0.380392
rpmB SAR11_0208 50S ribosomal protein L28chromosome CDS209522 324 - 0.262346
rpmC SAR11_1109 Ribosomal L29 proteinchromosome CDS1066502 192 - 0.203125
rpmE SAR11_0580 probable 50S ribosomal protein L31chromosome CDS569353 231 - 0.341991
rpmF SAR11_1037 50S ribosomal protein L32chromosome CDS1010436 183 - 0.360656
rpmG SAR11_1033 ribosomal protein L33chromosome CDS1008558 192 - 0.322917
rpmI SAR11_0440 50S ribosomal protein L35chromosome CDS434322 207 + 0.31401
rpmJ SAR11_0573 ribosomal protein L36chromosome CDS564660 126 + 0.253968
rpsA SAR11_0492 30S ribosomal protein S1chromosome CDS479960 1731 - 0.306181
rpsB SAR11_0907 probable 30S ribosomal protein S2chromosome CDS873284 822 + 0.310219
rpsC SAR11_1111 30S ribosomal protein S3chromosome CDS1067108 681 - 0.302496
rpsD SAR11_1145 30S ribosomal protein S4chromosome CDS1098633 618 - 0.305825
rpsE SAR11_1100 ribosomal protein S5chromosome CDS1062981 513 - 0.34308
rpsF SAR11_0705 ribosomal protein S6chromosome CDS689538 366 - 0.251366
rpsG SAR11_1120 30S ribosomal protein S7chromosome CDS1073344 471 - 0.303609
rpsH SAR11_1103 30S ribosomal protein S8chromosome CDS1064391 396 - 0.308081
rpsI SAR11_1028 ribosomal protein S9chromosome CDS1004766 450 - 0.342222
rpsJ SAR11_1118 30S ribosomal protein S10chromosome CDS1070945 309 - 0.304207
rpsK SAR11_1094 ribosomal protein S11chromosome CDS1059684 453 - 0.317881
rpsL SAR11_1121 30S ribosomal protein S12chromosome CDS1073817 372 - 0.346774
rpsM SAR11_1095 30S ribosomal protein S13chromosome CDS1060144 384 - 0.307292
rpsN SAR11_1104 30S ribosomal protein S14chromosome CDS1064797 306 - 0.313726
rpsP SAR11_0255 30S ribosomal protein S16chromosome CDS258283 534 - 0.413858
rpsQ SAR11_1108 ribosomal protein S17chromosome CDS1066273 237 - 0.270042
rpsR SAR11_0704 ribosomal protein S18chromosome CDS689257 279 - 0.286738
rpsS SAR11_1113 30S ribosomal protein S19chromosome CDS1068173 294 - 0.302721
rpsT SAR11_0409 ribosomal protein S20chromosome CDS398173 261 + 0.302682
rpsU SAR11_0578 30S ribosomal protein S21chromosome CDS568515 195 - 0.210256
rrf SAR11_0909 Ribosome recycling factorchromosome CDS874959 552 + 0.28442
serS SAR11_0978 serine-tRNA ligasechromosome CDS958299 1260 + 0.300794
sfhB SAR11_0607 pseudouridylate synthasechromosome CDS593396 981 - 0.29052
spoU SAR11_0101 rRNA Methylasechromosome CDS113110 462 + 0.28355
tgt SAR11_0988 queuine tRNA-ribosyltransferasechromosome CDS970015 1113 + 0.307278
thrS SAR11_0438 Threonyl-tRNA synthetasechromosome CDS431806 1917 + 0.314032
trmD SAR11_0254 tRNA (Guanine-N(1)-)-methyltransferasechromosome CDS257588 687 - 0.342067
trmU SAR11_0828 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS798049 1116 + 0.299283
trpS SAR11_0377 Tryptophanyl-tRNA synthetasechromosome CDS368652 1002 + 0.282435
truA SAR11_0458 tRNA pseudouridine synthase Achromosome CDS453192 741 + 0.261808
tsf SAR11_0908 protein translation elongation factor Ts (EF-Ts)chromosome CDS874107 852 + 0.299296
tufB SAR11_1130 translation elongation factor EF-Tuchromosome CDS1085516 1191 - 0.36356
tyrS SAR11_0735 tyrosyl-tRNA synthetasechromosome CDS719363 1230 - 0.271545
valS SAR11_0960 valine-tRNA ligasechromosome CDS942739 2628 + 0.297184