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2024-05-02 17:28:59

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Escherichia coli O157:H7 EDL933, EDL933

Number of genes found: 189

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Escherichia coli O157:H7 EDL933, EDL933
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Z5118 chromosome CDS4674297 378 - 0.354497
NA Z4107 chromosome CDS3712700 783 - 0.537676
NA Z1494 unknown protein encoded by bacteriophage BP-933Wchromosome CDS1378557 1266 + 0.49763
NA Z1509 orf, hypothetical proteinchromosome CDS1396365 387 - 0.537468
NA Z3518 chromosome CDS3173741 267 - 0.464419
NA Z3799 putative ATP synthase beta subunitchromosome CDS3452924 738 - 0.548781
NA Z1152 putative ribosomal proteinchromosome CDS1084759 264 + 0.42803
NA Z1768 unknown protein encoded by prophage CP-933Nchromosome CDS1628545 633 + 0.42496
NA Z1591 putative ribosomal proteinchromosome CDS1480366 264 + 0.42803
NA Z2852 orf, hypothetical proteinchromosome CDS2570352 393 + 0.508906
NA Z2291 chromosome CDS2071732 297 - 0.40404
NA Z2972 unknown protein encoded by prophage CP-933Tchromosome CDS2671678 279 + 0.426523
NA Z5930 chromosome CDS5445654 447 + 0.478747
alaS Z3999 alanyl-tRNA synthetasechromosome CDS3610595 2637 - 0.535078
ansA Z2801 cytoplasmic L-asparaginase Ichromosome CDS2526366 1017 + 0.505408
ansB Z4302 periplasmic L-asparaginase IIchromosome CDS3908588 1047 - 0.528176
argS Z2929 arginine tRNA synthetasechromosome CDS2637203 1734 + 0.529412
asnS Z1278 asparagine tRNA synthetasechromosome CDS1206279 1401 - 0.526767
aspS Z2919 aspartate tRNA synthetasechromosome CDS2625888 1773 - 0.540327
cafA Z4605 bundles of cytoplasmic filamentschromosome CDS4198504 1488 - 0.521505
cca Z4409 tRNA nucleotidyl transferasechromosome CDS4008734 1239 + 0.563358
cysS Z0681 cysteine tRNA synthetasechromosome CDS646757 1386 + 0.546898
dbpA Z2417 ATP-dependent RNA helicasechromosome CDS2166810 1374 - 0.517467
deaD Z4523 inducible ATP-independent RNA helicasechromosome CDS4115684 1941 - 0.548686
def Z4657 peptide deformylasechromosome CDS4235924 510 + 0.466667
efp Z5752 elongation factor P (EF-P)chromosome CDS5259965 567 + 0.499118
espF Z5100 espFchromosome CDS4658240 747 - 0.543507
fmt Z4658 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferasechromosome CDS4236448 948 + 0.525316
frr Z0183 ribosome releasing factorchromosome CDS196217 558 + 0.508961
ftsJ Z4541 cell division proteinchromosome CDS4136749 630 - 0.504762
fusA Z4698 GTP-binding protein chain elongation factor EF-Gchromosome CDS4258528 2115 - 0.506856
glnS Z0827 glutamine tRNA synthetasechromosome CDS785897 1665 + 0.524324
gltX Z3665 glutamate tRNA synthetase, catalytic subunitchromosome CDS3317632 1416 - 0.530367
glyQ Z4984 glycine tRNA synthetase, alpha subunitchromosome CDS4537806 912 - 0.555921
glyS Z4983 glycine tRNA synthetase, beta subunitchromosome CDS4535727 2070 - 0.55314
gshB Z4292 glutathione synthetasechromosome CDS3900685 948 + 0.531646
hemK Z1983 possible protoporphyrinogen oxidasechromosome CDS1803382 834 + 0.557554
hisS Z3777 histidine tRNA synthetasechromosome CDS3425278 1275 - 0.546667
ileS Z0030 isoleucine tRNA synthetasechromosome CDS26803 2817 + 0.556975
infA Z1228 protein chain initiation factor IF-1chromosome CDS1146525 219 - 0.484018
infB Z4529 protein chain initiation factor IF-2chromosome CDS4123056 2673 - 0.533857
infC Z2747 Initiation factor IF-3chromosome CDS2475011 435 - 0.478161
ksgA Z0060 S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferasechromosome CDS56585 822 - 0.53163
lasT Z6006 orf, hypothetical proteinchromosome CDS5527735 687 + 0.496361
leuS Z0789 leucine tRNA synthetasechromosome CDS753340 2583 - 0.531165
lysS Z4228 lysine tRNA synthetase, constitutive; suppressor of ColE1 mutation in primer RNAchromosome CDS3839114 1518 - 0.523715
lysU Z5732 lysine tRNA synthetase, inducible; heat shock proteinchromosome CDS5237635 1518 - 0.478261
map Z0178 methionine aminopeptidasechromosome CDS192199 795 - 0.498113
metG Z3282 methionine tRNA synthetasechromosome CDS2940261 2034 + 0.526057
miaA Z5778 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferasechromosome CDS5282962 951 + 0.534175
pcnB Z0154 poly(A) polymerase Ichromosome CDS162052 1365 - 0.559707
pheS Z2743 phenylalanine tRNA synthetase, alpha-subunitchromosome CDS2472875 984 - 0.54065
pmrD Z3519 polymyxin resistance protein Bchromosome CDS3173741 297 - 0.447811
pnp Z4525 polynucleotide phosphorylase; cytidylate kinase activitychromosome CDS4118746 2205 - 0.534694
prfA Z1982 peptide chain release factor RF-1chromosome CDS1802300 1083 + 0.529086
prfB Z4229 peptide chain release factor RF-2chromosome CDS3840641 1099 - 0.535032
prfC Z5976 peptide chain release factor RF-3chromosome CDS5497454 1590 + 0.539623
prfH Z0297 probable peptide chain release factorchromosome CDS291590 501 + 0.552894
prmA Z4619 methylase for 50S ribosomal subunit protein L11chromosome CDS4211248 882 + 0.544218
proS Z0206 proline tRNA synthetasechromosome CDS220389 1719 - 0.545084
pth Z1975 peptidyl-tRNA hydrolasechromosome CDS1795217 585 - 0.500855
queA Z0504 synthesis of queuine in tRNA; probably S-adenosylmethionine:tRNA ribosyltransferase-isomerasechromosome CDS488643 1071 + 0.54155
rbfA Z4528 ribosome-binding factor Achromosome CDS4122490 402 - 0.524876
rhlB Z5290 putative ATP-dependent RNA helicasechromosome CDS4826756 1266 - 0.525276
rhlE Z1017 putative ATP-dependent RNA helicasechromosome CDS954892 1368 + 0.562865
rimJ Z1703 acetylation of N-terminal alanine of 30S ribosomal subunit protein S5chromosome CDS1569792 585 + 0.497436
rimK Z1079 ribosomal protein S6 modification proteinchromosome CDS1018913 903 + 0.559247
rmf Z1303 ribosome modulation factorchromosome CDS1234409 168 + 0.541667
rna Z0755 RNase I, cleaves phosphodiester bond between any two nucleotideschromosome CDS725333 807 - 0.515489
rnd Z2847 RNase D, processes tRNA precursorchromosome CDS2563897 1128 - 0.541667
rne Z1722 RNase E, membrane attachment, mRNA turnover, maturation 5S RNAchromosome CDS1585374 3186 - 0.55838
rnpA Z5195 RNase P, protein component; protein C5; processes tRNA, 4.5S RNAchromosome CDS4739709 360 + 0.555556
rph Z5068 RNase PHchromosome CDS4628676 717 - 0.570432
rplA Z5557 50S ribosomal subunit protein L1, regulates synthesis of L1 and L11chromosome CDS5056642 705 + 0.51773
rplB Z4688 50S ribosomal subunit protein L2chromosome CDS4252777 822 - 0.53163
rplC Z4691 50S ribosomal subunit protein L3chromosome CDS4254531 630 - 0.512698
rplD Z4690 50S ribosomal subunit protein L4, regulates expression of S10 operonchromosome CDS4253915 606 - 0.529703
rplE Z4678 50S ribosomal subunit protein L5chromosome CDS4249133 540 - 0.498148
rplF Z4675 50S ribosomal subunit protein L6chromosome CDS4247841 534 - 0.520599
rplI Z5812 50S ribosomal subunit protein L9chromosome CDS5309820 450 + 0.495556
rplJ Z5558 50S ribosomal subunit protein L10chromosome CDS5057638 498 + 0.524096
rplK Z5556 50S ribosomal subunit protein L11chromosome CDS5056210 429 + 0.519814
rplL Z5559 50S ribosomal subunit protein L7/L12chromosome CDS5058202 366 + 0.461749
rplM Z4589 50S ribosomal subunit protein L13chromosome CDS4180676 429 - 0.505827
rplN Z4680 50S ribosomal subunit protein L14chromosome CDS4250012 372 - 0.510753
rplO Z4671 50S ribosomal subunit protein L15chromosome CDS4246339 435 - 0.537931
rplP Z4684 50S ribosomal subunit protein L16chromosome CDS4250993 411 - 0.515815
rplQ Z4664 50S ribosomal subunit protein L17chromosome CDS4241850 384 - 0.536458
rplR Z4674 50S ribosomal subunit protein L18chromosome CDS4247478 354 - 0.536723
rplS Z3900 50S ribosomal subunit protein L19chromosome CDS3534152 348 - 0.482759
rplT Z2745 50S ribosomal subunit protein L20, and regulatorchromosome CDS2474308 357 - 0.484594
rplU Z4549 50S ribosomal subunit protein L21chromosome CDS4142708 312 - 0.483974
rplV Z4686 50S ribosomal subunit protein L22chromosome CDS4252135 333 - 0.498498
rplW Z4689 50S ribosomal subunit protein L23chromosome CDS4253616 303 - 0.481848
rplX Z4679 50S ribosomal subunit protein L24chromosome CDS4249687 315 - 0.463492
rplY Z3444 50S ribosomal subunit protein L25chromosome CDS3088716 285 + 0.498246
rpmA Z4547 50S ribosomal subunit protein L27chromosome CDS4142430 258 - 0.5
rpmB Z5061 50S ribosomal subunit protein L28chromosome CDS4624280 237 - 0.531646
rpmC Z4683 50S ribosomal subunit protein L29chromosome CDS4250802 192 - 0.541667
rpmD Z4672 50S ribosomal subunit protein L30chromosome CDS4246777 180 - 0.5
rpmE Z5484 50S ribosomal subunit protein L31chromosome CDS4997269 213 + 0.492958
rpmF Z1728 50S ribosomal subunit protein L32chromosome CDS1591548 174 + 0.54023
rpmG Z5060 50S ribosomal subunit protein L33chromosome CDS4624092 168 - 0.404762
rpmH Z5194 50S ribosomal subunit protein L34chromosome CDS4739552 141 + 0.51773
rpmI Z2746 50S ribosomal subunit protein Achromosome CDS2474717 198 - 0.5
rpmJ Z4669 50S ribosomal subunit protein L36chromosome CDS4244852 117 - 0.478632
rpsA Z1257 30S ribosomal subunit protein S1chromosome CDS1180861 1674 + 0.511947
rpsB Z0180 30S ribosomal subunit protein S2chromosome CDS193361 726 + 0.512397
rpsC Z4685 30S ribosomal subunit protein S3chromosome CDS4251416 702 - 0.508547
rpsD Z4666 30S ribosomal subunit protein S4chromosome CDS4243289 621 - 0.507246
rpsE Z4673 30S ribosomal subunit protein S5chromosome CDS4246960 504 - 0.498016
rpsF Z5809 30S ribosomal subunit protein S6chromosome CDS5308830 396 + 0.527778
rpsG Z4699 30S ribosomal subunit protein S7, initiates assemblychromosome CDS4260739 471 - 0.496815
rpsH Z4676 30S ribosomal subunit protein S8, and regulatorchromosome CDS4248387 393 - 0.501272
rpsI Z4588 30S ribosomal subunit protein S9chromosome CDS4180268 393 - 0.519084
rpsJ Z4692 30S ribosomal subunit protein S10chromosome CDS4255193 312 - 0.554487
rpsK Z4667 30S ribosomal subunit protein S11chromosome CDS4243943 390 - 0.517949
rpsL Z4700 30S ribosomal subunit protein S12chromosome CDS4261306 375 - 0.533333
rpsM Z4668 30S ribosomal subunit protein S13chromosome CDS4244349 357 - 0.518207
rpsN Z4677 30S ribosomal subunit protein S14chromosome CDS4248813 306 - 0.526144
rpsO Z4526 30S ribosomal subunit protein S15chromosome CDS4121128 270 - 0.522222
rpsP Z3903 30S ribosomal subunit protein S16chromosome CDS3535906 249 - 0.514056
rpsQ Z4681 30S ribosomal subunit protein S17chromosome CDS4250548 255 - 0.47451
rpsR Z5811 30S ribosomal subunit protein S18chromosome CDS5309551 228 + 0.530702
rpsS Z4687 30S ribosomal subunit protein S19chromosome CDS4252482 279 - 0.491039
rpsT Z0027 30S ribosomal subunit protein S20chromosome CDS25221 264 - 0.465909
rpsU Z4418 30S ribosomal subunit protein S21chromosome CDS4017627 216 + 0.518519
rsuA Z3442 16S pseudouridylate 516 synthasechromosome CDS3085987 696 - 0.530172
selB Z5011 selenocysteinyl-tRNA-specific translation factorchromosome CDS4567946 1845 - 0.56206
serS Z1239 serine tRNA synthetase; also charges selenocystein tRNA with serinechromosome CDS1159763 1293 + 0.527456
sfhB Z3888 suppressor of ftsH mutationchromosome CDS3524999 981 - 0.523955
smpA Z3910 small membrane protein Achromosome CDS3543652 153 + 0.464052
speG Z2571 spermidine N1-acetyltransferasechromosome CDS2331272 561 + 0.467023
spoU Z5077 putative RNA methylasechromosome CDS4637360 690 + 0.553623
srmB Z3859 ATP-dependent RNA helicasechromosome CDS3503108 1335 + 0.546067
sun Z4659 orf, hypothetical proteinchromosome CDS4237441 1290 + 0.49845
tgt Z0505 tRNA-guanine transglycosylasechromosome CDS489768 1128 + 0.514184
thrS Z2748 threonine tRNA synthetasechromosome CDS2475557 1929 - 0.499741
trmA Z5526 tRNA (uracil-5-)-methyltransferasechromosome CDS5040201 1101 - 0.511353
trmD Z3901 tRNA methyltransferase; tRNA (guanine-7-)-methyltransferasechromosome CDS3534541 768 - 0.53125
trpS Z4737 tryptophan tRNA synthetasechromosome CDS4292052 1005 - 0.526368
truA Z3580 pseudouridylate synthase Ichromosome CDS3231133 813 - 0.557196
truB Z4527 tRNA pseudouridine 5S synthasechromosome CDS4121546 945 - 0.529101
tsf Z0181 protein chain elongation factor EF-Tschromosome CDS194344 852 + 0.497653
tufA Z4697 protein chain elongation factor EF-Tu (duplicate of tufB)chromosome CDS4257273 1185 - 0.531646
tufB Z5553 protein chain elongation factor EF-Tu (duplicate of tufA)chromosome CDS5053707 1185 + 0.527426
tyrS Z2650 tyrosine tRNA synthetasechromosome CDS2390867 1287 - 0.516706
valS Z5870 valine tRNA synthetasechromosome CDS5366382 2856 - 0.551471
yabO Z0066 orf, hypothetical proteinchromosome CDS64620 660 - 0.540909
yadB Z0155 putative tRNA synthetasechromosome CDS163509 927 - 0.538296
yadP Z0158 orf, hypothetical proteinchromosome CDS165824 540 - 0.559259
yaeJ Z0203 orf, hypothetical proteinchromosome CDS218178 411 + 0.545012
ybjF Z1086 putative enzymechromosome CDS1025464 1128 + 0.548759
yceC Z1725 orf, hypothetical proteinchromosome CDS1589132 960 + 0.51875
ycfB Z1862 orf, hypothetical proteinchromosome CDS1698365 1152 - 0.53125
ychF Z1974 putative GTP-binding proteinchromosome CDS1794009 1092 - 0.508242
yciH Z2524 orf, hypothetical proteinchromosome CDS2243485 330 - 0.487879
yciL Z2541 orf, hypothetical proteinchromosome CDS2258742 873 - 0.54181
yciO Z2543 orf, hypothetical proteinchromosome CDS2261438 657 - 0.493151
yeiP Z3430 putative elongation factorchromosome CDS3071392 828 + 0.506039
yfcB Z3593 putative adenine-specific methylasechromosome CDS3243827 1266 - 0.514218
yfhC Z3839 putative deaminasechromosome CDS3487575 537 - 0.528864
yfiA Z3890 putative yhbH sigma 54 modulatorchromosome CDS3527122 342 + 0.461988
yfiF Z3865 orf, hypothetical proteinchromosome CDS3507527 1038 - 0.561657
yfjA Z3902 orf, hypothetical proteinchromosome CDS3535339 558 - 0.491039
ygcA Z4100 putative enzymechromosome CDS3703396 1302 - 0.513825
ygjO Z4437 putative enzymechromosome CDS4041585 1137 - 0.541777
yhaR Z4465 orf, hypothetical proteinchromosome CDS4066566 453 - 0.520971
yhbH Z4566 probable sigma-54 modulation proteinchromosome CDS4155742 288 + 0.447917
yhbY Z4542 orf, hypothetical proteinchromosome CDS4137504 294 + 0.486395
yhdG Z4620 putative dehydrogenasechromosome CDS4212458 966 + 0.522774
yibK Z5033 orf, hypothetical proteinchromosome CDS4597029 474 + 0.546413
yihZ Z5426 orf, hypothetical proteinchromosome CDS4942350 438 + 0.547945
yjbC Z5620 orf, hypothetical proteinchromosome CDS5113732 873 + 0.521191
yjbN Z5647 orf, hypothetical proteinchromosome CDS5144808 1038 + 0.532755
yjeA Z5763 putative lysyl-tRNA synthetasechromosome CDS5266878 1008 + 0.517857
yjeJ Z5750 orf, hypothetical proteinchromosome CDS5257791 870 - 0.449425
yjfH Z5787 orf, hypothetical proteinchromosome CDS5292988 732 + 0.561475
yjgF Z5854 orf, hypothetical proteinchromosome CDS5356050 426 - 0.50939
yjgH Z5860 orf, hypothetical proteinchromosome CDS5358337 396 - 0.472222
yjgL Z5865 chromosome CDS5360960 1791 + 0.314908
yjjT Z5972 putative enzymechromosome CDS5494709 1032 - 0.556202
ykgM Z0364 putative ribosomal proteinchromosome CDS344923 264 - 0.462121
yleA Z0810 orf, hypothetical proteinchromosome CDS773473 1425 - 0.539649
yliG Z1061 orf, hypothetical proteinchromosome CDS1003656 1326 - 0.526395
ymfC Z1864 orf, hypothetical proteinchromosome CDS1699996 624 - 0.517628
yohI Z3389 putative regulator proteinchromosome CDS3029633 951 - 0.537329
yrdC Z4653 orf, hypothetical proteinchromosome CDS4233077 573 - 0.52356
yrfH Z4754 orf, hypothetical proteinchromosome CDS4308764 402 + 0.532338