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2024-04-28 22:45:20

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Colwellia psychrerythraea 34H, 34H; BAA-681

Number of genes found: 202

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Colwellia psychrerythraea 34H, 34H; BAA-681
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA CPS_2046 endoribonuclease, L-PSP familychromosome CDS2120101 411 - 0.372263
NA CPS_3826 SmpA/OmlA family proteinchromosome CDS3994220 435 + 0.363218
NA CPS_3689 putative translation initation factor SUI1chromosome CDS3835484 318 + 0.418239
NA CPS_4400 peptidyl-tRNA hydrolase domain proteinchromosome CDS4635763 414 - 0.410628
NA CPS_3560 GTP-binding protein YchFchromosome CDS3697939 1092 + 0.3837
NA CPS_1125 ATP-dependent RNA helicase, DEAD box familychromosome CDS1147766 1401 + 0.401856
NA CPS_3114 acetyltransferase, GNAT familychromosome CDS3257254 507 + 0.337278
NA CPS_4763 conserved hypothetical protein TIGR00462chromosome CDS5040856 978 - 0.379346
NA CPS_3401 ATP-dependent RNA helicase, DEAD box familychromosome CDS3528626 1299 - 0.425712
NA CPS_3558 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5chromosome CDS3696640 636 + 0.419811
NA CPS_0042 ATP-dependent RNA helicase, DEAD box familychromosome CDS42397 1263 + 0.372922
NA CPS_1178 conserved hypothetical proteinchromosome CDS1202840 1731 - 0.402657
NA CPS_0550 NifR3/Smm1 family proteinchromosome CDS547968 1017 + 0.422812
NA CPS_3669 cytidine/deoxycytidylate deaminase zinc-binding domain proteinchromosome CDS3812220 549 + 0.420765
NA CPS_2042 acetyltransferase, GNAT familychromosome CDS2116267 597 + 0.351759
NA CPS_4427 hypothetical proteinchromosome CDS4667268 660 + 0.345455
NA CPS_3151 modification methylase, HemK familychromosome CDS3280026 945 - 0.387302
NA CPS_4080 pseudouridine synthase Rlu family protein, TIGR01621chromosome CDS4292838 693 + 0.365079
NA CPS_1154 RNA pseudouridine synthase family proteinchromosome CDS1176031 630 - 0.425397
NA CPS_4616 RNA methyltransferase, TrmH family, group 3chromosome CDS4873948 756 - 0.40873
NA CPS_2623 metallo-beta-lactamase family proteinchromosome CDS2726810 1356 + 0.384956
NA CPS_3551 modification methylase, HemK familychromosome CDS3689945 858 - 0.413753
NA CPS_1658 putative tRNA-(MS[2]IO[6]A)-hydroxylasechromosome CDS1708697 573 + 0.39267
NA CPS_4413 putative ribosomal small subunit pseudouridine synthase Achromosome CDS4650482 723 - 0.383126
NA CPS_0548 acetyltransferase, GNAT familychromosome CDS545636 561 - 0.342246
NA CPS_0919 hypothetical proteinchromosome CDS922838 546 - 0.395604
NA CPS_3498 endoribonuclease, L-PSP familychromosome CDS3634617 465 + 0.391398
NA CPS_3454 conserved hypothetical protein TIGR00253chromosome CDS3589633 297 + 0.3367
NA CPS_1418 ATP-dependent RNA helicase, DEAD box familychromosome CDS1457739 1206 + 0.397181
NA CPS_0027 putative RNA-binding proteinchromosome CDS30897 552 + 0.387681
NA CPS_2752 acetyltransferase, GNAT familychromosome CDS2866203 528 - 0.357955
NA CPS_0916 RNA pseudouridine synthase family proteinchromosome CDS918971 945 + 0.382011
NA CPS_4240 endoribonuclease, L-PSP familychromosome CDS4467378 348 - 0.396552
NA CPS_4974 putative endoribonuclease L-PSPchromosome CDS5284996 390 + 0.379487
NA CPS_1637 acetyltransferase, GNAT familychromosome CDS1688925 561 + 0.338681
NA CPS_4113 RNA methyltransferase, TrmH familychromosome CDS4326729 585 - 0.384615
NA CPS_1129 RNA methyltransferase, TrmH family, group 1chromosome CDS1151668 822 + 0.386861
NA CPS_1649 hypothetical proteinchromosome CDS1696158 825 + 0.328485
NA CPS_3936 acetyltransferase, GNAT familychromosome CDS4120443 624 + 0.379808
NA CPS_3144 hypothetical proteinchromosome CDS3274738 504 + 0.337302
NA CPS_4001 conserved domain proteinchromosome CDS4198906 900 + 0.365556
NA CPS_2096 conserved hypothetical proteinchromosome CDS2180556 660 + 0.351515
NA CPS_0906 NifR3/Smm1 family proteinchromosome CDS905786 933 + 0.407288
NA CPS_4063 endoribonuclease, L-PSP family, truncatedchromosome CDS4275324 198 - 0.338384
NA CPS_2658 ATP-dependent RNA helicase, DEAD box familychromosome CDS2770110 1200 + 0.376667
NA CPS_1787 MiaB-like tRNA modifying enzyme YliG, TIGR01125chromosome CDS1830310 1365 + 0.396337
NA CPS_0784 RNA methyltransferase, TrmH familychromosome CDS804081 543 - 0.373849
NA CPS_1829 conserved hypothetical proteinchromosome CDS1879763 762 + 0.391076
NA CPS_4386 RNA methyltransferase, TrmH family, group 2chromosome CDS4622460 465 + 0.410753
NA CPS_3520 Sua5/YciO/YrdC/YwlC family proteinchromosome CDS3659128 621 - 0.386473
NA CPS_2464 acetyltransferase, GNAT familychromosome CDS2582100 492 + 0.341463
NA CPS_2942 hypothetical proteinchromosome CDS3079115 795 - 0.318239
NA CPS_1590 ATP-dependent RNA helicase, DEAD box familychromosome CDS1635005 1368 + 0.383772
NA CPS_3215 putative ATP-dependent RNA helicase SrmBchromosome CDS3347779 1347 - 0.370453
NA CPS_3858 endoribonuclease, L-PSP familychromosome CDS4026225 378 - 0.417989
NA CPS_0711 ribosomal RNA small subunit methyltransferase Dchromosome CDS713487 1179 - 0.372349
NA CPS_4307 tRNA synthetases class I family proteinchromosome CDS4535665 948 + 0.411392
NA CPS_2935 hypothetical proteinchromosome CDS3067410 1413 + 0.34678
NA CPS_0353 TIM-barrel protein, yjbN familychromosome CDS363280 1008 - 0.396825
NA CPS_0951 hypothetical proteinchromosome CDS957226 1293 + 0.358082
NA CPS_0544 conserved hypothetical proteinchromosome CDS542440 606 - 0.386139
NA CPS_0536 RNA pseudouridine synthase family proteinchromosome CDS534162 1704 - 0.38439
NA CPS_3679 RNA pseudouridine synthase family proteinchromosome CDS3823993 957 + 0.39185
alaS CPS_1042 alanyl-tRNA synthetasechromosome CDS1068783 2631 + 0.403649
ansA CPS_2584 L-asparaginase Ichromosome CDS2687126 1014 - 0.403353
argS CPS_1110 arginyl-tRNA synthetasechromosome CDS1133766 1749 - 0.393939
asnS CPS_2591 asparaginyl-tRNA synthetasechromosome CDS2693676 1401 - 0.399001
aspS CPS_2114 aspartyl-tRNA synthetasechromosome CDS2202254 1806 + 0.395349
cafA CPS_4556 ribonuclease Gchromosome CDS4809160 1458 - 0.379973
cca CPS_4215 tRNA nucleotidyltransferasechromosome CDS4437501 1338 + 0.411061
cysS CPS_3792 cysteinyl-tRNA synthetasechromosome CDS3954815 1410 - 0.399291
dbpA CPS_1540 ATP-dependent RNA helicase DbpAchromosome CDS1582295 1407 + 0.398721
deaD CPS_1726 RNA helicase DeaDchromosome CDS1775322 1836 + 0.406318
def1 CPS_0020 polypeptide deformylasechromosome CDS24812 516 - 0.383721
def2 CPS_0407 polypeptide deformylasechromosome CDS414157 501 + 0.369261
dtd CPS_0610 D-tyrosyl-tRNA(Tyr) deacylasechromosome CDS614991 438 + 0.394977
efp CPS_0972 translation elongation factor Pchromosome CDS977194 576 + 0.399306
fmt CPS_0019 methionyl-tRNA formyltransferasechromosome CDS23796 984 - 0.403455
frr CPS_1556 ribosome recycling factorchromosome CDS1600061 558 + 0.362007
fusA1 CPS_0875 translation elongation factor Gchromosome CDS884821 2106 + 0.407882
fusA2 CPS_4765 translation elongation factor Gchromosome CDS5043431 2100 - 0.421429
glnS CPS_3240 glutaminyl-tRNA synthetasechromosome CDS3369541 1671 - 0.388989
gltX CPS_3216 glutamyl-tRNA synthetasechromosome CDS3349180 1413 - 0.395612
glyQ CPS_0005 glycyl-tRNA synthetase, alpha subunitchromosome CDS6388 936 + 0.384615
glyS CPS_0006 glycyl-tRNA synthetase, beta subunitchromosome CDS7323 2067 + 0.379777
gshB CPS_1253 glutathione synthetasechromosome CDS1283691 963 - 0.389408
hisS CPS_4251 histidyl-tRNA synthetasechromosome CDS4479301 1281 - 0.401249
hslR CPS_4593 heat shock protein 15chromosome CDS4848022 405 + 0.375309
ileS CPS_1182 isoleucyl-tRNA synthetasechromosome CDS1208450 2862 + 0.404612
infA CPS_2765 translation initiation factor IF-1chromosome CDS2879866 219 + 0.360731
infB CPS_2203 translation initiation factor IF-2chromosome CDS2300794 2670 + 0.406367
infC CPS_2908 translation initiation factor IF-3chromosome CDS3041500 558 - 0.422939
ksgA CPS_4526 dimethyladenosine transferasechromosome CDS4779422 906 + 0.383002
leuS CPS_1722 leucyl-tRNA synthetasechromosome CDS1768334 2592 - 0.411265
lysS CPS_4082 lysyl-tRNA synthetasechromosome CDS4295466 1575 - 0.384762
map CPS_1550 methionine aminopeptidase, type Ichromosome CDS1594652 789 - 0.380228
miaA CPS_0324 tRNA delta(2)-isopentenylpyrophosphate transferasechromosome CDS335368 951 + 0.429022
miaB CPS_3572 tRNA-i(6)A37 thiotransferase enzyme MiaBchromosome CDS3709073 1443 + 0.394317
miaE CPS_3795 tRNA-(MS[2]IO[6]A)-hydroxylasechromosome CDS3957742 777 - 0.371943
pcnB CPS_4310 polyA polymerasechromosome CDS4537869 1425 + 0.399298
pheS CPS_2996 phenylalanyl-tRNA synthetase, alpha subunitchromosome CDS3141001 996 - 0.391566
pnp CPS_2207 polyribonucleotide nucleotidyltransferasechromosome CDS2305949 2118 + 0.399906
prfA CPS_3552 peptide chain release factor 1chromosome CDS3690838 1089 - 0.411387
prfB CPS_4083 peptide chain release factor 2, programmed frameshiftchromosome CDS4297120 1099 - 0.411283
prfC CPS_1111 peptide chain release factor 3chromosome CDS1135852 1581 - 0.398482
prmA CPS_0540 ribosomal protein L11 methyltransferasechromosome CDS538174 882 + 0.426304
proS CPS_3230 prolyl-tRNA synthetasechromosome CDS3358621 1710 + 0.393567
pth CPS_3559 peptidyl-tRNA hydrolasechromosome CDS3697306 585 + 0.423932
queA CPS_1119 S-adenosylmethionine:tRNAribosyltransferase-isom erasechromosome CDS1141665 1080 + 0.406481
rbfA CPS_2204 ribosome-binding factor Achromosome CDS2303666 429 + 0.391608
rhlB CPS_0174 ATP-dependent RNA helicase RhlBchromosome CDS182390 1287 - 0.393162
rimM CPS_4068 16S rRNA processing protein RimMchromosome CDS4277437 531 - 0.374765
rluA CPS_4520 ribosomal large subunit pseudouridine synthase Achromosome CDS4771656 684 + 0.394737
rluB CPS_3519 ribosomal large subunit pseudouridine synthase Bchromosome CDS3657686 1068 - 0.42603
rluC CPS_2290 ribosomal large subunit pseudouridine synthase Cchromosome CDS2390779 1083 + 0.385965
rluD CPS_3915 ribosomal large subunit pseudouridine synthase Dchromosome CDS4089983 975 - 0.410256
rluE CPS_2898 ribosomal large subunit pseudouridine synthase Echromosome CDS3032968 606 + 0.394389
rmf1 CPS_3275 ribosome modulation factorchromosome CDS3403877 174 - 0.454023
rmf2 CPS_4822 ribosome modulation factorchromosome CDS5115161 174 + 0.408046
rnd CPS_3518 ribonuclease Dchromosome CDS3656526 1140 - 0.362281
rne CPS_2289 ribonuclease Echromosome CDS2387073 3015 - 0.394693
rnpA CPS_5052 ribonuclease P protein componentchromosome CDS5372245 387 - 0.361757
rph CPS_0112 ribonuclease PHchromosome CDS119037 714 + 0.418768
rplA CPS_4772 ribosomal protein L1chromosome CDS5057189 699 - 0.41917
rplB CPS_0870 ribosomal protein L2chromosome CDS881119 825 - 0.452121
rplC CPS_0873 ribosomal protein L3chromosome CDS882877 639 - 0.42723
rplD CPS_0872 ribosomal protein L4chromosome CDS882255 606 - 0.422442
rplE CPS_0613 ribosomal protein L5chromosome CDS616397 546 + 0.410256
rplF CPS_0616 ribosomal protein L6chromosome CDS617672 534 + 0.400749
rplI CPS_0418 ribosomal protein L9chromosome CDS423682 453 + 0.406181
rplJ CPS_4771 ribosomal protein L10chromosome CDS5056329 495 - 0.424242
rplK CPS_4773 ribosomal protein L11chromosome CDS5057891 429 - 0.426573
rplL CPS_4770 ribosomal protein L7/L12chromosome CDS5055848 360 - 0.408333
rplM CPS_4443 ribosomal protein L13chromosome CDS4680277 429 - 0.400932
rplN CPS_0611 ribosomal protein L14chromosome CDS615689 369 + 0.430894
rplO CPS_0620 ribosomal protein L15chromosome CDS619276 435 + 0.413793
rplP CPS_0866 ribosomal protein L16chromosome CDS879285 414 - 0.434783
rplQ CPS_0627 ribosomal protein L17chromosome CDS623821 405 + 0.432099
rplR CPS_0617 ribosomal protein L18chromosome CDS618215 354 + 0.446328
rplS CPS_4066 ribosomal protein L19chromosome CDS4276247 354 - 0.40678
rplT CPS_2906 ribosomal protein L20chromosome CDS3040719 360 - 0.416667
rplU CPS_4512 ribosomal protein L21chromosome CDS4759793 312 - 0.426282
rplV CPS_0868 ribosomal protein L22chromosome CDS880418 333 - 0.408408
rplW CPS_0871 ribosomal protein L23chromosome CDS881956 303 - 0.39604
rplX CPS_0612 ribosomal protein L24chromosome CDS616070 315 + 0.374603
rpmA CPS_4511 ribosomal protein L27chromosome CDS4759520 258 - 0.418605
rpmB CPS_0209 ribosomal protein L28chromosome CDS218319 237 + 0.396624
rpmC CPS_0865 ribosomal protein L29chromosome CDS879094 192 - 0.385417
rpmD CPS_0619 ribosomal protein L30chromosome CDS619088 186 + 0.365591
rpmE CPS_4365 ribosomal protein L31chromosome CDS4597037 213 - 0.375587
rpmF CPS_2294 ribosomal protein L32chromosome CDS2394232 171 + 0.432749
rpmG CPS_0210 ribosomal protein L33chromosome CDS218580 156 + 0.307692
rpmH CPS_5053 ribosomal protein L34chromosome CDS5372675 135 - 0.481481
rpmI CPS_2907 ribosomal protein L35chromosome CDS3041095 306 - 0.362745
rpmJ CPS_0622 ribosomal protein L36chromosome CDS621085 114 + 0.368421
rpsA CPS_2335 ribosomal protein S1chromosome CDS2433740 1662 + 0.398315
rpsB CPS_1553 ribosomal protein S2chromosome CDS1597017 729 + 0.382716
rpsC CPS_0867 ribosomal protein S3chromosome CDS879710 696 - 0.438218
rpsD CPS_0625 ribosomal protein S4chromosome CDS622142 621 + 0.405797
rpsE CPS_0618 ribosomal protein S5chromosome CDS618578 510 + 0.443137
rpsF CPS_0415 ribosomal protein S6chromosome CDS422630 432 + 0.435185
rpsG CPS_4766 ribosomal protein S7chromosome CDS5045785 471 - 0.424628
rpsH CPS_0615 ribosomal protein S8chromosome CDS617272 390 + 0.4
rpsI CPS_4442 ribosomal protein S9chromosome CDS4679881 393 - 0.414758
rpsJ CPS_0874 ribosomal protein S10chromosome CDS883530 312 - 0.416667
rpsK CPS_0624 ribosomal protein S11chromosome CDS621720 390 + 0.466667
rpsL CPS_4767 ribosomal protein S12chromosome CDS5046374 375 - 0.426667
rpsM CPS_0623 ribosomal protein S13chromosome CDS621350 357 + 0.448179
rpsN CPS_0614 ribosomal protein S14chromosome CDS616947 306 + 0.415033
rpsO CPS_2206 ribosomal protein S15chromosome CDS2305298 270 + 0.392593
rpsP CPS_4069 ribosomal protein S16chromosome CDS4277996 246 - 0.45935
rpsQ CPS_0864 ribosomal protein S17chromosome CDS878843 252 - 0.373016
rpsR CPS_0417 ribosomal protein S18chromosome CDS423437 228 + 0.377193
rpsS CPS_0869 ribosomal protein S19chromosome CDS880762 276 - 0.434783
rpsT CPS_1179 ribosomal protein S20chromosome CDS1204810 261 - 0.409962
rpsU CPS_4337 ribosomal protein S21chromosome CDS4571223 216 - 0.430556
rrmJ CPS_3453 ribosomal RNA large subunit methyltransferase Jchromosome CDS3588574 630 - 0.393651
rsmC CPS_4494 ribosomal RNA small subunit methyltransferase Cchromosome CDS4738827 1074 + 0.360335
rsuA CPS_2136 ribosomal small subunit pseudouridine synthase Achromosome CDS2233909 732 + 0.401639
rumA CPS_4116 23S rRNA (Uracil-5-)-methyltransferasechromosome CDS4330537 1410 - 0.385106
serS CPS_2755 seryl-tRNA synthetasechromosome CDS2867882 1281 - 0.398907
spoU CPS_4975 tRNA (guanosine-2'-O-)-methyltransferasechromosome CDS5285586 708 + 0.444915
srmB CPS_4097 ATP-dependent RNA helicase SrmBchromosome CDS4311925 1293 + 0.390565
sun CPS_0018 sun proteinchromosome CDS22465 1323 - 0.395314
tgt CPS_1120 queuine tRNA-ribosyltransferasechromosome CDS1142819 1158 + 0.41019
thrS CPS_2909 threonyl-tRNA synthetasechromosome CDS3042179 1911 - 0.381999
trmA CPS_0336 tRNA (uracil-5-)-methyltransferasechromosome CDS348137 1095 - 0.359817
trmD CPS_4067 tRNA (guanine-N1)-methyltransferasechromosome CDS4276636 762 - 0.434383
trmU CPS_2900 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS3034162 1128 + 0.394504
trpS CPS_0480 tryptophanyl-tRNA synthetasechromosome CDS481722 1008 + 0.401786
truA CPS_3803 tRNA pseudouridine synthase Achromosome CDS3965207 780 - 0.396154
truB CPS_2205 tRNA pseudouridine synthase Bchromosome CDS2304098 957 + 0.407524
truC CPS_3649 tRNA pseudouridine synthase Cchromosome CDS3794104 915 - 0.398907
tsf CPS_1554 translation elongation factor Tschromosome CDS1597880 849 + 0.413428
tuf1 CPS_4764 translation elongation factor Tuchromosome CDS5042153 1185 - 0.416034
tuf2 CPS_4780 translation elongation factor Tuchromosome CDS5064626 1185 - 0.416034
tyrS CPS_4727 tyrosyl-tRNA synthetasechromosome CDS5003497 1200 + 0.4025
valS CPS_0738 valyl-tRNA synthetasechromosome CDS738338 2922 - 0.397331
yeiP CPS_1465 elongation factor P-like protein YeiPchromosome CDS1508415 576 + 0.385417
yfiA1 CPS_1103 ribosomal subunit interface proteinchromosome CDS1123267 336 - 0.35119
yfiA2 CPS_1535 ribosomal subunit interface proteinchromosome CDS1576163 357 + 0.361345
yfiA3 CPS_4544 ribosomal subunit interface proteinchromosome CDS4796024 288 + 0.333333