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2024-05-05 04:34:20

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Pseudomonas fluorescens Pf-5, Pf-5

Number of genes found: 221

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Pseudomonas fluorescens Pf-5, Pf-5
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA PFL_5772 ATP-independent RNA helicase DbpAchromosome CDS6576787 1386 + 0.634921
NA PFL_5271 tRNA synthetase domain proteinchromosome CDS6035224 897 + 0.657748
NA PFL_0281 heat shock protein 15chromosome CDS327513 462 + 0.623377
NA PFL_2128 acetyltransferase, putativechromosome CDS2351908 552 - 0.594203
NA PFL_4223 RNA pseudouridine synthase family proteinchromosome CDS4912493 891 - 0.624018
NA PFL_5007 hypothetical proteinchromosome CDS5767714 519 + 0.628131
NA PFL_3680 amidase family proteinchromosome CDS4256541 1413 + 0.689314
NA PFL_4968 RNA methyltransferase, TrmH family, group 1chromosome CDS5720224 774 - 0.618863
NA PFL_6037 endoribonuclease L-PSP family proteinchromosome CDS6859598 354 - 0.610169
NA PFL_0025 Sua5/YciO/YrdC/YwlC family proteinchromosome CDS26911 558 + 0.641577
NA PFL_2299 tRNA synthetase class II family proteinchromosome CDS2562092 450 + 0.688889
NA PFL_1393 hypothetical proteinchromosome CDS1574129 747 + 0.631861
NA PFL_1502 RNA methyltransferase, putativechromosome CDS1687160 468 - 0.621795
NA PFL_5178 amidase family proteinchromosome CDS5939074 1464 + 0.664617
NA PFL_5361 nucleotide methyltransferase, putativechromosome CDS6131220 1125 + 0.686222
NA PFL_4787 transcriptional regulator, putativechromosome CDS5527351 375 + 0.552
NA PFL_6151 acetyltransferase, GNAT familychromosome CDS6985227 672 + 0.638393
NA PFL_2037 acetyltransferase, GNAT familychromosome CDS2264204 648 - 0.645062
NA PFL_1095 16S rRNA processing protein RimMchromosome CDS1250073 537 + 0.560521
NA PFL_3526 Endoribonuclease L-PSP superfamilychromosome CDS4065034 411 - 0.654501
NA PFL_1385 endoribonuclease L-PSP family proteinchromosome CDS1564719 498 + 0.678715
NA PFL_3896 type II and III secretion system family proteinchromosome CDS4495966 858 + 0.621212
NA PFL_5748 conserved hypothetical proteinchromosome CDS6550340 255 + 0.564706
NA PFL_4315 initiation factor 2 subunit familychromosome CDS5018206 1077 - 0.630455
NA PFL_4351 modification methylase, HemK familychromosome CDS5058756 909 - 0.630363
NA PFL_3322 ribonuclease T2 family protein, putativechromosome CDS3835691 657 - 0.640791
NA PFL_2671 hypothetical proteinchromosome CDS2950925 294 + 0.62585
NA PFL_6064 endoribonuclease L-PSP, putativechromosome CDS6885451 381 + 0.580052
NA PFL_3536 amidase family proteinchromosome CDS4077152 1440 + 0.671528
NA PFL_1310 translation initiation inhibitorchromosome CDS1483833 471 - 0.66242
NA PFL_0834 conserved hypothetical proteinchromosome CDS964361 309 - 0.521036
NA PFL_5745 cytidine/deoxycytidylate deaminase family proteinchromosome CDS6547242 510 - 0.682353
NA PFL_5211 acetyltransferase, GNAT family, putativechromosome CDS5967675 528 + 0.655303
NA PFL_0222 guanine deaminase, putativechromosome CDS259823 462 - 0.670996
NA PFL_1361 amidase family proteinchromosome CDS1538955 1359 + 0.703458
NA PFL_1693 YER057c/YjgF/UK114 family protein, putativechromosome CDS1894111 450 + 0.666667
NA PFL_0678 translation initiation factor SUI1chromosome CDS790535 441 + 0.637188
NA PFL_0981 ribosomal subunit interface protein, putativechromosome CDS1122548 360 + 0.625
NA PFL_0375 RNA methyltransferase, TrmH family, group 2chromosome CDS426682 456 - 0.644737
NA PFL_3101 ribosomal protein S6 modification protein-related proteinchromosome CDS3571100 1587 - 0.593573
NA PFL_1247 MiaB-like tRNA modifying enzyme YliG, TIGR01125chromosome CDS1416287 1338 - 0.621824
NA PFL_0804 endoribonuclease, putativechromosome CDS930194 378 - 0.645503
NA PFL_0844 translation initiation factor IF-2chromosome CDS973367 2517 + 0.609456
NA PFL_5402 acetyltransferase, GNAT familychromosome CDS6171398 570 - 0.635088
NA PFL_0807 acetyltransferase, GNAT familychromosome CDS933430 549 - 0.520947
NA PFL_5644 nucleotidyltransferase family proteinchromosome CDS6428466 675 - 0.644444
NA PFL_1235 conserved hypothetical proteinchromosome CDS1407171 426 - 0.584507
NA PFL_1857 conserved hypothetical proteinchromosome CDS2062076 987 - 0.628166
NA PFL_4928 cytidine/deoxycytidylate deaminase family proteinchromosome CDS5678227 489 - 0.672802
NA PFL_1418 acetyltransferase, GNAT family, putativechromosome CDS1599867 576 + 0.637153
NA PFL_2384 acetyltransferase, GNAT family, putativechromosome CDS2653780 576 + 0.666667
NA PFL_1598 Sua5/YciO/YrdC/YwlC family proteinchromosome CDS1794199 654 + 0.64526
NA PFL_1549 ATP-dependent RNA helicase SrmBchromosome CDS1737861 1422 + 0.622363
NA PFL_5801 ATP-dependent RNA helicase, DEAD box familychromosome CDS6608600 1869 + 0.669877
NA PFL_4251 ATP-dependent RNA helicase, DEAD box familychromosome CDS4947304 1674 - 0.62724
NA PFL_2434 acetyltransferase, GNAT familychromosome CDS2698940 528 - 0.655303
NA PFL_5373 tRNA (uracil-5-)-methyltransferasechromosome CDS6140901 1080 + 0.641667
NA PFL_0578 RNA methyltransferase, TrmH family, group 3chromosome CDS673976 765 + 0.657516
NA PFL_3583 endoribonuclease L-PSP family proteinchromosome CDS4133822 390 - 0.628205
NA PFL_0783 pesticin domain proteinchromosome CDS909901 558 + 0.621864
NA PFL_3320 acetyltransferase, GNAT familychromosome CDS3833845 540 + 0.696296
NA PFL_0278 ribosomal protein S6 modification protein PA5197chromosome CDS325274 906 - 0.636865
NA PFL_5407 ATP-dependent RNA helicase, DEAD box familychromosome CDS6176104 1335 - 0.650187
NA PFL_5122 ribosomal RNA small subunit methyltransferase Cchromosome CDS5887211 999 + 0.666667
NA PFL_1346 amidase family proteinchromosome CDS1522407 1464 + 0.67418
NA PFL_1606 peptidyl-tRNA hydrolase domain proteinchromosome CDS1802227 462 + 0.636364
NA PFL_2961 endoribonuclease L-PSP family proteinchromosome CDS3318088 444 - 0.632883
NA PFL_2655 amidase family proteinchromosome CDS2934523 1464 - 0.700137
NA PFL_1046 ATP-dependent RNA helicase RhlBchromosome CDS1196723 1491 - 0.65057
NA PFL_2910 conserved hypothetical proteinchromosome CDS3254192 588 - 0.671769
NA PFL_5807 endoribonuclease L-PSP family proteinchromosome CDS6615541 351 - 0.663818
NA PFL_5214 Putative translation initiation inhibitorchromosome CDS5971176 684 + 0.611111
NA PFL_3802 flagellar protein G (flaG)chromosome CDS4401778 471 + 0.579618
NA PFL_1975 TIM-barrel protein, yjbN familychromosome CDS2205949 1011 - 0.612265
NA PFL_4727 modification methylase, HemK familychromosome CDS5464698 981 - 0.658512
NA PFL_0796 endoribonuclease L-PSP family proteinchromosome CDS921019 384 - 0.645833
NA PFL_4689 conserved hypothetical proteinchromosome CDS5416895 1440 + 0.573611
NA PFL_4688 conserved hypothetical proteinchromosome CDS5415949 255 + 0.52549
NA PFL_5166 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5chromosome CDS5925525 600 + 0.563333
NA PFL_3941 conserved hypothetical proteinchromosome CDS4554933 405 + 0.558025
NA PFL_3008 conserved hypothetical proteinchromosome CDS3459381 1146 + 0.658813
NA PFL_3681 amidase family proteinchromosome CDS4258443 1395 + 0.673118
alaS PFL_4506 alanyl-tRNA synthetasechromosome CDS5215619 2625 - 0.613333
ansA PFL_6140 L-asparaginase Ichromosome CDS6971967 1002 + 0.700599
ansB PFL_2099 glutaminase-asparaginasechromosome CDS2319331 1089 - 0.601469
argS PFL_0439 arginyl-tRNA synthetasechromosome CDS501953 1737 - 0.64076
arnA PFL_3045 UDP-D-glucuronate dehydrogenasechromosome CDS3511106 2007 + 0.635775
aspS PFL_4767 aspartyl-tRNA synthetasechromosome CDS5503948 1776 - 0.621622
cafA PFL_0900 ribonuclease Gchromosome CDS1043038 1458 + 0.616598
cca PFL_5656 tRNA nucleotidyltransferasechromosome CDS6443200 1230 + 0.637398
cysS PFL_3912 cysteinyl-tRNA synthetasechromosome CDS4515180 1383 - 0.619667
def PFL_0022 polypeptide deformylasechromosome CDS23992 642 - 0.593458
def PFL_4594 polypeptide deformylasechromosome CDS5303261 540 - 0.625926
dtd PFL_0412 D-tyrosyl-tRNA(Tyr) deacylasechromosome CDS475144 438 + 0.623288
dusB PFL_0668 tRNA-dihydrouridine synthase Bchromosome CDS778620 1014 - 0.619329
efp PFL_4264 translation elongation factor Pchromosome CDS4962129 573 - 0.546248
fmt PFL_0021 methionyl-tRNA formyltransferasechromosome CDS22963 960 - 0.673958
frr PFL_1179 ribosome recycling factorchromosome CDS1350661 558 + 0.569892
fusA PFL_5585 translation elongation factor Gchromosome CDS6363935 2148 - 0.5554
gatA PFL_2778 amidase family proteinchromosome CDS3082770 1833 - 0.698854
gatA PFL_0894 glutamyl-tRNA(Gln) amidotransferase, A subunitchromosome CDS1037597 1452 - 0.654959
gatB PFL_0893 glutamyl-tRNA(Gln) amidotransferase, B subunitchromosome CDS1036141 1446 - 0.625173
gatC PFL_0895 glutamyl-tRNA(Gln) amidotransferase, C subunitchromosome CDS1039065 288 - 0.583333
glnS PFL_3913 glutaminyl-tRNA synthetasechromosome CDS4516581 1701 - 0.617872
gltX PFL_2049 glutamyl-tRNA synthetasechromosome CDS2277637 1482 + 0.622807
glyQ PFL_0014 glycyl-tRNA synthetase, alpha subunitchromosome CDS16791 954 - 0.614256
glyS PFL_0013 glycyl-tRNA synthetase, beta subunitchromosome CDS14740 2055 - 0.655961
gshB PFL_5828 glutathione synthetasechromosome CDS6638362 954 + 0.654088
hemK PFL_5158 hemK proteinchromosome CDS5917552 831 - 0.693141
hisS PFL_4953 histidyl-tRNA synthetasechromosome CDS5707689 1290 - 0.621705
hoxX PFL_3670 hydrogenase matureation protein HoxXchromosome CDS4244500 1719 + 0.667248
ileS PFL_5321 isoleucyl-tRNA synthetasechromosome CDS6085854 2832 - 0.63065
infA PFL_3884 translation initiation factor IF-1chromosome CDS4482759 219 + 0.525114
infC PFL_2112 translation initiation factor IF-3chromosome CDS2332830 552 + 0.521739
kptA PFL_5848 RNA 2'-phosphotransferasechromosome CDS6654116 549 + 0.621129
ksgA PFL_5649 dimethyladenosine transferasechromosome CDS6435410 813 + 0.655597
leuS PFL_5439 leucyl-tRNA synthetasechromosome CDS6208893 2607 + 0.615267
lysS PFL_1138 lysyl-tRNA synthetasechromosome CDS1305417 1503 + 0.597472
map PFL_1175 methionine aminopeptidase, type Ichromosome CDS1346714 891 - 0.608305
map PFL_3100 methionine aminopeptidase, type Ichromosome CDS3570329 765 + 0.656209
miaA PFL_0565 tRNA delta(2)-isopentenylpyrophosphate transferasechromosome CDS658261 972 + 0.611111
miaB PFL_5432 tRNA-i(6)A37 thiotransferase enzyme MiaBchromosome CDS6201870 1329 + 0.61851
miaE PFL_2636 tRNA-(ms[2]io[6]A)-hydroxylasechromosome CDS2916762 624 + 0.637821
nifR3 PFL_2059 NifR3/Smm1 family proteinchromosome CDS2282274 1089 + 0.653811
omlA PFL_0823 outer membrane lipoprotein OmlAchromosome CDS950798 528 - 0.573864
pcnB PFL_5275 poly(A) polymerasechromosome CDS6041232 1668 + 0.602518
pheS PFL_2115 phenylalanyl-tRNA synthetase, alpha subunitchromosome CDS2334134 1017 + 0.584071
pnp PFL_0848 polyribonucleotide nucleotidyltransferasechromosome CDS977948 2112 + 0.602746
prfA PFL_5159 peptide chain release factor 1chromosome CDS5918383 1083 - 0.631579
prfB PFL_2086 peptide chain release factor 2chromosome CDS2310662 621 - 0.637681
prfB PFL_1137 peptide chain release factor 2 (RF-2), programmed frameshiftchromosome CDS1304209 1096 + 0.608577
prfC PFL_0872 peptide chain release factor 3chromosome CDS1011745 1584 + 0.628157
prmA PFL_0670 ribosomal protein L11 methyltransferasechromosome CDS781164 879 - 0.665529
proS PFL_1256 prolyl-tRNA synthetasechromosome CDS1427247 1716 - 0.61655
pth PFL_5167 peptidyl-tRNA hydrolasechromosome CDS5926251 627 + 0.598086
queA PFL_4975 S-adenosylmethionine:tRNAribosyltransferase-isom erasechromosome CDS5727234 1065 - 0.635681
rbfA PFL_0845 ribosome-binding factor Achromosome CDS976043 402 + 0.604478
rfbF PFL_5094 glucose-1-phosphate cytidylyltransferasechromosome CDS5855180 774 + 0.488372
rluA PFL_4382 ribosomal large subunit pseudouridine synthase Achromosome CDS5090348 636 + 0.632075
rluB PFL_1602 ribosomal large subunit pseudouridine synthase Bchromosome CDS1797130 1191 + 0.665827
rluC PFL_1788 ribosomal large subunit pseudouridine synthase Cchromosome CDS1992571 957 + 0.621735
rluD PFL_5306 ribosomal large subunit pseudouridine synthase Dchromosome CDS6072225 1062 - 0.631827
rluE PFL_5423 ribosomal large subunit pseudouridine synthase Echromosome CDS6191149 639 - 0.660407
rnd PFL_1495 ribonuclease Dchromosome CDS1681473 1134 + 0.659612
rne PFL_1787 ribonuclease, Rne/Rng family proteinchromosome CDS1988641 3264 - 0.638174
rph PFL_6059 ribonuclease PHchromosome CDS6880342 723 - 0.625173
rplA PFL_5592 ribosomal protein L1chromosome CDS6376972 696 - 0.571839
rplB PFL_5579 ribosomal protein L2chromosome CDS6359789 825 - 0.578182
rplC PFL_5582 ribosomal protein L3chromosome CDS6361539 636 - 0.551887
rplD PFL_5581 ribosomal protein L4/L1 familychromosome CDS6360924 603 - 0.545605
rplE PFL_5570 ribosomal protein L5chromosome CDS6356287 540 - 0.531482
rplF PFL_5567 ribosomal protein L6chromosome CDS6354821 534 - 0.561798
rplI PFL_0582 ribosomal protein L9chromosome CDS676633 447 + 0.581656
rplJ PFL_5591 ribosomal protein L10chromosome CDS6376273 501 - 0.558882
rplK PFL_5593 ribosomal protein L11chromosome CDS6377667 432 - 0.543981
rplL PFL_5590 ribosomal protein L7/L12chromosome CDS6375827 366 - 0.516393
rplM PFL_5082 ribosomal protein L13chromosome CDS5843337 429 - 0.550117
rplN PFL_5572 ribosomal protein L14chromosome CDS6357173 369 - 0.536585
rplO PFL_5563 ribosomal protein L15chromosome CDS6353339 435 - 0.570115
rplP PFL_5575 ribosomal protein L16chromosome CDS6358025 414 - 0.548309
rplQ PFL_5557 ribosomal protein L17chromosome CDS6348870 387 - 0.581395
rplR PFL_5566 ribosomal protein L18chromosome CDS6354460 351 - 0.589744
rplS PFL_1097 ribosomal protein L19chromosome CDS1251410 351 + 0.549858
rplT PFL_2114 ribosomal protein L20chromosome CDS2333667 357 + 0.526611
rplU PFL_5329 ribosomal protein L21chromosome CDS6095456 312 - 0.528846
rplV PFL_5577 ribosomal protein L22chromosome CDS6359151 336 - 0.568452
rplW PFL_5580 ribosomal protein L23chromosome CDS6360628 300 - 0.523333
rplX PFL_5571 ribosomal protein L24chromosome CDS6356847 315 - 0.526984
rpmA PFL_5328 ribosomal protein L27chromosome CDS6095163 258 - 0.550388
rpmB PFL_6049 ribosomal protein L28chromosome CDS6870815 237 - 0.535865
rpmC PFL_5574 ribosomal protein L29chromosome CDS6357834 192 - 0.53125
rpmD PFL_5564 ribosomal protein L30chromosome CDS6353777 177 - 0.508475
rpmE PFL_0441 ribosomal protein L31chromosome CDS506419 222 + 0.567568
rpmE PFL_4896 ribosomal protein L31chromosome CDS5639508 270 - 0.618519
rpmF PFL_1793 ribosomal protein L32chromosome CDS1996469 183 + 0.551913
rpmG PFL_6048 ribosomal protein L33chromosome CDS6870648 156 - 0.448718
rpmH PFL_6231 ribosomal protein L34chromosome CDS7074293 135 - 0.577778
rpmI PFL_2113 ribosomal protein L35chromosome CDS2333442 195 + 0.507692
rpmJ PFL_3806 ribosomal protein L36chromosome CDS4404770 150 - 0.573333
rpsA PFL_4308 ribosomal protein S1chromosome CDS5007077 1695 - 0.538643
rpsB PFL_1176 ribosomal protein S2chromosome CDS1347904 738 + 0.563686
rpsC PFL_5576 ribosomal protein S3chromosome CDS6358451 687 - 0.54294
rpsD PFL_5559 ribosomal protein S4chromosome CDS6350323 621 - 0.544283
rpsE PFL_5565 ribosomal protein S5chromosome CDS6353956 501 - 0.55489
rpsF PFL_0579 ribosomal protein S6chromosome CDS674991 426 + 0.551643
rpsG PFL_5586 ribosomal protein S7chromosome CDS6366113 471 - 0.558386
rpsH PFL_5568 ribosomal protein S8chromosome CDS6355367 393 - 0.541985
rpsI PFL_5081 ribosomal protein S9chromosome CDS5842930 393 - 0.559796
rpsJ PFL_5583 ribosomal protein S10chromosome CDS6362255 312 - 0.528846
rpsK PFL_5560 ribosomal protein S11chromosome CDS6350962 390 - 0.574359
rpsL PFL_5587 ribosomal protein S12chromosome CDS6366695 372 - 0.564516
rpsM PFL_5561 ribosomal protein S13p/S18echromosome CDS6351382 357 - 0.540616
rpsN PFL_5569 ribosomal protein S14p/S29echromosome CDS6355968 306 - 0.578431
rpsO PFL_0847 ribosomal protein S15chromosome CDS977481 270 + 0.540741
rpsP PFL_1094 ribosomal protein S16chromosome CDS1249816 252 + 0.571429
rpsQ PFL_5573 ribosomal protein S17chromosome CDS6357565 267 - 0.524345
rpsR PFL_0580 ribosomal protein S18chromosome CDS675445 231 + 0.562771
rpsS PFL_5578 ribosomal protein S19chromosome CDS6359497 276 - 0.518116
rpsT PFL_5324 ribosomal protein S20chromosome CDS6091563 279 + 0.519713
rpsU PFL_5661 ribosomal protein S21chromosome CDS6447251 216 + 0.541667
rrmJ PFL_0835 ribosomal RNA large subunit methyltransferase Jchromosome CDS964774 630 + 0.553968
rsuA PFL_1245 S4 domain proteinchromosome CDS1414903 711 - 0.639944
rsuA PFL_1430 ribosomal small subunit pseudouridine synthase Achromosome CDS1609814 693 - 0.640693
rumA PFL_4447 23S rRNA (uracil-5-)-methyltransferase RumAchromosome CDS5156067 1353 - 0.628234
serS PFL_3876 seryl-tRNA synthetasechromosome CDS4473766 1281 - 0.637783
sun PFL_0020 sun proteinchromosome CDS21641 1326 - 0.680995
tgt PFL_4974 queuine tRNA-ribosyltransferasechromosome CDS5726104 1134 - 0.597884
thrS PFL_6184 threonyl-tRNA synthetasechromosome CDS7020422 1890 + 0.651323
thrS PFL_2111 threonyl-tRNA synthetasechromosome CDS2330908 1923 + 0.579823
trmD PFL_1096 tRNA (guanine-N1)-methyltransferasechromosome CDS1250612 753 + 0.573705
trmU PFL_3891 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS4490981 1134 + 0.626984
trpS PFL_5087 tryptophanyl-tRNA synthetasechromosome CDS5848639 1356 - 0.629056
truA PFL_2071 tRNA pseudouridine synthase Achromosome CDS2298574 825 + 0.626667
truB PFL_0846 tRNA pseudouridine synthase Bchromosome CDS976448 918 + 0.61329
tsf PFL_1177 translation elongation factor Tschromosome CDS1348845 867 + 0.557093
tuf PFL_5597 translation elongation factor Tuchromosome CDS6379304 1194 - 0.545226
tuf PFL_5584 translation elongation factor Tuchromosome CDS6362707 1194 - 0.544389
tyrS PFL_5607 tyrosyl-tRNA synthetasechromosome CDS6388506 1200 - 0.55
valS PFL_1063 valyl-tRNA synthetasechromosome CDS1212001 2847 - 0.637162
ychF PFL_5168 GTP-binding protein YchFchromosome CDS5926901 1101 + 0.611263
yfiA PFL_0914 ribosomal subunit interface proteinchromosome CDS1058445 306 - 0.53268