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2024-04-30 04:57:02

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Pseudomonas syringae pv. syringae B728a, B728a

Number of genes found: 217

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Pseudomonas syringae pv. syringae B728a, B728a
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Psyr_2820 RecT proteinchromosome CDS3394228 888 + 0.592342
NA Psyr_5136 ribonuclease P proteinchromosome CDS6092562 372 - 0.534946
NA Psyr_4323 synthetase, putativechromosome CDS5175676 792 - 0.489899
NA Psyr_0873 GCN5-related N-acetyltransferasechromosome CDS995840 564 - 0.602837
NA Psyr_0208 YjgF-like proteinchromosome CDS222599 381 - 0.566929
NA Psyr_4534 Ribosomal protein S8chromosome CDS5396292 393 - 0.53944
NA Psyr_4546 Ribosomal L23 proteinchromosome CDS5401559 300 - 0.503333
NA Psyr_1563 Ribonuclease Dchromosome CDS1760015 1134 + 0.644621
NA Psyr_0701 Ribosomal protein L21chromosome CDS804786 312 + 0.50641
NA Psyr_0949 Peptide chain release factor 1chromosome CDS1084901 1083 + 0.600185
NA Psyr_4557 Ribosomal protein L10chromosome CDS5417169 501 - 0.548902
NA Psyr_1569 conserved hypothetical proteinchromosome CDS1764252 501 - 0.59481
NA Psyr_1639 Pseudouridine synthase, RluDchromosome CDS1846318 957 + 0.597701
NA Psyr_4402 Ribosomal protein L11 methyltransferasechromosome CDS5263765 879 + 0.637088
NA Psyr_2165 Ribosomal protein L20, bacterial and organelle formchromosome CDS2518493 357 + 0.52381
NA Psyr_4120 Ribosomal protein L13, bacterial and organelle formchromosome CDS4909097 429 - 0.547786
NA Psyr_2260 Amidasechromosome CDS2624092 1524 - 0.635827
NA Psyr_4543 Ribosomal protein L22, bacterial and organelle formchromosome CDS5400082 333 - 0.567568
NA Psyr_2428 GCN5-related N-acetyltransferasechromosome CDS2809850 477 - 0.536688
NA Psyr_1267 Cytidine/deoxycytidylate deaminase, zinc-binding regionchromosome CDS1431121 510 + 0.641176
NA Psyr_0128 conserved hypothetical proteinchromosome CDS137161 366 + 0.530055
NA Psyr_4188 Ribosomal RNA methyltransferase RrmJ/FtsJchromosome CDS4982078 651 - 0.560676
NA Psyr_1342 Peptidase M24A, methionine aminopeptidase, subfamily 1chromosome CDS1522121 783 - 0.578544
NA Psyr_0011 Glycyl-tRNA synthetase, beta subunitchromosome CDS11916 2055 - 0.623844
NA Psyr_1227 Queuosine biosynthesis proteinchromosome CDS1385354 1065 + 0.630986
NA Psyr_4119 Ribosomal protein S9chromosome CDS4908690 393 - 0.562341
NA Psyr_4327 Endoribonuclease L-PSPchromosome CDS5179913 384 - 0.653646
NA Psyr_4294 Histone deacetylase family proteinchromosome CDS5120635 570 - 0.617544
NA Psyr_2208 Amidasechromosome CDS2565581 1536 + 0.629557
NA Psyr_3619 Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminalchromosome CDS4303040 1674 - 0.622461
NA Psyr_3190 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS3819564 1131 + 0.603006
NA Psyr_2166 Phenylalanyl-tRNA synthetase, alpha subunitchromosome CDS2518954 1017 + 0.582104
NA Psyr_4177 Ribosomal protein S15, bacterial chloroplast and mitochondrial typechromosome CDS4969639 270 - 0.537037
NA Psyr_3938 Amidasechromosome CDS4683313 1374 - 0.657933
NA Psyr_0950 Modification methylase HemKchromosome CDS1085984 834 + 0.636691
NA Psyr_4548 Ribosomal protein L3chromosome CDS5402470 636 - 0.559748
NA Psyr_4336 Pseudouridine synthase, Rsuchromosome CDS5187591 633 - 0.649289
NA Psyr_2507 Endoribonuclease L-PSPchromosome CDS2916083 411 + 0.588808
NA Psyr_3761 conserved hypothetical proteinchromosome CDS4478980 591 + 0.593909
NA Psyr_0986 rRNA (guanine-N(2)-)-methyltransferasechromosome CDS1116474 999 - 0.625626
NA Psyr_0225 Ribosomal protein L33chromosome CDS239456 156 + 0.442308
NA Psyr_0707 Ribosomal protein S20pchromosome CDS810373 279 - 0.523297
NA Psyr_2749 Methionine--tRNA ligasechromosome CDS3337287 1500 - 0.641333
NA Psyr_4881 RNA methyltransferase TrmH, group 2chromosome CDS5792437 456 + 0.58114
NA Psyr_1249 Histidyl-tRNA synthetase, class IIachromosome CDS1404477 1290 + 0.606977
NA Psyr_1936 Dihydrouridine synthase TIM-barrel protein yjbNchromosome CDS2209059 1020 + 0.593137
NA Psyr_1283 RimM protein:PRC-barrelchromosome CDS1449236 540 + 0.538889
NA Psyr_1638 Ribonuclease E and Gchromosome CDS1842286 3363 - 0.620577
NA Psyr_0726 Pseudouridine synthase, RluDchromosome CDS830467 963 + 0.618899
NA Psyr_2107 Ribosome modulation factorchromosome CDS2459365 216 - 0.537037
NA Psyr_0376 D-tyrosyl-tRNA(Tyr) deacylasechromosome CDS401354 438 + 0.575342
NA Psyr_0022 SUA5/yciO/yrdC, N-terminalchromosome CDS25978 558 + 0.639785
NA Psyr_0997 Endoribonuclease L-PSPchromosome CDS1131257 384 - 0.611979
NA Psyr_4178 tRNA pseudouridine synthase Bchromosome CDS4970069 918 - 0.589325
NA Psyr_4535 Ribosomal protein S14chromosome CDS5396899 306 - 0.571895
NA Psyr_0236 Endoribonuclease L-PSPchromosome CDS250385 354 + 0.612994
NA Psyr_4550 Translation elongation factor Tu:Small GTP-binding protein domainchromosome CDS5403640 1194 - 0.544389
NA Psyr_3175 Seryl-tRNA synthetase, class IIachromosome CDS3802292 1281 - 0.608119
NA Psyr_0571 tRNA isopentenyltransferasechromosome CDS649554 972 + 0.589506
NA Psyr_2227 conserved hypothetical proteinchromosome CDS2588916 456 - 0.510965
NA Psyr_1086 Valyl-tRNA synthetase, class Iachromosome CDS1227714 2847 - 0.608711
NA Psyr_1796 GCN5-related N-acetyltransferasechromosome CDS2068573 516 - 0.598837
NA Psyr_0397 Arginyl-tRNA synthetase, class Icchromosome CDS423674 1740 - 0.612069
NA Psyr_4165 Glutamyl-tRNA(Gln) amidotransferase A subunitchromosome CDS4954141 1452 + 0.634298
NA Psyr_4547 Ribosomal protein L4/L1echromosome CDS5401855 603 - 0.543947
NA Psyr_4530 Ribosomal protein L30, bacterialchromosome CDS5394702 177 - 0.497175
NA Psyr_5137 Ribosomal protein L34chromosome CDS6092980 135 - 0.585185
NA Psyr_1977 Glutamyl-tRNA synthetase bacterial/mitochondrialchromosome CDS2294713 1482 + 0.607962
NA Psyr_3581 Pseudouridine synthase, Rsuchromosome CDS4264625 1230 - 0.637398
NA Psyr_1234 RNA methyltransferase TrmH, group 1chromosome CDS1392536 765 + 0.63268
NA Psyr_0580 RNA methyltransferase TrmH, group 3chromosome CDS662568 756 + 0.641534
NA Psyr_1285 Ribosomal protein L19chromosome CDS1450578 351 + 0.521368
NA Psyr_3648 Initiation factor 2B alpha/beta/deltachromosome CDS4333619 1098 - 0.638434
NA Psyr_0170 RNA-binding S4chromosome CDS185020 408 - 0.620098
NA Psyr_1392 Protein of unknown function UPF0004:Conserved hypothetical protein 1125chromosome CDS1572595 1344 - 0.611607
NA Psyr_4529 Ribosomal protein L15, bacterial formchromosome CDS5394264 435 - 0.577011
NA Psyr_1284 tRNA (guanine-N1-)-methyltransferasechromosome CDS1449781 753 + 0.567065
NA Psyr_0834 Glutamyl-tRNA synthetase, class Icchromosome CDS945989 888 - 0.628378
NA Psyr_1390 RNA-binding S4chromosome CDS1571249 711 - 0.607595
NA Psyr_4159 Ribonuclease E and Gchromosome CDS4948683 1458 - 0.593278
NA Psyr_0224 Ribosomal protein L28chromosome CDS239211 234 + 0.508547
NA Psyr_3639 Beta-lactamase-like:RNA-metabolisingmetallo-beta -lactamasechromosome CDS4321250 1443 - 0.566182
NA Psyr_1310 Peptide chain release factor 2chromosome CDS1487230 990 + 0.613131
NA Psyr_4526 Ribosomal protein S11chromosome CDS5391877 390 - 0.566667
NA Psyr_1662 tRNA pseudouridine synthasechromosome CDS1867089 855 + 0.604678
NA Psyr_4545 Ribosomal protein L2, bacterial and organelle formchromosome CDS5400720 825 - 0.569697
NA Psyr_1644 Ribosomal protein S32, bacterial and organelle formchromosome CDS1850231 183 + 0.535519
NA Psyr_2146 Peptidase M24A, methionine aminopeptidase, subfamily 1chromosome CDS2503827 792 + 0.590909
NA Psyr_3776 Cytosine deaminasechromosome CDS4495335 438 - 0.579909
NA Psyr_4189 Protein of unknown function UPF0044chromosome CDS4982832 312 + 0.525641
NA Psyr_5053 Asparaginasechromosome CDS5995267 1005 + 0.641791
NA Psyr_4380 Archaeal/bacterial translation initiation factor SUI1chromosome CDS5236285 372 + 0.610215
NA Psyr_1399 Prolyl-tRNA synthetase, bacterialchromosome CDS1584734 1716 - 0.600233
NA Psyr_4559 Ribosomal protein L11, bacterialchromosome CDS5418567 432 - 0.548611
NA Psyr_0941 Conserved hypothetical protein 92chromosome CDS1076491 1101 - 0.598547
NA Psyr_4539 Ribosomal protein S17chromosome CDS5398496 267 - 0.520599
NA Psyr_0173 S6 modification enzyme RimKchromosome CDS186867 906 + 0.592715
NA Psyr_0018 Methionyl-tRNA formyltransferasechromosome CDS22042 945 - 0.658201
NA Psyr_5059 GCN5-related N-acetyltransferasechromosome CDS6001350 669 + 0.605381
NA Psyr_3978 Amidasechromosome CDS4728595 1815 + 0.652893
NA Psyr_0213 Ribonuclease PHchromosome CDS227415 723 + 0.612725
NA Psyr_3872 conserved hypothetical proteinchromosome CDS4612321 1047 + 0.630372
NA Psyr_3033 conserved domain proteinchromosome CDS3631486 879 + 0.600683
NA Psyr_1931 hypothetical proteinchromosome CDS2204891 324 - 0.475309
NA Psyr_2359 conserved hypothetical proteinchromosome CDS2736159 546 + 0.617216
NA Psyr_5049 conserved hypothetical proteinchromosome CDS5990200 615 + 0.528455
NA Psyr_4148 Sigma 54 modulation protein/ribosomal protein S30EAchromosome CDS4936146 309 + 0.501618
NA Psyr_3791 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminalchromosome CDS4506809 1338 - 0.622571
NA Psyr_2164 Ribosomal protein L35chromosome CDS2518269 195 + 0.507692
NA Psyr_1734 Glutaminyl-tRNA synthetasechromosome CDS1968763 1695 + 0.60118
NA Psyr_4558 Ribosomal protein L1, bacterial and chloroplast formchromosome CDS5417872 696 - 0.553161
NA Psyr_2001 conserved hypothetical proteinchromosome CDS2322793 642 + 0.582555
NA Psyr_1850 Modification methylase HemKchromosome CDS2127861 909 + 0.613861
NA Psyr_5100 conserved hypothetical proteinchromosome CDS6052034 948 + 0.613924
NA Psyr_2163 Initiation factor 3chromosome CDS2517675 534 + 0.52809
NA Psyr_3399 Endoribonuclease L-PSPchromosome CDS4056388 399 + 0.636591
NA Psyr_0830 Poly(A) polymerasechromosome CDS939218 1476 - 0.607724
NA Psyr_0584 Ribosomal protein L9chromosome CDS665221 447 + 0.563758
NA Psyr_2014 conserved hypothetical proteinchromosome CDS2337733 576 - 0.611111
NA Psyr_4552 Ribosomal protein S7, bacterial and organelle formchromosome CDS5407001 471 - 0.558386
NA Psyr_1462 GCN5-related N-acetyltransferasechromosome CDS1649070 540 + 0.412963
NA Psyr_3585 Sua5/YciO/YrdC/YwlCchromosome CDS4268136 669 - 0.615845
NA Psyr_4446 SmpA/OmlAchromosome CDS5312525 339 + 0.554572
NA Psyr_0943 Ribosomal protein L25chromosome CDS1078362 615 - 0.56748
NA Psyr_4345 Protein of unknown function UPF0004:tRNA-i(6)A37 modification enzyme MiaBchromosome CDS5198298 1329 + 0.610233
NA Psyr_0702 Ribosomal protein L27chromosome CDS805130 276 + 0.572464
NA Psyr_0487 Glutathione synthetase, prokaryoticchromosome CDS524260 960 - 0.621875
NA Psyr_4287 tRNA (uracil-5-)-methyltransferasechromosome CDS5112792 1086 + 0.639042
NA Psyr_3780 Formylmethionine deformylasechromosome CDS4498007 540 - 0.605556
NA Psyr_4268 Amidasechromosome CDS5089512 1452 + 0.65978
NA Psyr_3920 Ribosomal protein L31chromosome CDS4663147 282 - 0.588652
NA Psyr_0504 conserved domain proteinchromosome CDS552941 2649 + 0.580974
NA Psyr_4556 Ribosomal protein L7/L12chromosome CDS5416724 366 - 0.516393
NA Psyr_1344 Elongation factor Tschromosome CDS1524151 864 + 0.553241
NA Psyr_4544 Ribosomal protein S19, bacterial and organelle formchromosome CDS5400428 276 - 0.503623
NA Psyr_3182 Translation initiation factor IF-1chromosome CDS3810426 219 + 0.547945
NA Psyr_1406 Aspartyl-tRNA synthetase bacterial/mitochondrial typechromosome CDS1592180 1776 + 0.605293
NA Psyr_1537 Amidasechromosome CDS1727496 1341 + 0.542133
NA Psyr_1296 conserved hypothetical proteinchromosome CDS1464224 879 - 0.590444
NA Psyr_0458 Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminalchromosome CDS494944 1890 - 0.643386
NA Psyr_1170 Amidasechromosome CDS1323843 1821 - 0.640308
NA Psyr_0399 Ribosomal protein L31chromosome CDS427900 222 + 0.554054
NA Psyr_4199 SmpA/OmlAchromosome CDS4995788 522 + 0.582375
NA Psyr_4551 Translation elongation factor G:Small GTP-binding protein domainchromosome CDS5404865 2106 - 0.540836
NA Psyr_2162 Threonyl-tRNA synthetase, class IIachromosome CDS2515735 1923 + 0.573583
NA Psyr_4166 Glutamyl-tRNA(Gln) amidotransferase B subunitchromosome CDS4955603 1446 + 0.60166
NA Psyr_0710 Isoleucyl-tRNA synthetase, class Iachromosome CDS813520 2832 + 0.610169
NA Psyr_4541 Ribosomal protein L16chromosome CDS5398956 414 - 0.567633
NA Psyr_0012 Glycyl-tRNA synthetase, alpha subunitchromosome CDS13967 1008 - 0.611111
NA Psyr_3729 hypothetical proteinchromosome CDS4437553 357 - 0.40056
NA Psyr_4123 Tryptophan--tRNA ligasechromosome CDS4912176 1350 - 0.613333
NA Psyr_4527 Ribosomal protein S13chromosome CDS5392297 357 - 0.535014
NA Psyr_3628 Elongation factor P (EF-P)chromosome CDS4310766 570 - 0.542105
NA Psyr_4352 Leucyl-tRNA synthetase bacterial/mitochondrial, class Iachromosome CDS5205329 2607 + 0.612198
NA Psyr_1070 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminalchromosome CDS1212230 1458 - 0.613169
NA Psyr_3891 hypothetical proteinchromosome CDS4632562 528 + 0.568182
NA Psyr_4537 Ribosomal protein L24chromosome CDS5397778 315 - 0.526984
NA Psyr_1311 Lysyl-tRNA synthetase, class-2chromosome CDS1488289 1503 + 0.600133
NA Psyr_3058 Amidasechromosome CDS3655602 1404 - 0.636752
NA Psyr_3642 Ribosomal protein S1chromosome CDS4323992 1692 - 0.549054
NA Psyr_2669 Aminoglycoside phosphotransferasechromosome CDS3240608 804 + 0.562189
NA Psyr_0516 Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminalchromosome CDS572766 1422 - 0.614627
NA Psyr_4404 Dihydrouridine synthase TIM-barrel protein nifR3chromosome CDS5266307 1014 + 0.601578
NA Psyr_4634 Polynucleotide adenylyltransferase:Metal-dependent phosphohydrolase, HD subdomainchromosome CDS5495417 1227 + 0.602282
NA Psyr_2243 Endoribonuclease L-PSPchromosome CDS2607675 402 - 0.609453
NA Psyr_2691 Formyl transferase, N-terminal:Formyl transferase, C-terminalchromosome CDS3267178 1995 + 0.596491
NA Psyr_0581 Ribosomal protein S6chromosome CDS663581 426 + 0.556338
NA Psyr_4253 Peptide chain release factor 3:Small GTP-binding protein domainchromosome CDS5070353 1584 + 0.601641
NA Psyr_2133 Pseudouridine synthasechromosome CDS2493154 942 + 0.609342
NA Psyr_4549 Ribosomal protein S10, bacterial formchromosome CDS5403187 375 - 0.528
NA Psyr_4164 Glutamyl-tRNA(Gln) amidotransferase C subunitchromosome CDS4953839 288 + 0.59375
NA Psyr_2526 similar to Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase)chromosome CDS2936598 1587 - 0.58097
NA Psyr_2794 Protein of unknown function DUF264chromosome CDS3377410 1302 - 0.579109
NA Psyr_4540 Ribosomal protein L29chromosome CDS5398765 192 - 0.526042
NA Psyr_4553 Ribosomal protein S12, bacterial and chloroplast formchromosome CDS5407594 372 - 0.548387
NA Psyr_0942 Peptidyl-tRNA hydrolasechromosome CDS1077613 585 - 0.601709
NA Psyr_4571 Protein of unknown function DUF805chromosome CDS5435070 915 + 0.602186
NA Psyr_4523 Ribosomal protein L17chromosome CDS5389786 387 - 0.573643
NA Psyr_3556 Alanyl-tRNA synthetase, class IIcchromosome CDS4235102 2700 - 0.596667
NA Psyr_4525 Ribosomal protein S4, bacterial and organelle formchromosome CDS5391238 621 - 0.529791
NA Psyr_1343 Ribosomal protein S2, bacterial and organelle formchromosome CDS1523217 744 + 0.548387
NA Psyr_4180 Initiation factor 2:Small GTP-binding protein domainchromosome CDS4971566 2526 - 0.600158
NA Psyr_1228 Queuine/other tRNA-ribosyltransferase:Queuine tRNA-ribosyltransferasechromosome CDS1386415 1134 + 0.600529
NA Psyr_1883 Hypothetical proteinchromosome CDS2154712 258 + 0.523256
NA Psyr_2651 conserved hypothetical proteinchromosome CDS3222424 960 + 0.526042
NA Psyr_0017 Fmu, rRNA SAM-dependent methyltransferasechromosome CDS20699 1347 - 0.653304
NA Psyr_2887 Endoribonuclease L-PSPchromosome CDS3464138 435 - 0.606897
NA Psyr_4622 Nucleotidyl transferasechromosome CDS5480647 723 - 0.60166
NA Psyr_1979 Dihydrouridine synthase, DuSchromosome CDS2297844 966 + 0.628364
NA Psyr_0019 Formylmethionine deformylasechromosome CDS23040 507 - 0.556213
NA Psyr_4536 Ribosomal protein L5:Ribosomal protein L5chromosome CDS5397218 540 - 0.52037
NA Psyr_1346 Ribosome recycling factorchromosome CDS1525960 558 + 0.580645
NA Psyr_1610 Pseudouridine synthasechromosome CDS1813864 636 - 0.610063
NA Psyr_4533 Ribosomal protein L6chromosome CDS5395746 534 - 0.558052
NA Psyr_1282 Ribosomal protein S16chromosome CDS1448973 258 + 0.573643
NA Psyr_3981 Pseudouridine synthase, Rsuchromosome CDS4734188 693 + 0.606061
NA Psyr_2838 conserved hypothetical proteinchromosome CDS3411904 348 + 0.603448
NA Psyr_1728 tRNA--hydroxylasechromosome CDS1962478 612 + 0.599673
NA Psyr_4176 Polyribonucleotide nucleotidyltransferasechromosome CDS4967358 2106 - 0.590218
NA Psyr_4297 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminalchromosome CDS5123836 1329 - 0.62152
NA Psyr_2351 tRNA synthetases, class-II (G, H, P and S)chromosome CDS2727077 582 - 0.618557
NA Psyr_4627 RRNA 16S rRNA dimethylasechromosome CDS5487636 807 + 0.6171
NA Psyr_4639 Ribosomal protein S21chromosome CDS5499502 216 + 0.555556
NA Psyr_1735 Cysteinyl-tRNA synthetase, class Iachromosome CDS1970482 1383 + 0.610268
NA Psyr_4565 Tyrosyl-tRNA synthetase, class Ibchromosome CDS5428772 1212 - 0.568482
NA Psyr_0582 Ribosomal protein S18chromosome CDS664035 231 + 0.545455
NA Psyr_4531 Ribosomal protein S5, bacterial and organelle formchromosome CDS5394881 501 - 0.54491
NA Psyr_4542 ribosomal protein S3chromosome CDS5399382 687 - 0.52984
NA Psyr_4532 Ribosomal protein L18chromosome CDS5395385 351 - 0.595442
NA Psyr_3579 Class I peptide chain release factorchromosome CDS4262499 414 - 0.625604
NA Psyr_4279 rRNA (guanine-N(2)-)-methyltransferasechromosome CDS5103190 1125 + 0.639111
NA Psyr_3696 tRNA (uracil-5-)-methyltransferase/TrmAchromosome CDS4383042 1356 - 0.615782
NA Psyr_4928 conserved hypothetical proteinchromosome CDS5841367 588 - 0.62415
NA Psyr_4921 unnamed protein product; similar to bacteriophage proteinchromosome CDS5834418 378 - 0.621693
NA Psyr_4538 Ribosomal protein L14, bacterial and organelle formchromosome CDS5398104 369 - 0.544715
NA Psyr_4179 Ribosome-binding factor Achromosome CDS4970990 417 - 0.585132
NA Psyr_3833 Plasmid stabilization systemchromosome CDS4569228 291 + 0.512028