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2024-05-05 13:27:21

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Silicibacter pomeroyi DSS-3, DSS-3

Number of genes found: 180

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Silicibacter pomeroyi DSS-3, DSS-3
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SPO3248 acetyltransferase, GNAT familychromosome CDS3451603 537 + 0.659218
NA SPO3533 translation elongation factor G, putativechromosome CDS3741694 2007 + 0.658695
NA SPO2374 tRNA-dihydrouridine synthase Achromosome CDS2517869 1035 - 0.662802
NA SPO1685 tRNA synthetase, class I family proteinchromosome CDS1791878 840 - 0.646429
NA SPO1893 ribonuclease, Rne/Rng familychromosome CDS2017824 2982 + 0.658954
NA SPO3069 ribosomal-protein-alanine acetyltransferase, putativechromosome CDS3277751 585 - 0.652991
NA SPO0127 peptidyl-tRNA hydrolase domain proteinchromosome CDS134704 420 + 0.690476
NA SPO3250 acetyltransferase, GNAT familychromosome CDS3452642 519 + 0.682081
NA SPO3567 ribonuclease T2 family proteinchromosome CDS3779864 630 + 0.655556
NA SPO0136 conserved hypothetical proteinchromosome CDS148600 2046 - 0.69697
NA SPO1418 S4 domain proteinchromosome CDS1490346 303 + 0.69637
NA SPO1150 RNA methyltransferase, TrmH family, group 3chromosome CDS1205883 774 + 0.664083
NA SPO2037 NOL1/NOP2/sun family proteinchromosome CDS2165997 1176 - 0.714286
NA SPO2124 RNA pseudouridylate synthasechromosome CDS2257748 603 + 0.686567
NA SPO0847 non-ribosomal peptide synthetasechromosome CDS885859 4605 - 0.685559
NA SPO2460 modification methylase, HemK familychromosome CDS2614200 816 - 0.709559
NA SPO0062 conserved hypothetical proteinchromosome CDS65364 624 - 0.616987
NA SPO0277 MiaB-like tRNA modifying enzymechromosome CDS292631 1257 - 0.655529
NA SPO0297 Sua5/YciO/YrdC family proteinchromosome CDS310446 951 - 0.707676
NA SPO0026 polyA polymerase family proteinchromosome CDS24424 1155 + 0.687446
NA SPO2226 S-adenosylmethionine:tRNAribosyltransferase-isom erasechromosome CDS2367563 1050 - 0.652381
NA SPO3833 ATP-dependent RNA helicase, DEAD/DEAH box familychromosome CDS4048549 2130 + 0.682629
NA SPO2983 cytidine and deoxycytidylate deaminase family proteinchromosome CDS3180552 480 - 0.729167
NA SPO2709 endoribonuclease L-PSP, putativechromosome CDS2863232 405 + 0.664198
NA SPO3765 conserved hypothetical proteinchromosome CDS3974236 474 + 0.662447
NA SPO3247 acetyltransferase, GNAT familychromosome CDS3451064 543 + 0.6814
NA SPO1676 acetyltransferase, GNAT familychromosome CDS1783186 513 - 0.647173
NA SPO2583 amidase family proteinchromosome CDS2735120 1404 - 0.694444
NA SPO1489 indole acetamide hydrolasechromosome CDS1561657 1380 + 0.673188
NA SPO3418 amidase family proteinchromosome CDS3621379 1329 - 0.699774
NA SPO2938 amidase family proteinchromosome CDS3137529 1431 + 0.690426
NA SPO2000 endoribonuclease L-PSP family proteinchromosome CDS2129470 354 - 0.644068
NA SPO3730 endoribonuclease L-PSP family proteinchromosome CDS3943553 459 + 0.62963
NA SPO0083 exonuclease, putativechromosome CDS81366 615 - 0.629268
NA SPO3120 ribosomal protein L11 methyltransferase, putativechromosome CDS3328744 879 - 0.650739
NA SPO2324 conserved hypothetical proteinchromosome CDS2459957 417 + 0.585132
NA SPO3680 endoribonuclease L-PSP family proteinchromosome CDS3889104 417 - 0.592326
NA SPO2273 acetyltransferase, GNAT familychromosome CDS2412853 540 - 0.683333
NA SPO2089 tRNA-dihydrouridine synthase, putativechromosome CDS2227489 984 - 0.689024
NA SPO0078 ribosomal subunit interface protein, putativechromosome CDS77723 564 - 0.58156
NA SPO3251 conserved hypothetical proteinchromosome CDS3453157 603 + 0.636816
NA SPO1987 acetyltransferase, GNAT familychromosome CDS2115261 537 - 0.631285
NA SPO3249 acetyltransferase, GNAT familychromosome CDS3452136 510 + 0.684314
NA SPO2055 RNA methyltransferase, TrmH family, group 1chromosome CDS2187757 747 - 0.672021
NA SPO3022 valyl-tRNA synthetasechromosome CDS3224640 3063 + 0.636631
NA SPO3184 acetyltransferase, GNAT familychromosome CDS3393940 708 - 0.641243
NA SPO2949 endoribonuclease L-PSP family proteinchromosome CDS3147750 345 - 0.663768
NA SPO3871 nucleotidyltransferase family proteinchromosome CDS4084087 687 + 0.663755
NA SPO1005 endoribonuclease L-PSP family proteinchromosome CDS1057373 516 + 0.629845
NA SPO1417 helicase, putativechromosome CDS1487460 2880 + 0.676042
NA SPO2462 conserved hypothetical proteinchromosome CDS2616122 330 + 0.615152
NA SPO2984 RNA pseudouridylate synthase family proteinchromosome CDS3181093 1164 + 0.710481
NA SPO0880 conserved hypothetical proteinchromosome CDS938111 792 + 0.669192
NA SPO0482 NADH-ubiquinone oxidoreductase family proteinchromosome CDS485983 312 - 0.666667
NA SPOA0079 ribonuclease, Rne/Rng familymegaplasmid CDS74524 1023 + 0.666667
NA SPO3655 methyltransferase, putativechromosome CDS3857493 966 - 0.693582
NA SPO2695 peptide chain release factor 3chromosome CDS2846764 1608 + 0.619403
NA SPOA0400 endoribonuclease L-PSP family proteinmegaplasmid CDS446685 396 - 0.628788
NA SPO2408 hypothetical proteinchromosome CDS2559208 636 - 0.591195
NA SPO2490 lipoprotein, SmpA/OmlA familychromosome CDS2640575 468 - 0.634615
NA SPO3376 ribosomal RNA small subunit methyltransferase B, putativechromosome CDS3578939 1272 - 0.705975
NA SPO2931 conserved domain proteinchromosome CDS3129647 1185 - 0.649789
NA SPO0944 RNA modification enzyme, MiaB-familychromosome CDS993168 1401 - 0.638829
alaS SPO2033 alanyl-tRNA synthetasechromosome CDS2158898 2673 - 0.649832
argS SPO2504 arginyl-tRNA synthetasechromosome CDS2650533 1746 - 0.636312
aspS SPO0926 aspartyl-tRNA synthetasechromosome CDS983055 1782 + 0.652076
cysS SPO2131 cysteinyl-tRNA synthetasechromosome CDS2264124 1398 - 0.587983
def-1 SPO3217 peptide deformylasechromosome CDS3423795 498 - 0.674699
def-2 SPO3218 peptide deformylasechromosome CDS3424289 498 - 0.654619
def-3 SPO3219 peptide deformylasechromosome CDS3424783 519 - 0.606936
dtd SPO2992 D-tyrosyl-tRNA(Tyr) deacylasechromosome CDS3189696 438 + 0.664384
efp SPO1244 translation elongation factor Pchromosome CDS1313163 564 + 0.599291
fmt SPO3216 methionyl-tRNA formyltransferasechromosome CDS3422885 906 - 0.701987
frr SPO1664 ribosome recycling factorchromosome CDS1771943 564 + 0.617021
fusA SPO3499 translation elongation factor Gchromosome CDS3703463 2118 - 0.609537
gatA SPO2969 glutamyl-tRNA(Gln) amidotransferase, A subunitchromosome CDS3165885 1491 - 0.661972
gatB SPO2847 glutamyl-tRNA(Gln) amidotransferase, B subunitchromosome CDS3045154 1512 + 0.613095
gatC SPO2970 glutamyl-tRNA(Gln) amidotransferase, C subunitchromosome CDS3167379 288 - 0.635417
gid SPO1686 gid proteinchromosome CDS1792746 1350 - 0.652593
gltX-1 SPO0430 glutamyl-tRNA synthetasechromosome CDS445622 1332 + 0.663664
gltX-2 SPO2156 glutamyl-tRNA synthetasechromosome CDS2292177 1407 + 0.635394
glyQ SPO1355 glycyl-tRNA synthetase, alpha subunitchromosome CDS1416986 936 + 0.646368
glyS SPO1358 glycyl-tRNA synthetase, beta subunitchromosome CDS1420430 2208 + 0.653986
gshB SPO0401 glutathione synthetasechromosome CDS413677 933 + 0.625938
hisS SPO0667 histidyl-tRNA synthetasechromosome CDS692935 1488 + 0.65457
ileS SPO3136 isoleucyl-tRNA synthetasechromosome CDS3343681 2913 - 0.644353
infA SPOA0077 translation initiation factor IF-1megaplasmid CDS73720 219 + 0.552511
infB SPO0061 translation initiation factor IF-2chromosome CDS62848 2508 - 0.650319
infC SPO2638 translation initiation factor IF-3chromosome CDS2791446 549 + 0.579235
ksgA SPO2458 dimethyladenosine transferasechromosome CDS2612325 840 + 0.691667
leuS SPO3432 leucyl-tRNA synthetasechromosome CDS3634559 2559 + 0.627198
lysS SPO0455 lysyl-tRNA synthetasechromosome CDS465480 1647 + 0.630237
map SPO3761 methionine aminopeptidase, type Ichromosome CDS3970517 810 + 0.628395
metG SPO1403 methionyl-tRNA synthetasechromosome CDS1472241 1719 - 0.638743
miaA SPO1661 tRNA delta(2)-isopentenylpyrophosphate transferasechromosome CDS1769266 876 - 0.716895
miaB SPOA0002 tRNA-i(6)A37 thiotransferase enzyme MiaBmegaplasmid CDS1804 1389 + 0.647948
nylA SPO2527 6-aminohexanoate-cyclic-dimer hydrolasechromosome CDS2675136 1440 - 0.634722
pheS SPO3594 phenylalanyl-tRNA synthetase, alpha subunitchromosome CDS3801673 1074 - 0.647114
pnp SPO3389 polyribonucleotide nucleotidyltransferasechromosome CDS3591258 2145 - 0.625641
prfA SPO2461 peptide chain release factor 1chromosome CDS2615039 1056 - 0.660985
prfB SPO2585 peptide chain release factor 2chromosome CDS2737185 1128 - 0.624114
proS SPO1121 prolyl-tRNA synthetasechromosome CDS1177999 1395 + 0.630824
pth SPO0811 peptidyl-tRNA hydrolasechromosome CDS844717 720 - 0.686111
rbfA SPO3835 ribosome-binding factor Achromosome CDS4051580 396 + 0.65404
rhlE SPO1443 ATP-dependent RNA helicase RhlEchromosome CDS1513975 1416 - 0.659605
rimM SPO3255 16S rRNA processing protein RimMchromosome CDS3455284 504 + 0.644841
rluA SPO3392 ribosomal large subunit pseudouridine synthase Achromosome CDS3595235 648 - 0.649691
rluC SPO0516 ribosomal large subunit pseudouridine synthase Cchromosome CDS512820 1044 + 0.668582
rluD SPO1408 ribosomal large subunit pseudouridine synthase Dchromosome CDS1478481 1029 + 0.682216
rnd SPO2167 ribonuclease Dchromosome CDS2303155 1158 - 0.649396
rph SPO0008 ribonuclease PHchromosome CDS6294 714 - 0.648459
rplA SPO3513 ribosomal protein L1chromosome CDS3723558 699 - 0.635193
rplB SPO0484 ribosomal protein L2chromosome CDS487568 843 + 0.627521
rplC SPO3825 ribosomal protein L3chromosome CDS4040878 726 - 0.632231
rplD SPO3824 ribosomal protein L4chromosome CDS4040264 618 - 0.635922
rplE SPO0497 ribosomal protein L5chromosome CDS497896 561 + 0.565062
rplF SPO0500 ribosomal protein L6chromosome CDS499197 534 + 0.614232
rplI SPO2283 ribosomal protein L9chromosome CDS2421112 603 + 0.646766
rplJ SPO3510 ribosomal protein L10chromosome CDS3720709 549 - 0.584699
rplK SPO3514 ribosomal protein L11chromosome CDS3724258 426 - 0.598592
rplL SPO3509 ribosomal protein L7/L12chromosome CDS3720252 378 - 0.582011
rplM SPO1691 ribosomal protein L13chromosome CDS1797669 459 + 0.605664
rplN SPO0495 ribosomal protein L14chromosome CDS497221 369 + 0.590786
rplO SPO0505 ribosomal protein L15chromosome CDS502782 651 + 0.623656
rplP SPO0488 ribosomal protein L16chromosome CDS489796 414 + 0.611111
rplQ SPO0512 ribosomal protein L17chromosome CDS508954 423 + 0.63357
rplR SPO0501 ribosomal protein L18chromosome CDS499742 360 + 0.619444
rplS SPO3257 ribosomal protein L19chromosome CDS3456557 384 - 0.614583
rplT SPO3598 ribosomal protein L20chromosome CDS3805961 366 - 0.647541
rplU SPO1990 ribosomal protein L21chromosome CDS2116786 582 - 0.62543
rplV SPO0486 ribosomal protein L22chromosome CDS488696 381 + 0.585302
rplW SPO3823 ribosomal protein L23chromosome CDS4039971 297 - 0.565657
rplX SPO0496 ribosomal protein L24chromosome CDS497592 312 + 0.628205
rplY SPO0812 ribosomal protein L25chromosome CDS845578 624 - 0.625
rpmA SPO1989 ribosomal protein L27chromosome CDS2116505 270 - 0.611111
rpmB SPO0974 ribosomal protein L28chromosome CDS1027916 288 + 0.638889
rpmC SPO0493 ribosomal protein L29chromosome CDS496675 201 + 0.58209
rpmD SPO0503 ribosomal protein L30chromosome CDS500799 189 + 0.613757
rpmE SPO3256 ribosomal protein L31chromosome CDS3456324 222 - 0.576577
rpmF SPO2492 ribosomal protein L32chromosome CDS2641875 207 + 0.618357
rpmG SPO2965 ribosomal protein L33chromosome CDS3163621 168 - 0.547619
rpmH SPO0538 ribosomal protein L34chromosome CDS533296 150 - 0.64
rpmI SPO3599 ribosomal protein L35chromosome CDS3806342 201 - 0.61194
rpmJ SPO3284 ribosomal protein L36chromosome CDS3481200 138 + 0.623188
rpsA SPO0802 ribosomal protein S1chromosome CDS837242 1677 + 0.618366
rpsB SPO1976 ribosomal protein S2chromosome CDS2105951 774 - 0.656331
rpsC SPO0487 ribosomal protein S3chromosome CDS489076 708 + 0.622881
rpsD SPO3181 ribosomal protein S4chromosome CDS3389785 621 - 0.626409
rpsE SPO0502 ribosomal protein S5chromosome CDS500214 573 + 0.642234
rpsF SPO2281 ribosomal protein S6chromosome CDS2420491 354 + 0.610169
rpsG SPO3500 ribosomal protein S7chromosome CDS3705599 471 - 0.611465
rpsH SPO0499 ribosomal protein S8chromosome CDS498792 393 + 0.59542
rpsJ SPO3826 ribosomal protein S10chromosome CDS4041620 315 - 0.596825
rpsK SPO0510 ribosomal protein S11chromosome CDS507251 393 + 0.625954
rpsL SPO3501 ribosomal protein S12chromosome CDS3706085 372 - 0.594086
rpsM SPO0509 ribosomal protein S13chromosome CDS506867 369 + 0.607046
rpsN SPO0498 ribosomal protein S14chromosome CDS498474 306 + 0.588235
rpsO SPO3840 ribosomal protein S15chromosome CDS4055583 270 + 0.596296
rpsP SPO3253 ribosomal protein S16chromosome CDS3454125 366 + 0.642076
rpsQ SPO0494 ribosomal protein S17chromosome CDS496888 231 + 0.549784
rpsR SPO2282 ribosomal protein S18chromosome CDS2420872 228 + 0.631579
rpsS SPO0485 ribosomal protein S19chromosome CDS488414 279 + 0.541219
rpsT SPO0148 ribosomal protein S20chromosome CDS163518 264 + 0.632576
rpsU SPO0229 ribosomal protein S21chromosome CDS248574 207 - 0.550725
rrmJ SPO1858 ribosomal RNA large subunit methyltransferase Jchromosome CDS1977167 702 - 0.638177
rspI SPO1692 ribosomal protein S9chromosome CDS1798133 483 + 0.650104
rumA SPO0029 23S rRNA (Uracil-5-)-methyltransferase rumAchromosome CDS29456 1254 + 0.696172
serS SPO2325 seryl-tRNA synthetasechromosome CDS2460515 1293 + 0.66976
tgt SPO2616 queuine tRNA-ribosyltransferasechromosome CDS2772306 1131 - 0.648983
thrS SPO1282 threonyl-tRNA synthetasechromosome CDS1346148 1947 - 0.632768
trmD SPO3259 tRNA (guanine-N1)-methyltransferasechromosome CDS3458262 732 + 0.67623
trmU SPO1677 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS1783688 1128 - 0.656028
trpS SPO0392 tryptophanyl-tRNA synthetasechromosome CDS404139 1017 - 0.600787
truA SPO3143 tRNA pseudouridine synthase Achromosome CDS3351843 789 + 0.695817
truB SPO3837 tRNA pseudouridine synthase Bchromosome CDS4052835 912 + 0.663377
tsf SPO1975 translation elongation factor Tschromosome CDS2104998 876 - 0.638128
tuf-1 SPO0728 translation elongation factor Tuchromosome CDS756639 1176 + 0.625
tuf-2 SPO3498 translation elongation factor Tuchromosome CDS3701731 1176 - 0.625
tyrS SPO2484 tyrosyl-tRNA synthetasechromosome CDS2634665 1248 + 0.622596
ychF SPO0817 GTP-binding protein YchFchromosome CDS849588 1098 + 0.628415