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2024-05-06 23:57:35

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Vibrio fischeri ES114, ES114

Number of genes found: 204

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Vibrio fischeri ES114, ES114
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA VF0759 tRNA 2-methylthioadenosine synthasechromosome I CDS827956 1425 - 0.418246
NA VFA0870 TcpD, toxin co-regulated pilus biosynthesis proteinchromosome II CDS983861 780 - 0.248718
NA VFA0154 ATP-dependent RNA helicase DbpAchromosome II CDS171550 1389 - 0.403888
NA VF0862 LSU ribosomal protein L25Pchromosome I CDS948157 279 - 0.476703
NA VF0237 LSU ribosomal protein L1E (= L4P)chromosome I CDS254630 603 + 0.447761
NA VF0839 arginyl-tRNA synthetasechromosome I CDS926169 1734 - 0.424452
NA VF0258 LSU ribosomal protein L36Pchromosome I CDS264193 114 + 0.412281
NA VF0233 protein translation elongation factor Tu (EF-TU)chromosome I CDS252063 1185 + 0.459072
NA VF0809 glutaminyl-tRNA synthetasechromosome I CDS889641 1659 + 0.394213
NA VF0259 SSU ribosomal protein S13Pchromosome I CDS264456 357 + 0.456583
NA VF2345 23S rRNA methyltransferasechromosome I CDS2641141 480 + 0.427083
NA VFA0553 ATP-dependent RNA helicasechromosome II CDS637578 1383 + 0.388286
NA VF1748 ribonuclease Echromosome I CDS1973075 2985 + 0.423786
NA VF0239 LSU ribosomal protein L2Pchromosome I CDS255547 825 + 0.467879
NA VFA1155 peptidyl-tRNA hydrolasechromosome II CDS1298681 414 + 0.415459
NA VF0243 LSU ribosomal protein L16Pchromosome I CDS257742 411 + 0.476886
NA VF0723 16S rRNA m(2)G 966 methyltransferasechromosome I CDS790217 1149 - 0.369887
NA VF2081 23S rRNA m(5)U 1939 methyltransferasechromosome I CDS2322794 1350 - 0.380741
NA VF0453 Lysyl-tRNA synthetasechromosome I CDS482802 1506 + 0.413015
NA VF2417 LSU ribosomal protein L1Pchromosome I CDS2712997 417 - 0.419664
NA VFA0151 ATP-dependent RNA helicasechromosome II CDS166800 1503 + 0.407851
NA VF2415 LSU ribosomal protein L12P (L7/L12)chromosome I CDS2711835 369 - 0.455285
NA VF0250 SSU ribosomal protein S14Pchromosome I CDS260033 306 + 0.454248
NA VF0682 prolyl-tRNA synthetasechromosome I CDS744946 1728 - 0.436343
NA VF0279 LSU ribosomal protein L27Pchromosome I CDS286135 258 + 0.422481
NA VF0241 LSU ribosomal protein L22Pchromosome I CDS256680 333 + 0.435435
NA VF1328 ferrichrome-binding proteinchromosome I CDS1477679 537 - 0.353817
NA VF0236 LSU ribosomal protein L3Pchromosome I CDS254091 522 + 0.454023
NA VF0101 D-tyrosyl-tRNA(Tyr) deacylasechromosome I CDS119748 435 + 0.427586
NA VF0271 ribosomal large subunit pseudouridine synthase Achromosome I CDS277334 738 + 0.395664
NA VF1959 ribosome recycling factor (RRF)chromosome I CDS2195217 558 - 0.396057
NA VF1962 SSU ribosomal protein S2Pchromosome I CDS2197673 729 - 0.422497
NA VF0286 dimethyladenosine transferasechromosome I CDS290833 819 - 0.411477
NA VFA0133 hypothetical proteinchromosome II CDS148104 420 - 0.385714
NA VF1764 bacterial protein translation initiation factor 1 (IF-1)chromosome I CDS1993331 219 + 0.39726
NA VF1727 tyrosyl-tRNA synthetasechromosome I CDS1952605 1281 - 0.401249
NA VF1776 ribosomal large subunit pseudouridine synthase Echromosome I CDS2008265 621 + 0.404187
NA VF0263 LSU ribosomal protein L17Pchromosome I CDS266925 381 + 0.472441
NA VF0376 ribonuclease Gchromosome I CDS407993 1470 + 0.397959
NA VF2390 tRNA-dihydrouridine synthasechromosome I CDS2686095 798 + 0.454887
NA VFA0629 hypothetical proteinchromosome II CDS707935 363 - 0.330579
NA VF2222 LSU ribosomal protein L13Pchromosome I CDS2499827 429 - 0.426573
NA VFA0162 N(6)-hydroxylysine O-acetyltransferasechromosome II CDS182487 912 + 0.380482
NA VFA0485 ribosomal large subunit pseudouridine synthase Achromosome II CDS559197 1701 - 0.392122
NA VFA0002 translation initiation inhibitorchromosome II CDS3388 348 + 0.428161
NA VF0247 LSU ribosomal protein L14Pchromosome I CDS259067 66 + 0.409091
NA VF2418 LSU ribosomal protein L1Pchromosome I CDS2713439 261 - 0.455939
NA VF0252 LSU ribosomal protein L6Pchromosome I CDS260773 534 + 0.44382
NA VF0261 SSU ribosomal protein S4Pchromosome I CDS265255 621 + 0.439614
NA VF2166 poly(A) polymerasechromosome I CDS2442163 906 + 0.398455
NA VF1961 protein translation elongation factor Ts (EF-Ts)chromosome I CDS2196694 846 - 0.43617
NA VF0551 tRNA (guanine-N(1)-)-methyltransferasechromosome I CDS599779 750 + 0.438667
NA VF0256 LSU ribosomal protein L15Pchromosome I CDS262375 297 + 0.461279
NA VF0552 LSU ribosomal protein L19Pchromosome I CDS600570 354 + 0.446328
NA VF2419 LSU ribosomal protein L11Pchromosome I CDS2713704 429 - 0.452214
NA VF0452 bacterial peptide chain release factor 2 (RF-2)chromosome I CDS482042 747 + 0.413655
NA VF1216 bacterial protein translation initiation factor 3 (IF-3)chromosome I CDS1354587 471 + 0.452229
NA VF0182 glucose-1-phosphate cytidylyltransferasechromosome I CDS201702 774 + 0.374677
NA VF0251 SSU ribosomal protein S8Pchromosome I CDS260368 393 + 0.452926
NA VF0762 hypothetical proteinchromosome I CDS833555 522 - 0.394636
NA VF0246 LSU ribosomal protein L14Pchromosome I CDS258762 309 + 0.469256
NA VF1078 hypothetical proteinchromosome I CDS1193030 405 - 0.377778
NA VF1790 ATP-dependent RNA helicasechromosome I CDS2025680 1197 + 0.379282
NA VF0055 ATP-dependent RNA helicase RhlBchromosome I CDS62978 1032 - 0.426357
NA VF1644 L-asparaginasechromosome I CDS1853307 1014 + 0.412229
NA VF2338 protein translation elongation factor P (EF-P)chromosome I CDS2634315 567 - 0.395062
NA VF1784 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome I CDS2018250 1125 + 0.408
NA VF2310 LSU ribosomal protein L9Pchromosome I CDS2604296 450 - 0.44
NA VF0230 SSU ribosomal protein S12Pchromosome I CDS248787 375 + 0.450667
NA VF0908 seryl-tRNA synthetasechromosome I CDS1002947 1308 + 0.433486
NA VFA0635 hypothetical proteinchromosome II CDS712751 474 - 0.329114
NA VF0386 ribosome-associated factor Ychromosome I CDS421033 288 - 0.336806
NA VF0244 LSU ribosomal protein L29Pchromosome I CDS258152 192 + 0.4375
NA VF1459 translation initiation inhibitorchromosome I CDS1618408 378 + 0.354497
NA VF1600 cysteinyl-tRNA synthetasechromosome I CDS1798575 1386 - 0.39899
NA VF0769 peptide release factor-glutamine N5-methyltransferasechromosome I CDS839896 855 + 0.389474
NA VF0653 23S rRNA methyltransferasechromosome I CDS717753 510 + 0.401961
NA VF0240 SSU ribosomal protein S19Pchromosome I CDS256391 279 + 0.455197
NA VF1235 phenylalanyl-tRNA synthetase alpha chainchromosome I CDS1375146 984 + 0.440041
NA VF0487 ribosome-binding factor Achromosome I CDS524451 408 + 0.411765
NA VF1365 hypothetical proteinchromosome I CDS1512536 459 - 0.3878
NA VF0056 ATP-dependent RNA helicase RhlBchromosome I CDS64060 216 - 0.472222
NA VF1999 small protein Achromosome I CDS2241084 357 + 0.406162
NA VF2544 methionyl-tRNA formyltransferasechromosome I CDS2872413 948 + 0.431435
NA VF0435 glutathione synthetasechromosome I CDS462749 948 - 0.411392
NA VF2244 tRNA nucleotidyltransferasechromosome I CDS2527473 1224 + 0.423203
NA VF0642 translation initiation inhibitorchromosome I CDS701560 381 - 0.375328
NA VF1291 ribosome modulation factorchromosome I CDS1445171 174 + 0.482759
NA VFB50 relaxasepES100 CDS38417 3336 + 0.370204
NA VF1747 ribosomal large subunit pseudouridine synthase Cchromosome I CDS1971684 948 - 0.387131
NA VF0464 SSU ribosomal protein S20Pchromosome I CDS495741 183 - 0.442623
NA VF1638 tRNA-dihydrouridine synthasechromosome I CDS1843624 948 + 0.402954
NA VF2324 tRNA delta(2)-isopentenylpyrophosphate transferasechromosome I CDS2617717 933 - 0.419078
NA VF2250 SSU ribosomal protein S21Pchromosome I CDS2532648 216 + 0.476852
NA VF0486 bacterial protein translation initiation factor 2 (IF-2)chromosome I CDS521658 2682 + 0.432886
NA VF0477 hypothetical RNA binding proteinchromosome I CDS513390 297 - 0.363636
NA VF0500 bacterial peptide chain release factor 3 (RF-3)chromosome I CDS536909 1581 + 0.426312
NA VFA0385 spermidine N1-acetyltransferasechromosome II CDS436818 537 + 0.331471
NA VF1345 ribosomal-protein-serine acetyltransferasechromosome I CDS1491737 540 - 0.372222
NA VF2333 lysyl-tRNA synthetase GenXchromosome I CDS2629341 987 - 0.395137
NA VF0004 ribonuclease P protein componentchromosome I CDS4133 354 - 0.423729
NA VF1969 queuine tRNA-ribosyltransferasechromosome I CDS2206160 1128 - 0.416667
NA VF1272 protein translation elongation factor P (EF-P)chromosome I CDS1415040 567 + 0.410935
NA VFA0750 ribosomal-protein-S5-alanine acetyltransferasechromosome II CDS847485 558 - 0.385305
NA VF1759 SSU ribosomal protein S1Pchromosome I CDS1987764 1674 - 0.444444
NA VF1527 L-asparaginasechromosome I CDS1712297 1062 - 0.39548
NA VF1568 ribosomal large subunit pseudouridine synthase Fchromosome I CDS1759283 945 - 0.371429
NA VF0753 leucyl-tRNA synthetasechromosome I CDS820414 2577 - 0.422196
NA VF0253 LSU ribosomal protein L18Pchromosome I CDS261316 354 + 0.497175
NA VF0550 16S rRNA processing protein RimMchromosome I CDS599229 528 + 0.395833
NA VF0153 cleavage and polyadenylationchromosome I CDS172855 1473 + 0.418873
NA VF0307 NIFR3-like proteinchromosome I CDS316746 987 + 0.407295
NA VF0234 SSU ribosomal protein S10Pchromosome I CDS253660 312 + 0.445513
NA VF1020 tRNA pseudouridine synthase Achromosome I CDS1129252 687 + 0.382824
NA VF0613 tRNA pseudouridine synthase Cchromosome I CDS671784 780 + 0.387179
NA VF0005 LSU ribosomal protein L34Pchromosome I CDS4502 135 - 0.459259
NA VF1159 asparaginyl-tRNA synthetasechromosome I CDS1288042 1401 - 0.447537
NA VF0866 hypothetical proteinchromosome I CDS952566 675 - 0.404444
NA VF0015 glycyl-tRNA synthetase alpha chainchromosome I CDS16015 921 + 0.433225
NA VF1205 conserved hypothetical proteinchromosome I CDS1345961 708 - 0.357345
NA VF1382 ribosomal-protein-alanine acetyltransferasechromosome I CDS1532558 531 - 0.344633
NA VF0260 SSU ribosomal protein S11Pchromosome I CDS264834 390 + 0.497436
NA VF2311 SSU ribosomal protein S18Pchromosome I CDS2604786 228 - 0.447368
NA VF0761 GTP-binding proteinchromosome I CDS832984 564 - 0.420213
NA VF0128 LSU ribosomal protein L33Pchromosome I CDS146129 168 + 0.392857
NA VF0245 SSU ribosomal protein S17Pchromosome I CDS258343 255 + 0.411765
NA VF0235 LSU ribosomal protein L3Pchromosome I CDS253984 111 + 0.459459
NA VF0103 tRNA (guanosine-2'-O-)-methyltransferasechromosome I CDS121933 690 - 0.42029
NA VFA0374 ATP-dependent RNA helicasechromosome II CDS422266 1305 + 0.384674
NA VF1696 tRNA pseudouridine synthase Achromosome I CDS1911536 789 - 0.409379
NA VF2543 peptide deformylasechromosome I CDS2871883 513 + 0.39961
NA VF0549 SSU ribosomal protein S16Pchromosome I CDS598953 249 + 0.461847
NA VF0255 LSU ribosomal protein L30Pchromosome I CDS262190 180 + 0.405556
NA VF0488 tRNA pseudouridine synthase Bchromosome I CDS524858 951 + 0.423764
NA VFA0384 ATP-dependent RNA helicasechromosome II CDS434633 1905 + 0.450919
NA VF1035 Sua5/YciO/YrdC/YwlC family proteinchromosome I CDS1142514 621 + 0.392915
NA VF0248 LSU ribosomal protein L24Pchromosome I CDS259146 315 + 0.396825
NA VF1744 LSU ribosomal protein L32Pchromosome I CDS1970180 171 - 0.479532
NA VF0278 LSU ribosomal protein L21Pchromosome I CDS285806 312 + 0.451923
NA VF0249 LSU ribosomal protein L5Pchromosome I CDS259475 537 + 0.461825
NA VF0016 glycyl-tRNA synthetase beta chainchromosome I CDS16938 2067 + 0.411224
NA VF1970 S-adenosylmethionine:tRNAribosyltransferase-isom erasechromosome I CDS2207501 1053 - 0.413105
NA VFA0365 translation initiation inhibitorchromosome II CDS411153 348 + 0.393678
NA VF1887 glutamyl-tRNA synthetasechromosome I CDS2125827 1425 - 0.412632
NA VF2389 Nif3 family proteinchromosome I CDS2685841 216 + 0.435185
NA VF1806 ribosomal protein L3P methyltransferasechromosome I CDS2041882 933 - 0.42015
NA VF2388 ribosomal protein L11 methyltransferasechromosome I CDS2684852 885 + 0.435028
NA VF0944 glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase)chromosome I CDS1039245 966 - 0.413043
NA VF0411 valyl-tRNA synthetasechromosome I CDS439771 2874 - 0.43563
NA VF2312 SSU ribosomal protein S6Pchromosome I CDS2605342 381 - 0.461942
NA VF1214 threonyl-tRNA synthetasechromosome I CDS1352575 996 + 0.431727
NA VF0127 LSU ribosomal protein L28Pchromosome I CDS145878 237 + 0.459916
NA VF0478 23S rRNA Um2552 2'-O-methyltransferasechromosome I CDS513805 630 + 0.4
NA VF2137 16S rRNA m(2)G 1207 methyltransferasechromosome I CDS2391681 1020 + 0.365686
NA VF1038 ribosomal large subunit pseudouridine synthase Bchromosome I CDS1147183 1065 + 0.429108
NA VF0564 ribosomal large subunit pseudouridine synthase Dchromosome I CDS612629 975 + 0.424615
NA VF0536 alanyl-tRNA synthetasechromosome I CDS579097 2580 + 0.405426
NA VF0630 histidyl-tRNA synthetasechromosome I CDS686634 1269 + 0.411348
NA VF2436 tRNA (Uracil-5-)-methyltransferasechromosome I CDS2743976 1107 + 0.365854
NA VF2423 protein translation elongation factor Tu (EF-TU)chromosome I CDS2715407 1185 - 0.455696
NA VF0231 SSU ribosomal protein S7Pchromosome I CDS249256 471 + 0.456476
NA VF1707 ribonuclease Dchromosome I CDS1925819 1122 - 0.384135
NA VF1144 putative ATP-dependent RNA helicase RhlEchromosome I CDS1270231 1296 + 0.405093
NA VF1486 hypothetical proteinchromosome I CDS1647130 1164 - 0.396048
NA VFA1128 hypothetical proteinchromosome II CDS1267641 273 + 0.340659
NA VF0467 isoleucyl-tRNA synthetasechromosome I CDS498840 2859 + 0.426023
NA VF0254 SSU ribosomal protein S5Pchromosome I CDS261684 501 + 0.451098
NA VFA0573 protein translation initiation factor 1 (IF-1) (or SUI1)chromosome II CDS658406 312 + 0.403846
NA VFA0219 tungstate-binding protein precursorchromosome II CDS243470 786 + 0.33715
NA VF0529 protein translation elongation factor G (EF-G)chromosome I CDS566655 2088 + 0.434387
NA VF1492 tRNA-(MS[2]IO[6]A)-hydroxylasechromosome I CDS1654439 759 - 0.380764
NA VF1218 LSU ribosomal protein L20Pchromosome I CDS1355401 354 + 0.443503
NA VF1130 23S rRNA methyltransferasechromosome I CDS1255257 459 - 0.433551
NA VF1217 LSU ribosomal protein L35Pchromosome I CDS1355165 195 + 0.410256
NA VF2476 heat shock protein 15chromosome I CDS2781012 402 + 0.427861
NA VF0444 ATP-dependent RNA helicase SrmBchromosome I CDS473441 1242 - 0.42351
NA VF0111 ribonuclease PHchromosome I CDS129553 717 + 0.46583
NA VF1439 putative ATP-dependent RNA helicase RhlEchromosome I CDS1593953 1266 - 0.402054
NA VF2286 tryptophanyl-tRNA synthetasechromosome I CDS2575608 1017 - 0.428712
NA VF0562 ribosome-associated factor Ychromosome I CDS610950 354 - 0.426554
NA VF2167 poly(A) polymerasechromosome I CDS2443110 582 + 0.420962
NA VF2273 LSU ribosomal protein L31Pchromosome I CDS2561965 219 - 0.438356
NA VF0768 bacterial peptide chain release factor 1 (RF-1)chromosome I CDS838808 1089 + 0.432507
NA VF0242 SSU ribosomal protein S3Pchromosome I CDS257032 699 + 0.479256
NA VF0650 tRNA-specific adenosine deaminasechromosome I CDS710874 516 + 0.422481
NA VF0880 ribosomal small subunit pseudouridine synthase Achromosome I CDS966134 705 + 0.398582
NA VF0615 RRNA methylase, SpoU familychromosome I CDS673640 726 + 0.402204
NA VF0489 SSU ribosomal protein S15Pchromosome I CDS525972 270 + 0.448148
NA VF0404 translation initiation inhibitorchromosome I CDS433649 390 - 0.412821
NA VF2221 SSU ribosomal protein S9Pchromosome I CDS2499419 393 - 0.470738
NA VF2416 LSU ribosomal protein L10Pchromosome I CDS2712258 384 - 0.463542
NA VF0949 aspartyl-tRNA synthetasechromosome I CDS1044807 1776 + 0.429054
NA VF1963 methionine aminopeptidasechromosome I CDS2198761 828 + 0.380435
NA VF0232 protein translation elongation factor G (EF-G)chromosome I CDS249858 2097 + 0.440629
NA VF0763 peptidyl-tRNA hydrolasechromosome I CDS834096 471 - 0.40552
NA VF2545 16S rRNA m(5)C 967 methyltransferasechromosome I CDS2873465 1281 + 0.422326
NA VF0490 polyribonucleotide nucleotidyltransferasechromosome I CDS526580 2130 + 0.435211
NA VF2313 23S rRNA Gm2251 methyltransferasechromosome I CDS2605977 747 - 0.421687
NA VF1251 conserved hypothetical proteinchromosome I CDS1394686 1005 + 0.325373
NA VFA0484 hypothetical proteinchromosome II CDS557486 1731 - 0.387637
NA VF0238 LSU ribosomal protein L23Pchromosome I CDS255229 303 + 0.386139
NA VF2536 SUA5 proteinchromosome I CDS2866126 558 - 0.394265
NA VF1215 threonyl-tRNA synthetasechromosome I CDS1353567 936 + 0.415598
NA VF0658 ribosomal protein S6 modification proteinchromosome I CDS723207 906 - 0.416115