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2024-05-08 04:03:18

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Erwinia carotovora subsp. atroseptica SCRI1043, SCRI1043

Number of genes found: 186

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Erwinia carotovora subsp. atroseptica SCRI1043, SCRI1043
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA ECA3477 putative translation initiation factor EIF-2Bchromosome CDS3898447 1029 + 0.596696
NA ECA4443 50S ribosomal protein L34chromosome CDS4985770 141 + 0.51773
NA ECA4364 putative membrane proteinchromosome CDS4888643 1647 - 0.522769
NA ECA4315 putative RNA-methyltransferasechromosome CDS4834403 465 - 0.529032
NA ECA3239 putative RNA methyltransferasechromosome CDS3622058 726 - 0.528926
NA ECA0696 conserved hypothetical proteinchromosome CDS767061 294 - 0.462585
NA ECA3892 putative RNA methyltransferasechromosome CDS4357649 687 - 0.544396
NA ECA0063 conserved hypothetical proteinchromosome CDS79098 288 - 0.434028
NA ECA1958 putative translation initiaiton factorchromosome CDS2217316 330 + 0.518182
NA ECA3621 probable tRNA/rRNA methyltransferasechromosome CDS4067902 735 - 0.553742
NA ECA2183 conserved hypothetical protein; putative ATP/GTP-binding proteinchromosome CDS2486231 1092 - 0.504579
NA ECA3144 probable formyl transferasechromosome CDS3508744 2022 - 0.553412
NA ECA1319 conserved hypothetical proteinchromosome CDS1492350 1425 - 0.509474
NA ECA2141 probable amidasechromosome CDS2440593 1803 + 0.586245
NA ECA2376 putative endoribonucleasechromosome CDS2687612 345 + 0.53913
NA ECA3349 putative sigma(54) modulation proteinchromosome CDS3765670 342 + 0.45614
NA ECA0931 putative avirulence proteinchromosome CDS1041218 1869 - 0.53023
NA ECA2908 putative plasmid replication proteinchromosome CDS3253486 765 - 0.359477
NA ECA0380 putative endoribonucleasechromosome CDS431494 387 - 0.550388
NA ECA0326 putative plasmid stability proteinchromosome CDS374452 288 + 0.423611
NA ECA3260 putative cytidine and deoxycytidylate deaminasechromosome CDS3651263 525 - 0.569524
NA ECA0287 putative sigma(54) modulation proteinchromosome CDS335696 288 - 0.434028
NA ECA2672 putative RNA methyltransferasechromosome CDS3007088 1128 - 0.547872
NA ECA3318 putative glutamyl-tRNA synthetasechromosome CDS3729711 969 + 0.520124
NA ECA1651 hypothetical proteinchromosome CDS1901913 255 - 0.427451
NA ECA2170 conserved hypothetical proteinchromosome CDS2474317 1146 - 0.539267
NA ECA1645 conserved hypothetical proteinchromosome CDS1897721 765 + 0.341176
NA ECA2291 putative RNA pseudouridylate synthasechromosome CDS2596643 885 - 0.548023
NA ECA2732 putative elongation factorchromosome CDS3072423 573 + 0.499127
NA ECA2440 putative RNA pseudouridylate synthasechromosome CDS2755854 657 + 0.490107
NA ECA0674 putative phage-related proteinchromosome CDS747553 270 - 0.511111
NA ECA3516 putative tRNA/rRNA methyltransferasechromosome CDS3936945 1152 - 0.544271
NA ECA2501 hypothetical proteinchromosome CDS2819423 696 - 0.45546
NA ECA3191 putative acetyltransferasechromosome CDS3571239 552 + 0.556159
NA ECA2799 putative dihydrouridine synthasechromosome CDS3139631 933 - 0.558414
NA ECA0256 putative dihydrourdine synthasechromosome CDS300298 966 - 0.524845
NA ECA3012 probable acetyltransferasechromosome CDS3365704 576 + 0.519097
NA ECA3499 probable amidasechromosome CDS3918901 1491 + 0.579477
NA ECA0654 conserved hypothetical proteinchromosome CDS727975 1140 + 0.535965
NA ECA3070 conserved hypothetical proteinchromosome CDS3427616 933 - 0.516613
NA ECA2292 conserved hypothetical proteinchromosome CDS2597688 621 - 0.484702
NA ECA1025 putative RNA pseudouridylate synthasechromosome CDS1147729 786 + 0.53944
NA ECA3660 putative dihydrouridine synthasechromosome CDS4109655 1023 + 0.538612
NA ECA2708 conserved hypothetical proteinchromosome CDS3042056 1329 + 0.520692
alaS ECA3367 alanyl-tRNA synthetasechromosome CDS3782345 2628 - 0.517123
ansA ECA2340 L-asparaginase Ichromosome CDS2651794 1020 + 0.512745
ansB1 ECA1102 L-asparaginase precursorchromosome CDS1248508 1041 + 0.51585
ansB2 ECA4126 L-asparaginase IIchromosome CDS4603858 1050 + 0.545714
argS ECA2520 arginyl-tRNA synthetasechromosome CDS2835515 1731 + 0.515309
asnS ECA2541 asparaginyl-tRNA synthetasechromosome CDS2864092 1401 + 0.511777
aspS ECA2496 aspartyl-tRNA synthetasechromosome CDS2811956 1800 - 0.538889
cafA ECA0271 ribonuclease Gchromosome CDS316547 1470 + 0.521769
cca ECA3588 tRNA nucleotidyltransferasechromosome CDS4034399 1245 + 0.556626
crl ECA3464 curlin genes transcriptional activatorchromosome CDS3883953 375 - 0.493333
cysS ECA3151 cysteinyl-RNA synthetasechromosome CDS3517663 1386 - 0.518759
dbpA ECA3092 ATP-independent RNA helicasechromosome CDS3451774 1383 - 0.53073
deaD ECA0718 ATP-independent RNA helicasechromosome CDS787369 1914 + 0.543365
def ECA3999 peptide deformylasechromosome CDS4482450 510 + 0.482353
dtd ECA0032 D-tyrosyl-tRNA(Tyr) deacylasechromosome CDS39698 438 + 0.515982
efp ECA3976 elongation factor Pchromosome CDS4447619 567 - 0.499118
fmt ECA4000 methionyl-tRNA formyltransferasechromosome CDS4482986 948 + 0.511603
frr ECA1034 ribosome recycling factorchromosome CDS1157130 558 + 0.5
fusA ECA4036 elongation factor Gchromosome CDS4503842 2115 - 0.491253
glnS ECA1328 glutaminyl-tRNA synthetasechromosome CDS1504627 1659 + 0.503918
gltX ECA3291 glutamyl-tRNA synthetasechromosome CDS3696813 1416 - 0.523305
glyQ ECA0084 glycine-tRNA synthetase, alpha subunitchromosome CDS98527 915 + 0.528962
glyS ECA0085 glycine-tRNA synthetase, beta subunitchromosome CDS99451 2070 + 0.546377
gshB ECA3924 glutathione synthetasechromosome CDS4392301 960 + 0.5375
hemK ECA2191 protein methyltransferasechromosome CDS2493971 846 + 0.561466
hisS ECA3219 histidyl-tRNA synthetasechromosome CDS3601955 1275 - 0.533333
hslR ECA4104 heat shock proteinchromosome CDS4573911 411 + 0.545012
ileS ECA3876 isoleucyl-tRNA synthetasechromosome CDS4335368 2814 - 0.536603
infA ECA2653 translation initiation factor IF-1chromosome CDS2988043 219 + 0.488584
infB ECA0712 translation initiation factor IF-2chromosome CDS779306 2703 + 0.512394
infC ECA2421 translation initiation factor IF-3chromosome CDS2733240 543 - 0.471455
kptA ECA0395 RNA 2'-phosphotransferasechromosome CDS452395 543 - 0.368324
ksgA ECA3859 dimethyladenosine transferasechromosome CDS4319027 819 + 0.505495
leuS ECA1309 leucyl-tRNA synthetasechromosome CDS1480684 2583 - 0.53736
ligT ECA3315 2'-5' RNA ligasechromosome CDS3727604 531 + 0.555556
lysS ECA0774 lysyl tRNA synthetasechromosome CDS844582 1518 + 0.536232
map ECA1030 methionine aminopeptidasechromosome CDS1153258 795 - 0.514465
miaA ECA3935 tRNA delta(2)-isopentenylpyrophosphate transferasechromosome CDS4402952 942 - 0.53397
osmE ECA2411 osmotically inducible lipoprotein Echromosome CDS2723691 330 - 0.475758
pcnB ECA3319 poly(A) polymerasechromosome CDS3730782 1449 + 0.52657
pheS ECA2418 phenylalanyl-tRNA synthetase alpha chainchromosome CDS2731251 984 - 0.515244
pnp ECA0716 polyribonucleotide nucleotidyltransferasechromosome CDS784066 2121 + 0.522867
poxA ECA3968 putative lysyl-tRNA synthetasechromosome CDS4441333 978 - 0.543967
prfA ECA2190 peptide chain release factor 1chromosome CDS2492889 1083 + 0.545706
prfB ECA0773 putative peptide chain release factor 2chromosome CDS843475 1099 + 0.508644
prfC ECA0468 peptide chain release factor 3chromosome CDS533382 1590 + 0.520126
prfH ECA3617 putative peptide chain release factorchromosome CDS4065493 624 + 0.557692
prmA ECA0258 ribosomal protein L11 methyltransferasechromosome CDS302533 888 - 0.576577
proS ECA3529 prolyl-tRNA synthetasechromosome CDS3956293 1719 + 0.511344
pth ECA2184 peptidyl-tRNA hydrolasechromosome CDS2487452 588 - 0.494898
queA ECA1119 S-adenosylmethionine:tRNAribosyltransferase-isom erasechromosome CDS1271755 1068 + 0.544944
rbfA ECA0713 ribosome-binding factor Achromosome CDS782083 399 + 0.478697
rfbF ECA1422 glucose-1-phosphate cytidylyltransferasechromosome CDS1614552 774 + 0.432817
rhlB ECA4213 putative ATP-dependent RNA helicasechromosome CDS4709598 1293 + 0.524362
rhlE ECA2805 putative ATP-dependent RNA helicasechromosome CDS3145672 1452 - 0.568182
rimJ ECA2524 ribosomal-protein-alanine acetyltransferasechromosome CDS2840649 585 - 0.511111
rimK ECA2679 ribosomal protein S6 modification proteinchromosome CDS3014433 912 - 0.528509
rimM ECA3358 16S rRNA processing proteinchromosome CDS3773866 549 - 0.468124
rluA ECA3854 ribosomal large subunit pseudouridine synthase Achromosome CDS4312461 654 + 0.556575
rluC ECA1790 ribosomal large subunit pseudouridine synthase Cchromosome CDS2038594 957 + 0.505747
rluD ECA3347 ribosomal large subunit pseudouridine synthase Dchromosome CDS3763501 978 - 0.50818
rnd ECA2371 ribonuclease Dchromosome CDS2680470 1125 - 0.526222
rne ECA1789 ribonuclease Echromosome CDS2034716 3285 - 0.518113
rnpA ECA4444 ribonuclease P protein componentchromosome CDS4985929 360 + 0.516667
rph ECA0140 ribonuclease PHchromosome CDS162282 717 + 0.571827
rplA ECA0220 50S ribosomal protein L1chromosome CDS253304 705 + 0.486525
rplB ECA4028 50S ribosomal subunit protein L2chromosome CDS4498610 822 - 0.514599
rplC ECA4031 50S ribosomal subunit protein L3chromosome CDS4500364 630 - 0.490476
rplD ECA4030 50S ribosomal subunit protein L4chromosome CDS4499748 606 - 0.506601
rplE ECA4019 50S ribosomal subunit protein L5chromosome CDS4494967 540 - 0.492593
rplF ECA4016 50S ribosomal subunit protein L6chromosome CDS4493675 534 - 0.501873
rplI ECA3610 50S ribosomal protein L9chromosome CDS4059527 453 - 0.509934
rplJ ECA0221 50S ribosomal protein L10chromosome CDS254326 498 + 0.522088
rplK ECA0219 50S ribosomal protein L11chromosome CDS252872 429 + 0.496504
rplL ECA0222 50S ribosomal protein L7/L12chromosome CDS254890 366 + 0.445355
rplM ECA0306 50S ribosomal subunit protein L13chromosome CDS352201 429 + 0.494172
rplN ECA4021 50S ribosomal subunit protein L14chromosome CDS4495846 372 - 0.486559
rplO ECA4012 50S ribosomal subunit protein L15chromosome CDS4492173 435 - 0.489655
rplP ECA4024 50S ribosomal subunit protein L16chromosome CDS4496826 411 - 0.515815
rplQ ECA4005 50S ribosomal protein L17chromosome CDS4487676 393 - 0.521628
rplR ECA4015 50S ribosomal subunit protein L18chromosome CDS4493312 354 - 0.519774
rplS ECA3356 50S ribosomal protein L19chromosome CDS3772662 348 - 0.482759
rplT ECA2419 50S ribosomal protein L20chromosome CDS2732547 357 - 0.490196
rplU ECA0690 50S ribosomal protein L21chromosome CDS761608 312 + 0.477564
rplV ECA4026 50S ribosomal subunit protein L22chromosome CDS4497968 333 - 0.495495
rplW ECA4029 50S ribosomal subunit protein L23chromosome CDS4499449 303 - 0.475248
rplX ECA4020 50S ribosomal subunit protein L24chromosome CDS4495521 315 - 0.431746
rplY ECA2745 50S ribosomal protein L25chromosome CDS3086967 285 + 0.463158
rpmA ECA0691 50S ribosomal subunit protein L27chromosome CDS761939 258 + 0.465116
rpmB ECA0146 50S ribosomal protein L28chromosome CDS167881 237 + 0.514768
rpmC ECA4023 50S ribosomal subunit protein L29chromosome CDS4496635 192 - 0.484375
rpmD ECA4013 50S ribosomal subunit protein L30chromosome CDS4492611 180 - 0.488889
rpmE ECA4257 50S ribosomal protein L31chromosome CDS4770469 216 - 0.481481
rpmE2 ECA1168 putative 50S ribosomal protein L31 (second copy)chromosome CDS1322445 249 - 0.473896
rpmF ECA1793 50S ribosomal protein L32chromosome CDS2040877 171 + 0.491228
rpmG ECA0147 50S ribosomal protein L33chromosome CDS168129 168 + 0.410714
rpmI ECA2420 50S ribosomal subunit protein L35chromosome CDS2732947 198 - 0.474747
rpmJ ECA4010 50S ribosomal protein L36chromosome CDS4490684 117 - 0.452991
rpmJ2 ECA1167 putative 50S ribosomal protein L36 (second copy)chromosome CDS1322284 144 - 0.4375
rpsA ECA2591 30S ribosomal protein S1chromosome CDS2924025 1674 - 0.490442
rpsB ECA1031 30S ribosomal protein S2chromosome CDS1154397 726 + 0.491736
rpsC ECA4025 30S ribosomal subunit protein S3chromosome CDS4497249 702 - 0.488604
rpsD ECA4007 30S ribosomal subunit protein S4chromosome CDS4489124 621 - 0.489533
rpsE ECA4014 30S ribosomal subunit protein S5chromosome CDS4492797 501 - 0.520958
rpsF ECA3613 30S ribosomal protein S6chromosome CDS4060579 393 - 0.529262
rpsG ECA4037 30S ribosomal subunit protein S7chromosome CDS4506053 471 - 0.490446
rpsH ECA4017 30S ribosomal subunit protein S8chromosome CDS4494222 393 - 0.465649
rpsI ECA0307 30S ribosomal protein S9chromosome CDS352645 393 + 0.526718
rpsJ ECA4032 30S ribosomal subunit protein S10chromosome CDS4501026 312 - 0.512821
rpsK ECA4008 30S ribosomal subunit protein S11chromosome CDS4489775 390 - 0.512821
rpsL ECA4038 30S ribosomal subunit protein S12chromosome CDS4506620 375 - 0.52
rpsM ECA4009 30S ribosomal subunit protein S13chromosome CDS4490181 357 - 0.484594
rpsN ECA4018 30S ribosomal subunit protein S14chromosome CDS4494648 306 - 0.529412
rpsO ECA0715 30S ribosomal protein S15chromosome CDS783547 270 + 0.496296
rpsP ECA3359 30S ribosomal protein S16chromosome CDS3774433 249 - 0.506024
rpsQ ECA4022 30S ribosomal subunit protein S17chromosome CDS4496381 255 - 0.447059
rpsR ECA3611 30S ribosomal protein S18chromosome CDS4060021 228 - 0.491228
rpsS ECA4027 30S ribosomal subunit protein S19chromosome CDS4498315 279 - 0.501792
rpsT ECA3878 30S ribosomal protein S20chromosome CDS4339580 264 + 0.462121
rpsU ECA0682 30S ribosomal subunit protein S21chromosome CDS755185 216 - 0.49537
rrmJ ECA0697 ribosomal RNA large subunit methyltransferasechromosome CDS767499 630 + 0.48254
rsmC ECA0735 ribosomal RNA small subunit methyltransferase Cchromosome CDS803587 1047 + 0.551098
rsuA ECA2742 ribosomal small subunit pseudouridine synthase a; ribosomal small subunit pseudouridine synthasechromosome CDS3083724 696 - 0.494253
rumA ECA3570 23S rRNA (uracil-5-)-methyltransferasechromosome CDS4007131 1353 - 0.55728
serS ECA2644 seryl-tRNA synthetasechromosome CDS2974318 1296 - 0.517747
smpA ECA0839 putative outer membrane lipopotein (small protein A)chromosome CDS928951 336 - 0.535714
srmB ECA3287 ATP-dependent RNA helicasechromosome CDS3692383 1326 + 0.527149
sun ECA4001 Sun proteinchromosome CDS4484001 1290 + 0.493023
tgt ECA1120 queuine tRNA-ribosyltransferasechromosome CDS1272920 1146 + 0.506981
thrS ECA2422 threonyl-tRNA synthetasechromosome CDS2733785 1929 - 0.495594
trmA ECA4239 tRNA (uracil-5)-methyltransferasechromosome CDS4750499 1104 + 0.526268
trmD ECA3357 tRNA(guanine-N1)methyltransferasechromosome CDS3773072 756 - 0.517196
trmH ECA0037 putative tRNA (guanosine-2'-O)-methyltransferasechromosome CDS47188 693 - 0.536797
trmU ECA2442 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS2757088 1107 + 0.526649
trpS ECA4087 tryptophanyl-tRNA synthetasechromosome CDS4556779 1005 - 0.519403
truA ECA3058 tRNA pseudouridine synthase Achromosome CDS3414618 852 - 0.555164
truB ECA0714 tRNA pseudouridine synthase Bchromosome CDS782481 945 + 0.522751
tsf ECA1032 elongation factor Tschromosome CDS1155257 852 + 0.487089
tufA ECA0216 elongation factor Tuchromosome CDS250357 1185 + 0.5173
tufB ECA4035 elongation factor Tuchromosome CDS4502588 1185 - 0.5173
tyrS ECA1936 tyrosyl-tRNA synthetasechromosome CDS2192856 1278 + 0.519562
valS ECA0402 valyl-tRNA synthetasechromosome CDS458055 2856 - 0.541667