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2024-05-05 22:19:05

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Yersinia pseudotuberculosis IP 32953, IP 32953

Number of genes found: 192

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Yersinia pseudotuberculosis IP 32953, IP 32953
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA YPTB1366 putative RNA methyltransferasechromosome CDS1627424 1131 + 0.523431
NA YPTB0433 putative methylasechromosome CDS518924 741 + 0.539811
NA YPTB1988 conserved hypothetical proteinchromosome CDS2343653 906 - 0.399558
NA YPTB0067 putative methyltransferasechromosome CDS78059 489 - 0.490798
NA YPTB3427 putative translational inhibitor proteinchromosome CDS4069993 405 - 0.511111
NA YPTB1216 conserved hypothetical proteinchromosome CDS1450275 945 + 0.485714
NA YPTB3421 hypothetical proteinchromosome CDS4063471 471 - 0.422505
NA YPTB0351 conserved hypothetical proteinchromosome CDS416548 1062 - 0.490584
NA YPTB1832 hypothetical proteinchromosome CDS2182663 1668 + 0.465827
NA YPTB3126 Possible bacteriophage proteinchromosome CDS3687212 261 - 0.394636
NA YPTB3148 Conserved hypothetical proteinchromosome CDS3706022 456 + 0.506579
NA YPTB2006 putative protoporphyrinogen oxidasechromosome CDS2362192 831 + 0.533093
NA YPTB2150 translation initiation factor SUI1 family proteinchromosome CDS2528772 327 + 0.477064
NA YPTB2861 putative SpoU-family rRNA methylasechromosome CDS3386322 774 - 0.502584
NA YPTB0540 hypothetical proteinchromosome CDS639266 537 + 0.409683
NA YPTB2134 conserved hypothetical proteinchromosome CDS2509758 621 + 0.462158
NA YPTB0862 probable amidasechromosome CDS1038943 1398 - 0.547926
NA YPTB3576 conserved hypothetical proteinchromosome CDS4257310 966 + 0.518634
NA YPTB1588 conserved hypothetical proteinchromosome CDS1916426 501 - 0.500998
NA YPTB0372 conserved hypothetical proteinchromosome CDS444663 1038 + 0.521195
NA YPTB1989 putative exported proteinchromosome CDS2345338 1074 - 0.485102
NA YPTB1786 hypothetical proteinchromosome CDS2137092 507 - 0.47929
NA YPTB3661 conserved hypothetical proteinchromosome CDS4374873 573 - 0.467714
NA YPTB2053 conserved hypothetical proteinchromosome CDS2418938 345 - 0.486957
NA YPTB3667 conserved hypothetical proteinchromosome CDS4379306 1290 + 0.45969
NA YPTB1058 conserved hypothetical proteinchromosome CDS1265226 873 + 0.495991
NA YPTB3533 Conserved hypothetical proteinchromosome CDS4199134 387 + 0.485788
NA YPTB3009 conserved hypothetical proteinchromosome CDS3548823 774 - 0.485788
NA YPTB0981 putative ribosomal protein L36chromosome CDS1178247 144 - 0.479167
NA YPTB2980 conserved hypothetical proteinchromosome CDS3518392 441 - 0.487528
NA YPTB2881 putative zinc-binding proteinchromosome CDS3413275 564 - 0.537234
NA YPTB0472 conserved hypothetical proteinchromosome CDS556872 294 - 0.438776
NA YPTB0028 conserved hypothetical proteinchromosome CDS38201 438 + 0.488584
NA YPTB2633 conserved hypothetical proteinchromosome CDS3110596 1002 - 0.482036
NA YPTB0154 probable phage antitermination protein Qchromosome CDS183509 372 + 0.38172
NA YPTB1138 conserved hypothetical small protein A precursorchromosome CDS1361444 351 - 0.452991
NA YPTB1953 putative acetyltransferasechromosome CDS2298444 900 + 0.44
NA YPTB3470 putative methyltransferasechromosome CDS4132209 1188 - 0.495791
NA YPTB1826 bacteriophage hypothetical proteinchromosome CDS2172947 375 + 0.512
NA YPTB0348 conserved hypothetical proteinchromosome CDS413523 1080 - 0.525926
NA YPTB1316 putative elongation factor Pchromosome CDS1568639 573 - 0.462478
NA YPTB3164 Peptide chain release factor 2chromosome CDS3721212 1099 - 0.471338
NA YPTB3428 putative translational inhibitor proteinchromosome CDS4070682 381 - 0.356955
NA YPTB2135 putative RNA pseudouridylate synthase-family proteinchromosome CDS2510708 1035 + 0.510145
alaS YPTB0825 alanyl-tRNA synthetasechromosome CDS990643 2628 + 0.501522
alcB YPTB1543 putative siderophore biosynthetic enzymechromosome CDS1857537 579 + 0.483592
ampM YPTB3004 methionine aminopeptidasechromosome CDS3543212 792 + 0.486111
ansA YPTB2087 L-asparaginase Ichromosome CDS2457340 1017 - 0.476893
ansB YPTB1411 putative L-asparaginase II precursorchromosome CDS1687428 1038 + 0.471098
argS YPTB2029 arginyl-tRNA synthetasechromosome CDS2392130 1731 - 0.501444
asnS YPTB1436 asparaginyl-tRNA synthetasechromosome CDS1723497 1401 - 0.499643
aspS YPTB2036 aspartyl-tRNA synthetasechromosome CDS2400515 1797 + 0.510851
cafA YPTB3561 ribonuclease Gchromosome CDS4239530 1470 - 0.476871
cca YPTB3411 tRNA nucleotidyltransferasechromosome CDS4052402 1239 + 0.534302
cysS YPTB1035 cysteinyl-tRNA synthetasechromosome CDS1242263 1386 + 0.497114
dbpA YPTB1652 ATP-dependent RNA helicasechromosome CDS2004668 1383 + 0.501085
ddhA YPTB0999 glucose-1-phosphate cytidylyltransferasechromosome CDS1199878 786 + 0.436387
deaD YPTB0486 cold-shock dead-box protein Achromosome CDS573404 1995 + 0.535338
def YPTB3665 polypeptide deformylasechromosome CDS4377728 513 + 0.452242
efp YPTB0408 elongation factor Pchromosome CDS487175 567 + 0.485009
eif YPTB0877 putative translation initiation factor EIF-2B, GDP-GTP exchange factor (alpha subunit)chromosome CDS1051684 1041 - 0.554275
fmt YPTB3666 methionyl-tRNA formyltransferasechromosome CDS4378265 948 + 0.470464
frr YPTB3000 ribosome recycling factorchromosome CDS3539439 558 - 0.476703
ftsJ YPTB0473 ribosomal RNA large subunit methyltransferase Jchromosome CDS557312 630 + 0.457143
fusA YPTB3703 elongation factor Gchromosome CDS4400067 2109 - 0.481271
glnS YPTB1121 glutaminyl-tRNA synthetasechromosome CDS1344738 1668 + 0.496403
gltX YPTB2707 glutamyl-tRNA synthetasechromosome CDS3199412 1416 + 0.490819
glyQ YPTB3915 glycyl-tRNA synthetase alpha subunitchromosome CDS4672581 915 + 0.528962
glyS YPTB3916 glycyl-tRNA synthetase beta subunitchromosome CDS4673505 2070 + 0.520773
gshB YPTB3207 Glutathione synthetasechromosome CDS3773054 960 + 0.491667
hisS YPTB2840 histidyl-tRNA synthetasechromosome CDS3355005 1275 - 0.507451
holE YPTB1658 DNA polymerase III, theta subunitchromosome CDS2011422 231 - 0.441558
hslR YPTB3760 heat shock protein 15chromosome CDS4462529 408 + 0.522059
ileS YPTB0617 isoleucine tRNA synthetasechromosome CDS732045 2817 + 0.500887
infA YPTB1395 translation initiation factor IF-1chromosome CDS1662279 219 - 0.497717
infB YPTB0480 translation initiation factor IF2-2chromosome CDS565311 2679 + 0.4972
infC YPTB2341 translation initiation factor IF-3chromosome CDS2762651 552 - 0.476449
iucB YPTB3264 putative siderophore biosynthesis protein IucBchromosome CDS3845368 951 + 0.562566
ksgA YPTB0633 S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase; kasugamycin resistancechromosome CDS749445 819 - 0.478632
leuS YPTB1103 leucyl-tRNA synthetasechromosome CDS1319842 2583 - 0.510647
ligT YPTB0736 putative 2'-5' RNA ligasechromosome CDS881937 576 - 0.567708
lysS YPTB3163 lysyl-tRNA synthetasechromosome CDS3719685 1518 - 0.479578
map YPTB0794 methionine aminopeptidasechromosome CDS953280 786 - 0.510178
miaA YPTB0424 tRNA delta(2)-isopentenylpyrophosphate transferasechromosome CDS508187 942 + 0.510616
miaB YPTB1113 putative tRNA-thiotransferasechromosome CDS1331702 1425 - 0.484912
pcnB YPTB0732 poly(A) polymerase Ichromosome CDS877611 1314 - 0.519026
pelY YPTB3834 periplasmic pectate lyase precursorchromosome CDS4576508 1719 - 0.497964
pheS YPTB2337 phenylalanyl-tRNA synthetase alpha chainchromosome CDS2760481 984 - 0.473577
pmrI YPTB2328 probable formyl transferasechromosome CDS2749875 2004 - 0.456587
pnp YPTB0484 polyribonucleotide nucleotidyltransferasechromosome CDS570094 2115 + 0.499764
poxA YPTB0414 putative lysyl-tRNA synthetasechromosome CDS492257 978 + 0.493865
prfA YPTB2005 peptide chain release factor RF-1chromosome CDS2361110 1083 + 0.515235
prfC YPTB0575 peptide chain release factor RF-3; possible GTP-binding factorchromosome CDS677036 1590 + 0.495597
prmA YPTB3575 ribosomal protein L11 methyltransferasechromosome CDS4255807 915 + 0.53224
proS YPTB2978 prolyl-tRNA synthetasechromosome CDS3515772 1719 + 0.499709
pth YPTB1999 peptidyl-tRNA hydrolasechromosome CDS2355271 591 - 0.472081
queA YPTB0927 S-adenosylmethionine:tRNA (m6t6A37) ribosyltransferase-isomerasechromosome CDS1120581 1071 + 0.512605
rbfA YPTB0481 ribosome-binding factor Achromosome CDS568055 411 + 0.445255
rhlB YPTB0165 putative DEAD-box helicasechromosome CDS197253 1287 - 0.487956
rhlE YPTB1214 putative ATP-dependent RNA helicase rhlEchromosome CDS1447324 1356 + 0.519174
rimJ YPTB2023 ribosomal-protein-alanine acetyltransferasechromosome CDS2381013 585 + 0.483761
rimM YPTB0835 16S rRNA processing proteinchromosome CDS1002578 549 + 0.466302
rluA YPTB0638 23S rRNA pseudouridylate 746 synthasechromosome CDS756284 621 - 0.489533
rluC YPTB2478 ribosomal large subunit pseudouridine synthase Cchromosome CDS2921500 963 - 0.502596
rluD YPTB0846 pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)chromosome CDS1013823 978 + 0.48364
rmf YPTB1448 putative ribosome modulation factorchromosome CDS1741530 168 + 0.511905
rnd YPTB2058 ribonuclease Dchromosome CDS2425331 1122 + 0.481283
rne YPTB2479 ribonuclease Echromosome CDS2923037 3693 + 0.507176
rnpA YPTB3946 ribonuclease P proteinchromosome CDS4711522 360 + 0.508333
rpS10 YPTB3699 30S ribosomal protein S10chromosome CDS4397217 312 - 0.525641
rph YPTB0041 ribonuclease PHchromosome CDS55054 717 + 0.51325
rplA YPTB0280 50S ribosomal protein L1chromosome CDS333806 705 + 0.47234
rplB YPTB3695 50S ribosomal protein l2chromosome CDS4394793 825 - 0.515152
rplC YPTB3698 50S ribosomal protein L3chromosome CDS4396555 630 - 0.490476
rplD YPTB3697 50S ribosomal protein L4chromosome CDS4395933 594 - 0.50505
rplE YPTB3686 50S ribosomal protein L5chromosome CDS4391138 540 - 0.488889
rplF YPTB3683 50S ribosomal protein L6chromosome CDS4389845 534 - 0.513109
rplI YPTB0441 50S ribosomal protein L9chromosome CDS524433 453 + 0.494481
rplJ YPTB0281 50S ribosomal protein L10chromosome CDS334875 498 + 0.493976
rplK YPTB0279 50S ribosomal protein L11chromosome CDS333374 429 + 0.487179
rplL YPTB0282 50S ribosomal protein L7/L12chromosome CDS335439 369 + 0.468835
rplM YPTB3508 50S ribosomal protein L13chromosome CDS4177614 429 - 0.496504
rplN YPTB3688 50S ribosomal protein L14chromosome CDS4392017 372 - 0.502688
rplO YPTB3679 50S ribosomal protein L15chromosome CDS4388344 435 - 0.510345
rplP YPTB3691 50S ribosomal protein L16chromosome CDS4393014 411 - 0.508516
rplQ YPTB3672 50S ribosomal protein L17chromosome CDS4383849 390 - 0.54359
rplR YPTB3682 50S ribosomal protein L18chromosome CDS4389482 354 - 0.516949
rplS YPTB0837 50S ribosomal subunit protein L19chromosome CDS1003986 348 + 0.477012
rplT YPTB2339 50S ribosomal protein L20chromosome CDS2761963 357 - 0.498599
rplU YPTB0464 50S ribosomal protein L21chromosome CDS549900 312 + 0.455128
rplV YPTB3693 50S ribosomal protein L22chromosome CDS4394153 333 - 0.501502
rplW YPTB3696 50S ribosomal protein L23chromosome CDS4395634 303 - 0.485149
rplX YPTB3687 50S ribosomal protein L24chromosome CDS4391692 315 - 0.460317
rplY YPTB1299 50S ribosomal protein L25chromosome CDS1546761 285 - 0.463158
rpmA YPTB0465 50S ribosomal protein L27chromosome CDS550231 258 + 0.488372
rpmB YPTB0047 50S ribosomal protein L28chromosome CDS60215 237 + 0.506329
rpmC YPTB3690 50S ribosomal protein L29chromosome CDS4392823 192 - 0.5
rpmD YPTB3680 50S ribosomal protein L30chromosome CDS4388782 180 - 0.433333
rpmE YPTB0102 50S ribosomal protein L31chromosome CDS115920 216 + 0.490741
rpmF YPTB2475 50S ribosomal protein L32chromosome CDS2919935 168 - 0.547619
rpmG YPTB0048 50S ribosomal protein L33chromosome CDS60463 168 + 0.392857
rpmH YPTB3945 50S ribosomal protein L34chromosome CDS4711363 141 + 0.510638
rpmI YPTB2340 50S ribosomal protein L35chromosome CDS2762357 198 - 0.459596
rpmJ YPTB3677 50S ribosomal protein L36chromosome CDS4386855 117 - 0.444444
rpsA YPTB1417 30S ribosomal protein S1chromosome CDS1695842 1674 + 0.479689
rpsB YPTB3003 30S ribosomal protein S2chromosome CDS3542052 726 - 0.477961
rpsC YPTB3692 30S ribosomal protein S3chromosome CDS4393437 699 - 0.493562
rpsD YPTB3674 30S ribosomal protein S4chromosome CDS4385294 621 - 0.478261
rpsE YPTB3681 30S ribosomal protein S5chromosome CDS4388964 504 - 0.486111
rpsF YPTB0438 30S ribosomal protein S6chromosome CDS523443 393 + 0.508906
rpsG YPTB3704 30S ribosomal protein S7chromosome CDS4402269 471 - 0.47983
rpsH YPTB3684 30S ribosomal protein S8chromosome CDS4390393 393 - 0.475827
rpsI YPTB3507 30S ribosomal protein S9chromosome CDS4177207 393 - 0.493639
rpsK YPTB3675 30S ribosomal protein S11chromosome CDS4385945 390 - 0.502564
rpsM YPTB3676 30S ribosomal protein S13chromosome CDS4386351 357 - 0.504202
rpsN YPTB3685 30S ribosomal protein S14chromosome CDS4390819 306 - 0.51634
rpsP YPTB0834 30S ribosomal subunit protein S16chromosome CDS1002308 249 + 0.502008
rpsQ YPTB3689 30S ribosomal protein S17chromosome CDS4392569 255 - 0.466667
rpsR YPTB0440 30S ribosomal protein S18chromosome CDS524166 228 + 0.473684
rpsS YPTB3694 30S ribosomal protein S19chromosome CDS4394500 279 - 0.505376
rpsT YPTB0615 30S ribosomal subunit protein S20chromosome CDS730397 264 - 0.465909
rpsU YPTB3416 30S ribosomal protein S21chromosome CDS4057757 216 + 0.462963
rpsl YPTB3705 30S ribosomal protein S12chromosome CDS4402836 375 - 0.506667
rsmC YPTB0572 ribosomal RNA small subunit methyltransferase Cchromosome CDS674877 1044 - 0.519157
rspO YPTB0483 30S ribosomal protein S15chromosome CDS569561 270 + 0.485185
rsuA YPTB1301 ribosomal small subunit pseudouridine synthase Achromosome CDS1549498 708 + 0.519774
selB YPTB3932 selenocysteine-specific elongation factor EFchromosome CDS4695312 1974 + 0.555218
serS YPTB1404 seryl-tRNA synthetasechromosome CDS1676219 1293 + 0.491106
speG YPTB2797 spermidine acetyltransferasechromosome CDS3300347 546 + 0.39011
srmB YPTB2900 ATP-dependent RNA helicasechromosome CDS3431229 1326 + 0.505279
tgt YPTB0928 tRNA-guanine transglycosylasechromosome CDS1121744 1125 + 0.489778
thrS YPTB2342 threonyl-tRNA synthetasechromosome CDS2763206 1929 - 0.472784
trmA YPTB0124 tRNA (uracil-5)-methyltransferasechromosome CDS146084 1104 - 0.478261
trmD YPTB0836 tRNA (guanine-7-)-methyltransferasechromosome CDS1003165 741 + 0.522267
trmH YPTB0034 tRNA (guanosine-2'-O-)-methyltransferasechromosome CDS47023 693 - 0.496392
trmU YPTB2430 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS2872937 1116 + 0.502688
trpS YPTB3744 tryptophanyl-tRNA synthetasechromosome CDS4444434 1041 - 0.48415
truA YPTB2618 tRNA pseudouridine synthase Achromosome CDS3093823 900 - 0.505556
truB YPTB0482 tRNA pseudouridine synthase Bchromosome CDS568465 975 + 0.495385
tsf YPTB3002 elongation factor EF-Tschromosome CDS3541066 858 - 0.480186
tufA YPTB0276 elongation factor Tuchromosome CDS330818 1185 + 0.480169
tufA YPTB3702 elongation factor EF-Tuchromosome CDS4398811 1185 - 0.4827
tyrS YPTB2283 tyrosyl-tRNA synthetasechromosome CDS2694165 1275 - 0.487843
valS YPTB0529 valine tRNA synthetasechromosome CDS619419 2898 - 0.521739
yadB YPTB0733 putative glutamyl t-RNA synthetasechromosome CDS879166 996 - 0.50502
ychF YPTB1998 conserved hypothetical proteinchromosome CDS2354015 1092 - 0.496337
yfiA YPTB0844 putative sigma 54 modulation proteinchromosome CDS1012239 363 - 0.446281
yfiF YPTB0854 putative tRNA/rRNA methyltransferasechromosome CDS1030634 1173 + 0.531969
yhbH YPTB3527 putative sigma N modulation factorchromosome CDS4194930 288 + 0.378472
yjcK YPTB1890 putative similar to ribosomal-protein-alanine N-acetyltransfe...chromosome CDS2231868 558 + 0.390681
ykgM YPTB0982 putative ribosomal protein L31-like proteinchromosome CDS1178406 261 - 0.471264
ymfC YPTB2428 putative pseudouridine synthasechromosome CDS2871685 627 + 0.494418