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2024-05-06 17:17:13

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Rhodopseudomonas palustris CGA009, CGA009

Number of genes found: 190

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Rhodopseudomonas palustris CGA009, CGA009
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA RPA3591 Endoribonuclease L-PSPchromosome CDS4055350 384 + 0.684896
NA RPA2420 putative soluble lytic murein transglycosylase precursorchromosome CDS2747337 2238 - 0.66622
NA RPA4001 putative DEAD-box protein, ATP-independent RNA helicasechromosome CDS4525204 2085 + 0.701199
NA RPA4224 unknown proteinchromosome CDS4767160 285 + 0.54386
NA RPA3335 hypothetical proteinchromosome CDS3761657 342 - 0.631579
NA RPA2473 possible translation initiation inhibitorchromosome CDS2811811 474 + 0.666667
NA RPA0076 Nucleotidyl transferasechromosome CDS86608 723 - 0.672199
NA RPA1178 putative histidyl-tRNA synthetasechromosome CDS1284950 1572 - 0.637405
NA RPA1165 Pseudouridine synthase, Rsu:RNA-binding S4:Pseudouridine synthasechromosome CDS1272678 2196 + 0.705373
NA RPA3623 GCN5-related N-acetyltransferasechromosome CDS4085453 597 - 0.628141
NA RPA2246 hypothetical proteinchromosome CDS2543519 426 + 0.593897
NA RPA1077 Sua5/YciO/YrdC/YwlC protein family:SUA5 domainchromosome CDS1185153 1047 - 0.687679
NA RPA1191 putative RNA methyltransferasechromosome CDS1301742 456 - 0.598684
NA RPA0864 hypothetical proteinchromosome CDS960635 399 + 0.699248
NA RPA4354 putative GTP-binding proteinchromosome CDS4905007 1098 - 0.650273
NA RPA0803 hypothetical proteinchromosome CDS890490 1047 - 0.686724
NA RPA4372 Class I peptide chain release factor domainchromosome CDS4922941 420 - 0.669048
NA RPA2495 possible translation initiation inhibitorchromosome CDS2836393 399 - 0.609023
NA RPA0030 Bacterial Sun/eukaryotic nucleolar Nop1/Nop2chromosome CDS35820 1353 - 0.689579
NA RPA0210 Pseudouridine synthase:Pseudouridine synthase, Rluchromosome CDS233589 975 + 0.676923
NA RPA0841 putative ribosomal-protein-alanine N-acetyltransferasechromosome CDS935893 597 + 0.671692
NA RPA2974 putative 6-aminohexanoate-cyclic-dimer hydrolasechromosome CDS3367926 1431 - 0.661076
NA RPA0948 possible hypothetical RNA methyltransferasechromosome CDS1047902 1239 - 0.67958
NA RPA2345 unknown proteinchromosome CDS2657015 1011 - 0.693373
NA RPA4754 possible glutamyl-tRNA synthetasechromosome CDS5365339 924 - 0.681818
NA RPA0051 putative sigma-54 modulation proteinchromosome CDS57746 606 + 0.636964
NA RPA1734 putative amidotransferase, subunit Achromosome CDS1938948 1434 - 0.675732
NA RPA4149 Beta-lactamase-likechromosome CDS4691266 1629 + 0.658686
NA RPA2500 possible amidasechromosome CDS2840927 1278 + 0.676839
NA RPA4380 Ribonuclease T2chromosome CDS4933007 696 - 0.676724
NA RPA3670 putative ATP-dependent RNA helicasechromosome CDS4143976 1425 + 0.672281
NA RPA3440 probable amidasechromosome CDS3881385 1416 + 0.689266
NA RPA3959 putative amidasechromosome CDS4475883 1485 + 0.665993
NA RPA1404 glutamyl-tRNA(Gln) amidotransferase subunit Achromosome CDS1551670 1827 - 0.671045
NA RPA0251 MiaB-like tRNA modifying enzymechromosome CDS275262 1272 + 0.684748
NA RPA2737 unknown proteinchromosome CDS3108667 486 - 0.627572
NA RPA2270 hypothetical proteinchromosome CDS2572793 972 - 0.640947
NA RPA0160 possible acetyltransferases.chromosome CDS178325 600 + 0.656667
NA RPA1778 putative Glu-tRNA amidotransferasechromosome CDS1993022 1359 + 0.689478
NA RPA2197 cell division protein FtsJchromosome CDS2472235 714 + 0.662465
NA RPA4597 possible seryl-tRNA synthetasechromosome CDS5183551 942 - 0.660297
NA RPA3514 conserved hypothetical proteinchromosome CDS3969431 936 + 0.712607
NA RPA1188 possible poly(A) polymerasechromosome CDS1299408 1257 + 0.699284
NA RPA1700 putative amidasechromosome CDS1896682 1503 - 0.695941
NA RPA0490 conserved hypothetical proteinchromosome CDS541110 228 - 0.627193
NA RPA4714 hypothetical proteinchromosome CDS5315755 591 - 0.712352
NA RPA2651 Endoribonuclease, protein synthesis inhibitorchromosome CDS3016936 402 + 0.681592
NA RPA4177 conserved hypothetical proteinchromosome CDS4721493 876 - 0.715753
NA RPA2908 Cytidine/deoxycytidylate deaminase:Tat pathway signalchromosome CDS3287610 645 - 0.620155
NA RPA1466 putative glutamyl-tRNA(Gln) amidotransferase subunit Achromosome CDS1626850 1806 - 0.681617
NA RPA0046 3'-5' exonucleasechromosome CDS52495 615 + 0.64878
NA RPA2202 SUN-family protein, putative RNA methyltransferasechromosome CDS2478589 1302 + 0.721966
NA RPA4451 unknown proteinchromosome CDS5026213 1236 + 0.659385
NA RPA3137 Endoribonuclease L-PSPchromosome CDS3543689 480 + 0.672917
NA RPA2477 possible ATP-dependent RNA helicasechromosome CDS2815836 1419 - 0.687104
NA RPA2675 Protein of unknown function UPF0004:Elongator protein 3/MiaB/NifBchromosome CDS3048669 1326 - 0.662142
NA RPA0194 2'_5' RNA ligasechromosome CDS217188 540 - 0.653704
NA RPA1164 possible cytidine and deoxycytidylate deaminasechromosome CDS1272066 447 - 0.686801
NA RPA4709 conserved hypothetical proteinchromosome CDS5310696 774 + 0.660207
NA RPA0918 possible 50S ribosomal protein L31chromosome CDS1020328 228 - 0.614035
NA RPA4328 elongation factor G, EF-Gchromosome CDS4877790 2052 - 0.673489
NA RPA0756 putative amidasechromosome CDS837299 1413 - 0.689314
NA RPA0867 Endoribonuclease L-PSPchromosome CDS963579 387 - 0.614987
NA RPA0491 possible MgpS, ATP-dependent helicasechromosome CDS541410 3282 - 0.676112
NA RPA3919 possible mannose-1-phosphate guanyltransferasechromosome CDS4422906 921 - 0.647123
NA RPA4490 conserved hypothetical proteinchromosome CDS5067098 981 + 0.692151
NA RPA1402 putative Glu-tRNA amidotransferase, subunit Achromosome CDS1549121 1455 + 0.653608
NA RPA2514 putative lysyl-tRNA synthetasechromosome CDS2856757 1056 + 0.678977
NA RPA3628 possible amidasechromosome CDS4089656 1398 - 0.69671
NA RPA2295 unknown proteinchromosome CDS2601286 657 + 0.69102
GatA2 RPA3107 Glu-tRNA(Gln) amidotransferase subunit Achromosome CDS3513574 1479 - 0.678837
RPL33 RPA3129 50S ribosomal protein L33chromosome CDS3537789 168 + 0.541667
RPL9 RPA3080 putative 50S ribosomal protein L9, cultivar specific nodulation protein Csn1chromosome CDS3484599 588 + 0.656463
RPS18 RPA3078 30S ribosomal protein S18chromosome CDS3483247 240 + 0.645833
RPS6 RPA3077 possible 30S ribosomal protein S6chromosome CDS3482765 477 + 0.651992
alaS RPA3847 alanyl-tRNA synthetasechromosome CDS4345322 2670 - 0.661423
argS RPA2854 arginyl-tRNA synthetasechromosome CDS3228952 1794 - 0.651059
aspS RPA3043 aspartate-tRNA ligasechromosome CDS3443227 1776 - 0.654279
ctc, rplY, L25 RPA4356 putative 50S ribosomal protein L25chromosome CDS4906874 693 - 0.675325
cysS RPA1997 cysteine-tRNA ligasechromosome CDS2246922 1392 + 0.653736
def RPA0621 putative N-formylmethionylaminoacyl-tRNA deformylasechromosome CDS688848 528 + 0.609848
eIF-2B RPA4820 translation initiation factor, aIF-2B alpha subunitchromosome CDS5443007 1125 - 0.664889
efp RPA2513 elongation factor Pchromosome CDS2856053 567 - 0.619048
fmt RPA0622 putative methionyl-tRNA formyltransferasechromosome CDS689454 933 + 0.677385
fusA, EF-G RPA3253 elongation factor Gchromosome CDS3661155 2073 - 0.626628
gatA1 RPA1469 possible glutamyl-tRNA (Gln) amidotransferase subunit Achromosome CDS1629793 1458 - 0.686557
gatB RPA3104 Glu-tRNA(Gln) amidotransferase subunit Bchromosome CDS3509284 1485 - 0.630303
gatC RPA3111 Glu-tRNA(Gln) amidotransferase subunit Cchromosome CDS3515973 288 - 0.621528
gid RPA2827 putative glucose-inhibited division protein (gid)chromosome CDS3200764 1437 + 0.656924
glnS RPA2905 glutaminyl-tRNA synthetasechromosome CDS3282795 1683 - 0.639929
gltX RPA2906 glutamyl-tRNA synthetasechromosome CDS3284639 1422 + 0.670886
gshB RPA0322 putative glutathione synthetasechromosome CDS350318 942 - 0.644374
hemK RPA0607 putative protoporphyrinogen oxidase, hemK proteinchromosome CDS675498 870 + 0.652874
ileS RPA4377 isoleucyl-tRNA synthetasechromosome CDS4928148 3018 - 0.656726
infA RPA3671 translation initiation factor if-1 (infA)chromosome CDS4145425 279 + 0.616487
infB RPA0436 putative translation initiation factor if-2chromosome CDS480385 2652 - 0.670437
infC RPA0040 translation initiation factor IF-3chromosome CDS46403 579 - 0.57513
ksgA RPA3066 dimethyladenosine transferasechromosome CDS3470964 864 + 0.66088
leuS RPA0287 leucyl-tRNA synthetasechromosome CDS315572 2631 + 0.648043
lysS RPA4685 lysyl tRNA synthetasechromosome CDS5286747 1638 - 0.639194
map RPA0387 putative methionine aminopeptidasechromosome CDS423309 825 - 0.648485
metG RPA2777 methionyl-tRNA synthetasechromosome CDS3148397 1545 + 0.651133
miaA RPA2030 tRNA isopentenyltransferasechromosome CDS2285587 966 + 0.699793
miaB RPA0448 tRNA-i(6)A37 modification enzyme MiaBchromosome CDS494549 1392 - 0.650862
nifR3 RPA2591 putative nitrogen regulation protein nifR3chromosome CDS2946224 1002 + 0.680639
pheS RPA0037 phenylalanyl-tRNA synthetase, alpha-subunitchromosome CDS44200 1083 - 0.648199
pnp RPA0432 polyribonucleotide nucleotidyltransferasechromosome CDS475919 2169 - 0.646842
prfA RPA0606 peptide chain release factor 1chromosome CDS674416 1086 + 0.656538
prfB RPA2453 translation peptide releasing factor RF-2chromosome CDS2787334 969 + 0.649123
prfC RPA2285 peptide chain release factor 3chromosome CDS2586587 1626 + 0.656212
proS RPA2928 proline-tRNA ligasechromosome CDS3312981 1317 - 0.644647
pth RPA4355 putative peptidyl-tRNA hydrolasechromosome CDS4906232 621 - 0.637681
queA RPA2605 S-adenosylmethionine tRNA ribosyltransferasechromosome CDS2962252 1095 + 0.684932
rbfA RPA0435 putative ribosome-binding factor Achromosome CDS479798 414 - 0.654589
rfbF RPA4048 alpha-D-glucose-1-phosphate cytidylyltransferasechromosome CDS4580288 768 + 0.544271
rimM RPA0243 putative 16S rRNA processing protein.chromosome CDS268124 531 - 0.685499
rluC RPA3208 possible ribosomal large subunit pseudouridine synthase Cchromosome CDS3623771 1368 - 0.696637
rluD RPA0368 possible pseudouridine synthaseschromosome CDS398328 1224 - 0.70098
rnd RPA3045 ribonuclease Dchromosome CDS3446844 1179 + 0.662426
rne RPA2450 putative ribonuclease Echromosome CDS2779169 3156 - 0.684094
rnpA RPA0633 probable ribonuclease p protein component (protein c5)chromosome CDS700222 342 - 0.666667
rph RPA0329 ribonuclease PHchromosome CDS356701 714 - 0.679272
rplA RPA3272 50S ribosomal protein L1chromosome CDS3690510 690 - 0.669565
rplB RPA3247 50S ribosomal protein L2chromosome CDS3656986 837 - 0.643967
rplC RPA3250 50S ribosomal protein L3chromosome CDS3658754 726 - 0.658402
rplD RPA3249 50S ribosomal protein L4chromosome CDS3658132 621 - 0.642512
rplE RPA3238 50S ribosomal protein L5chromosome CDS3653351 558 - 0.636201
rplF RPA3235 50S ribosomal protein L6chromosome CDS3651942 534 - 0.629214
rplJ RPA3270 50S ribosomal protein L10chromosome CDS3688040 561 - 0.629234
rplK RPA3273 50S ribosomal protein L11chromosome CDS3691207 429 - 0.617716
rplL RPA3269 50S ribosomal protein L7/L12chromosome CDS3687607 378 - 0.632275
rplM, L13 RPA2767 ribosomal protein L13chromosome CDS3139021 465 + 0.630108
rplN RPA3240 50S ribosomal protein L14chromosome CDS3654215 369 - 0.604336
rplO RPA3231 50S ribosomal protein L15chromosome CDS3650181 486 - 0.679012
rplP RPA3243 50S ribosomal protein L16chromosome CDS3655123 414 - 0.65942
rplQ RPA3225 50S ribosomal protein L17chromosome CDS3644784 420 - 0.642857
rplR RPA3234 50S ribosomal protein L18chromosome CDS3651568 363 - 0.658402
rplS, L19 RPA0241 50s ribosomal protein L19chromosome CDS266732 390 - 0.635897
rplT RPA0038 ribosomal protein L20chromosome CDS45426 360 - 0.633333
rplU, L21 RPA0158 putative ribosomal protein L21chromosome CDS177448 381 + 0.656168
rplV RPA3245 50S ribosomal protein L22chromosome CDS3656302 384 - 0.622396
rplW RPA3248 50S ribosomal protein L23chromosome CDS3657836 300 - 0.593333
rplX RPA3239 50S ribosomal protein L24chromosome CDS3653901 315 - 0.634921
rpmA, L27 RPA0159 ribosomal protein L27chromosome CDS177918 273 + 0.630037
rpmB, L28 RPA0493 50S ribosomal protein L28chromosome CDS546167 306 + 0.643791
rpmC RPA3242 50S ribosomal protein L29chromosome CDS3654908 210 - 0.62381
rpmD RPA3232 ribosomal protein L30chromosome CDS3650679 195 - 0.610256
rpmF, L32 RPA0526 50S ribosomal protein L32chromosome CDS586522 183 + 0.617486
rpmH, L34 RPA0634 possible ribosomal protein L34chromosome CDS700587 135 - 0.681481
rpmI RPA0039 50S ribosomal protein L35chromosome CDS45869 201 - 0.572139
rpmJ, L36 RPA4197 50S ribosomal protein L36chromosome CDS4741835 126 - 0.626984
rpsA RPA0064 ribosomal protein S1chromosome CDS70316 1698 + 0.628386
rpsB RPA2922 30S ribosomal protein S2chromosome CDS3302284 996 - 0.648594
rpsC RPA3244 30S ribosomal protein S3chromosome CDS3655572 708 - 0.658192
rpsD RPA1589 30S ribosomal protein S4chromosome CDS1768213 618 - 0.626214
rpsE RPA3233 ribosomal protein S5chromosome CDS3650932 576 - 0.6875
rpsG RPA3254 30S ribosomal protein S7chromosome CDS3663258 471 - 0.609342
rpsH RPA3236 30S ribosomal protein S8chromosome CDS3652588 399 - 0.636591
rpsI, S9 RPA2768 ribosomal protein S9chromosome CDS3139487 483 + 0.664596
rpsJ RPA3251 30S ribosomal protein S10chromosome CDS3659530 309 - 0.618123
rpsK RPA3227 30S ribosomal protein S11chromosome CDS3646512 390 - 0.671795
rpsL RPA3255 30S ribosomal protein S12chromosome CDS3663744 372 - 0.634409
rpsM RPA3228 30S ribosomal protein S13chromosome CDS3647032 387 - 0.625323
rpsN RPA3237 30S ribosomal protein S14chromosome CDS3653002 306 - 0.617647
rpsO RPA0433 ribosomal protein S15chromosome CDS478426 270 - 0.592593
rpsP, S16 RPA0244 ribosomal protein S16chromosome CDS268667 321 - 0.660436
rpsQ RPA3241 30S ribosomal protein S17chromosome CDS3654647 249 - 0.598394
rpsS RPA3246 30S ribosomal protein S19chromosome CDS3656696 279 - 0.637993
rpsT RPA4836 30S ribosomal protein S20chromosome CDS5458392 267 + 0.666667
rpsU, S21 RPA4176 ribosomal protein S21chromosome CDS4721053 264 + 0.643939
rrf RPA2919 ribosome releasing factorchromosome CDS3299823 561 - 0.643494
rrm1 RPA3364 putative rRNA methylasechromosome CDS3807406 828 + 0.707729
serS RPA2845 seryl-tRNA synthetasechromosome CDS3220208 1305 - 0.661303
sygA RPA1045 glycyl-tRNA synthetase alpha chainchromosome CDS1147992 951 + 0.647739
sygB RPA1047 putative glycyl-tRNA synthetase, beta chainchromosome CDS1149506 2331 + 0.613471
tgt RPA2606 tRNA guanine transglycosylasechromosome CDS2963343 1134 + 0.677249
thrS RPA3406 threonyl-tRNA synthetasechromosome CDS3844183 1977 + 0.647951
tly RPA0950 putative hemolysinchromosome CDS1050674 741 - 0.676113
trmD RPA0242 putative tRNA (guanine-N1)-methyltransferasechromosome CDS267235 747 - 0.689424
trmU RPA1306 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS1425895 1206 + 0.689884
trpS RPA0455 trytophanyl-tRNA synthetasechromosome CDS500093 1053 - 0.62868
truA RPA0623 putative tRNA-pseudouridine synthasechromosome CDS690564 747 + 0.674699
truB RPA0434 putative tRNA pseudouridine 55 synthasechromosome CDS478698 1101 - 0.683924
tsf RPA2921 elongation factor Tschromosome CDS3301233 927 - 0.645092
tuf, EF-Tu RPA3283 elongation factor Tuchromosome CDS3702061 1191 - 0.647355
tufA, EF-Tu RPA3252 elongation factor Tuchromosome CDS3659926 1191 - 0.647355
tyrS RPA2460 tyrosyl-tRNA synthetasechromosome CDS2797634 1257 - 0.630072
valS RPA2583 valyl-tRNA synthetasechromosome CDS2937609 2874 + 0.653793
yfcB RPA1167 possible adenine-specific methylasechromosome CDS1275882 1023 - 0.667644
yjbN RPA1969 NifR3/Smm1 family proteinchromosome CDS2218343 996 + 0.666667