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2024-05-04 09:32:37

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Prochlorococcus marinus str. MIT 9313, MIT9313

Number of genes found: 153

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Prochlorococcus marinus str. MIT 9313, MIT9313
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA PMT0067 hypothetical proteinchromosome CDS69418 1110 - 0.467568
NA PMT0599 putative cytidine/deoxycytidylate deaminasechromosome CDS655377 492 + 0.53252
NA PMT2118 possible tRNA synthetases class I (C)chromosome CDS2234364 318 - 0.430818
NA PMT2025 possible Fungal Zn(2)-Cys(6) binuclear clusterchromosome CDS2137411 267 - 0.498127
NA PMT0970 possible Herpesvirus VP23 like capsid proteinchromosome CDS1048734 291 - 0.460481
NA PMT0750 putative tRNA/rRNA methyltransferase (SpoU family)chromosome CDS818293 501 + 0.51497
NA PMT0636 possible PH domainchromosome CDS688820 639 - 0.452269
NA PMT1195 conserved hypothetical proteinchromosome CDS1285434 429 + 0.543124
NA PMT0323 conserved hypothetical proteinchromosome CDS369057 1443 - 0.564103
NA PMT1591 conserved hypothetical proteinchromosome CDS1692026 981 + 0.565749
NA PMT1659 conserved hypothetical proteinchromosome CDS1765296 591 - 0.576988
NA PMT1132 probable tRNA/rRNA methyltransferasechromosome CDS1223313 750 + 0.56
NA PMT2028 Translation initiation factor SUI1chromosome CDS2140527 390 + 0.582051
NA PMT0270 Sun protein (Fmu protein)chromosome CDS308842 1356 + 0.573009
NA PMT2103 conserved hypothetical proteinchromosome CDS2216735 645 - 0.475969
NA PMT2042 Pseudouridine synthasechromosome CDS2154829 1017 - 0.564405
NA PMT0101 acetyltransferasechromosome CDS115006 540 + 0.368519
NA PMT0175 possible Fe-S oxidoreductasechromosome CDS197762 1419 - 0.571529
NA PMT0650 tRNA/rRNA methyltransferasechromosome CDS704882 1608 - 0.550995
NA PMT0196 similar to tRNA-(MS[2]IO[6]A)-hydroxylasechromosome CDS228464 615 + 0.573984
NA PMT1394 Glutamyl/Glutaminyl-tRNA synthetasechromosome CDS1480254 921 - 0.570033
NA PMT1901 Initiation factor 2 subunit familychromosome CDS2002289 1113 + 0.562444
NA PMT0384 Formylmethionine deformylasechromosome CDS433040 579 - 0.509499
NA PMT2001 Poly A polymerase familychromosome CDS2114726 1239 + 0.56255
NA PMT1182 conserved hypothetical proteinchromosome CDS1272926 501 + 0.528942
NA PMT0737 RNA methyltransferase, TrmA familychromosome CDS803087 1398 + 0.409156
NA PMT1083 putative ATP-dependent RNA helicasechromosome CDS1169058 1908 - 0.533543
NA PMT1174 similar to N2,N2-dimethylguanosine tRNA methyltransferasechromosome CDS1265520 1275 - 0.56
NA PMT1170 possible pseudouridine synthasechromosome CDS1262582 648 + 0.555556
NA PMT1910 tRNA nucleotidyltransferase/poly(A) polymerasechromosome CDS2016021 1260 - 0.57619
NA PMT0621 putative rRNA (adenine-N6,N6)-dimethyltransferasechromosome CDS675068 843 - 0.538553
NA PMT0344 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS391094 1296 - 0.560185
NA PMT1482 FtsJ cell division protein:S4 domain:Hemolysin Achromosome CDS1565045 804 - 0.577114
NA PMT0268 tRNA/rRNA methyltransferase (SpoU)chromosome CDS307753 738 - 0.55149
NA PMT0200 putative nitrogen regulation protein NifR3 family homologchromosome CDS231248 1011 - 0.582591
NA PMT1660 hemK family proteinchromosome CDS1765858 921 - 0.541802
NA PMT2012 Putative sugar-phosphate nucleotidyl transferasechromosome CDS2127021 1179 + 0.526718
NA PMT2212 Class I peptide chain release factorchromosome CDS2338686 432 + 0.444444
NA PMT1789 S1 RNA binding domain:Ribonuclease E and Gchromosome CDS1886902 1944 - 0.548354
NA PMT2124 possible [2Fe-2S] binding domainchromosome CDS2236770 252 - 0.468254
NA PMT1155 probable GTP-binding proteinchromosome CDS1243758 1092 - 0.519231
NA PMT0015 conserved hypothetical proteinchromosome CDS17842 1020 - 0.530392
NA PMT1297 chromosome CDS1384865 1779 - 0.449129
alaS,lovB PMT2157 Alanyl-tRNA synthetase:DHHA1 domainchromosome CDS2276514 2679 - 0.558791
argS PMT2070 Arginyl-tRNA synthetasechromosome CDS2176837 1839 - 0.55193
aspS PMT2216 Aspartyl-tRNA synthetasechromosome CDS2342881 1821 + 0.558484
cysRS PMT1159 Cysteinyl-tRNA synthetasechromosome CDS1250259 1536 + 0.565104
def PMT1601 putative formylmethionine deformylasechromosome CDS1699838 606 - 0.533003
efp PMT0031 Elongation factor P (EF-P)chromosome CDS34145 561 + 0.495544
fmt PMT0772 putative methionyl-tRNA formyltransferasechromosome CDS842133 1029 + 0.483965
frr,rrf PMT1245 Ribosome recycling factorchromosome CDS1332897 549 + 0.469945
fusA PMT1781 Elongation factor G, EF-Gchromosome CDS1879438 2076 + 0.526012
gatA PMT0648 Glutamyl-tRNA(Gln) amidotransferase A subunitchromosome CDS703044 1461 - 0.554415
gatB PMT2139 Glutamyl-tRNA(Gln) amidotransferase subunit Bchromosome CDS2250652 1488 - 0.540995
gatC PMT1815 Glu-tRNAGln amidotransferase C subunitchromosome CDS1920029 294 + 0.503401
gidA PMT1049 NAD binding site:Glucose inhibited division protein A familychromosome CDS1129688 1095 + 0.547032
gidA PMT1050 possible glucose inhibited division protein Achromosome CDS1130818 273 + 0.538462
gltX PMT1308 Glutamyl-tRNA synthetasechromosome CDS1395402 1431 + 0.540881
glyQ,glyS(a) PMT0283 Glycyl-tRNA synthetase, alpha subunitchromosome CDS321697 903 + 0.498339
glyS PMT0578 putative Glycyl-tRNA synthetase, beta subunitchromosome CDS632476 2166 - 0.54109
gshB PMT2061 putative Glutathione synthetasechromosome CDS2170600 957 - 0.576802
hisS PMT1905 Histidyl-tRNA synthetasechromosome CDS2008881 1281 - 0.548009
ileS PMT1817 t-RNA synthetase, class Ia:Isoleucyl-tRNA synthetasechromosome CDS1922713 2907 + 0.561404
infA PMT1169 translation initiation factor IF-1chromosome CDS1262081 270 - 0.57037
infB PMT1528 Translation initiation factor IF-2chromosome CDS1618709 3378 + 0.583481
infC PMT0119 Translatioin Initiation factor 3chromosome CDS136728 660 - 0.512121
leuS PMT0715 t-RNA synthetase, class Ia:Leucyl-tRNA synthetasechromosome CDS772530 2637 - 0.480849
lrtA PMT0213 light repressed protein A homologchromosome CDS243623 588 - 0.552721
lysS PMT0147 Lysyl-tRNA synthetasechromosome CDS166179 1527 + 0.535691
map PMT1305 putative methionine aminopeptidasechromosome CDS1392798 840 - 0.553571
metG PMT0743 putative methionyl-tRNA synthetasechromosome CDS812071 1548 + 0.448966
miaA,trpX PMT0120 tRNA delta-2-isopentenylpyrophosphate (IPP) transferasechromosome CDS137450 900 - 0.566667
pheS PMT0367 Phenylalanyl-tRNA synthetase, alpha subunitchromosome CDS413385 1008 + 0.566468
pnp PMT1377 polyribonucleotide nucleotidyltransferasechromosome CDS1461150 2172 + 0.55709
prfA,sueB PMT1761 peptide chain release factor RF-1chromosome CDS1851246 1098 + 0.54827
prfB PMT2063 peptide-chain-release factor RF-2chromosome CDS2171875 1129 + 0.548273
prfC PMT0791 peptide chain release factor RF-3chromosome CDS864375 1716 - 0.487179
prmA PMT1430 putative methyltransferase for Ribosomal protein L11chromosome CDS1518113 906 - 0.555188
proS,drpA PMT1259 tRNA synthetases, class-II (G, H, P and S):Prolyl-tRNA synthetasechromosome CDS1348272 1800 + 0.545556
pth PMT1835 Peptidyl-tRNA hydrolasechromosome CDS1942219 621 - 0.536232
queA PMT0223 Queuosine biosynthesis proteinchromosome CDS257620 1116 + 0.571685
rbfA PMT1963 Ribosome-binding factor Achromosome CDS2073673 429 + 0.519814
rimM PMT1951 possible 16S rRNA processing protein RimMchromosome CDS2061012 546 + 0.554945
rluA PMT1112 putative pseudouridylate synthasechromosome CDS1205269 624 - 0.504808
rluD PMT2109 putative pseudouridylate synthase specific to ribosomal large subunitchromosome CDS2222410 975 + 0.532308
rnd PMT1703 putative ribonuclease Dchromosome CDS1802549 645 - 0.533333
rnpA PMT1369 bacterial ribonuclease P protein component of ribozymechromosome CDS1454075 387 + 0.527132
rph PMT1830 ribonuclease PHchromosome CDS1938736 735 + 0.570068
rpl1, rplA PMT2089 50S ribosomal protein L1chromosome CDS2202908 708 + 0.535311
rpl10, rplJ PMT2090 50S ribosomal protein L10chromosome CDS2203852 528 + 0.545455
rpl11, rplK PMT2088 50S ribosomal protein L11chromosome CDS2202397 426 + 0.525822
rpl12, rplL, rpl7 PMT2091 50S ribosomal protein L7/L12chromosome CDS2204429 396 + 0.532828
rpl13, rplM PMT1758 50S ribosomal protein L13chromosome CDS1850005 453 + 0.540839
rpl14, rplN PMT1742 50S Ribosomal protein L14chromosome CDS1840523 366 + 0.543716
rpl15, rplO PMT1749 50S ribosomal protein L15chromosome CDS1843940 456 + 0.541667
rpl16, rplP PMT1739 50S ribosomal protein L16chromosome CDS1839550 477 + 0.566038
rpl17, rplQ PMT1756 50S ribosomal protein L17chromosome CDS1848526 351 + 0.547009
rpl18, rplR PMT1747 50S ribosomal protein L18chromosome CDS1842920 369 + 0.612466
rpl19 PMT1306 Ribosomal protein L19chromosome CDS1394182 477 + 0.536688
rpl2, rplB PMT1735 50S ribosomal protein L2chromosome CDS1837238 864 + 0.611111
rpl20, rplT PMT0055 50S ribosomal protein L20chromosome CDS55427 348 - 0.54023
rpl21, rplU PMT1420 50S ribosomal protein L21chromosome CDS1508982 390 + 0.520513
rpl22, rplV PMT1737 50S ribosomal protein L22chromosome CDS1838417 369 + 0.577236
rpl23, rplW PMT1734 50S ribosomal protein L23chromosome CDS1836919 303 + 0.561056
rpl24, rplX PMT1743 50S ribosomal protein L24chromosome CDS1840890 357 + 0.512605
rpl27, rpmA PMT1421 50S ribosomal protein L27chromosome CDS1509414 267 + 0.59176
rpl28, rpmB PMT0695 50S ribosomal protein L28chromosome CDS750338 237 - 0.531646
rpl29, rpmC PMT1740 50S ribosomal protein L29chromosome CDS1840030 213 + 0.633803
rpl3, rplC PMT1732 50S ribosomal protein L3chromosome CDS1835635 657 + 0.572298
rpl31, rpmE PMT1760 50S ribosomal protein L31chromosome CDS1850910 282 + 0.496454
rpl32, rpmF PMT0757 50S ribosomal protein L32chromosome CDS828065 177 + 0.463277
rpl33, rpmG PMT0739 50S ribosomal protein L33chromosome CDS807045 195 + 0.517949
rpl34,rpmH PMT1368 50S ribosomal protein L34chromosome CDS1453877 138 + 0.536232
rpl35, rpmI PMT0056 50S ribosomal protein L35chromosome CDS55846 198 - 0.525253
rpl4, rplD PMT1733 50S ribosomal protein L4chromosome CDS1836291 636 + 0.570755
rpl5, rplE PMT1744 50S ribosomal protein L5chromosome CDS1841366 540 + 0.55
rpl6, rplF PMT1746 50S ribosomal protein L6chromosome CDS1842347 540 + 0.562963
rpl9, rplI PMT2175 50S ribosomal protein L9chromosome CDS2301761 459 + 0.54902
rpmJ,rpl36 PMT1752 50S Ribosomal protein L36chromosome CDS1846458 114 + 0.570175
rps10, rpsJ PMT1783 30S ribosomal protein S10chromosome CDS1882903 321 + 0.517134
rps11, rpsK PMT1754 30S ribosomal protein S11chromosome CDS1847108 393 + 0.580153
rps12, rpsL PMT1779 30S ribosomal protein S12chromosome CDS1878432 378 + 0.568783
rps13, rpsM PMT1753 30S ribosomal protein S13chromosome CDS1846679 366 + 0.54918
rps14, rpsN PMT1376 30S Ribosomal protein S14chromosome CDS1460660 303 + 0.537954
rps15, rpsO PMT0645 30S Ribosomal protein S15chromosome CDS698672 270 + 0.52963
rps17, rpsQ PMT1741 30S Ribosomal protein S17chromosome CDS1840260 267 + 0.565543
rps18, rpsR PMT0740 30S Ribosomal protein S18chromosome CDS807278 222 + 0.427928
rps19, rpsS PMT1736 30S Ribosomal protein S19chromosome CDS1838137 276 + 0.525362
rps1a, rpsA1 PMT1668 30S ribosomal protein S1, homolog Achromosome CDS1772275 1104 + 0.533514
rps1b, rpsA2, nbp1 PMT1233 30S ribosomal protein S1 homolog B, putative Nbp1chromosome CDS1319571 1266 + 0.547393
rps2, rpsB PMT0584 30S ribosomal protein S2chromosome CDS642035 720 - 0.531944
rps21, rpsU PMT1022 30S Ribosomal protein S21chromosome CDS1097999 177 - 0.536723
rps3, rpsC PMT1738 30S ribosomal protein S3chromosome CDS1838805 729 + 0.595336
rps6, rpsF PMT2259 30S ribosomal protein S6chromosome CDS2391976 375 + 0.538667
rps7, rpsG PMT1780 30S ribosomal protein S7chromosome CDS1878875 471 + 0.575372
rps8, rpsH PMT1745 30S ribosomal protein S8chromosome CDS1841930 402 + 0.557214
rps9, rpsI PMT1759 30S ribosomal protein S9chromosome CDS1850454 408 + 0.578431
rpsD,rps4 PMT0227 30S ribosomal protein S4chromosome CDS262582 609 - 0.558292
rpsE,rps5 PMT1748 30S ribosomal protein S5chromosome CDS1843303 630 + 0.588889
rpsP,rps16 PMT0350 30S Ribosomal protein S16chromosome CDS399916 369 + 0.552846
rpsT,rps20 PMT1509 30S Ribosomal protein S20chromosome CDS1597716 303 - 0.508251
rsuA PMT1069 putative pseudouridylate synthase specific to ribosomal small subunitchromosome CDS1154735 735 + 0.515646
serRS PMT1374 putative seryl-tRNA synthetasechromosome CDS1458160 1290 + 0.552713
spoU PMT0334 tRNA/rRNA methyltransferase (SpoU)chromosome CDS381328 828 + 0.578502
tgt PMT1862 tRNA-guanine transglycosylasechromosome CDS1969507 1119 + 0.554066
thrS PMT0424 Threonyl-tRNA synthatasechromosome CDS474279 1923 + 0.433697
trpS PMT0422 t-RNA synthetase, class Ib:Tryptophanyl-tRNA synthetasechromosome CDS471628 1014 + 0.542406
truA PMT1757 tRNA pseudouridine synthase Achromosome CDS1848915 888 + 0.540541
truB PMT1422 Putative tRNA pseudouridine synthasechromosome CDS1509744 963 + 0.575286
tsf PMT0583 putative Elongation factor Ts, EF-Tschromosome CDS641296 657 - 0.506849
tufA PMT1782 Elongation factor Tu, EF-Tuchromosome CDS1881556 1200 + 0.540833
tyrS PMT1403 t-RNA synthetase, class Ib:Tyrosyl-tRNA synthetasechromosome CDS1489398 1227 - 0.539527
valS PMT2191 t-RNA synthetase, class Ia:Valyl-tRNA synthetasechromosome CDS2316598 2844 - 0.553094