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2024-05-02 22:17:58

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Photorhabdus luminescens subsp. laumondii TTO1, TTO1

Number of genes found: 198

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Photorhabdus luminescens subsp. laumondii TTO1, TTO1
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA plu3190 chromosome CDS3752821 945 - 0.456085
NA plu4364 chromosome CDS5097466 1038 - 0.442197
NA plu2802 chromosome CDS3327952 633 + 0.406003
NA plu3505 chromosome CDS4096925 531 - 0.404896
NA plu1412 chromosome CDS1694887 1857 + 0.332795
NA plu3989 chromosome CDS4675250 600 - 0.421667
NA plu1205 chromosome CDS1387652 855 - 0.48538
NA plu4537 chromosome CDS5299591 294 + 0.428571
NA plu3320 chromosome CDS3939979 522 - 0.448276
NA plu4830 chromosome CDS5604621 1173 + 0.263427
NA plu0665 chromosome CDS764002 771 + 0.440986
NA plu3514 chromosome CDS4108262 1500 - 0.369333
NA plu2767 chromosome CDS3279612 399 + 0.360902
NA plu2704 chromosome CDS3204991 3879 + 0.34777
NA plu0885 chromosome CDS1014542 453 + 0.335541
NA plu3926 chromosome CDS4604899 819 - 0.411477
NA plu3062 chromosome CDS3565635 345 - 0.356522
NA plu2537 chromosome CDS2984737 312 - 0.387821
NA plu4498 chromosome CDS5255551 387 + 0.436693
NA plu4692 chromosome CDS5477006 570 - 0.403509
NA plu2861 chromosome CDS3396476 573 + 0.43281
NA plu2456 chromosome CDS2887754 621 - 0.425121
NA plu1274 chromosome CDS1482970 1017 + 0.470993
NA plu0875 chromosome CDS1002027 951 - 0.415352
NA plu4088 chromosome CDS4775714 966 + 0.5
NA plu1932 chromosome CDS2299279 261 - 0.383142
NA plu2128 chromosome CDS2512098 345 - 0.434783
NA plu2264 chromosome CDS2662395 288 - 0.395833
NA plu4574 chromosome CDS5337969 735 - 0.49932
NA plu2426 chromosome CDS2848897 327 - 0.452599
NA plu1413 chromosome CDS1696740 675 + 0.345185
NA plu4331 chromosome CDS5060010 159 + 0.415094
NA plu1513 chromosome CDS1812841 543 - 0.379374
NA plu0201 chromosome CDS207548 1200 + 0.365
NA plu4327 chromosome CDS5057199 483 - 0.36853
NA plu0228 chromosome CDS237589 1464 - 0.432377
NA plu1641 chromosome CDS1961833 621 - 0.449275
NA plu3566 chromosome CDS4201767 852 - 0.453052
NA plu4834 chromosome CDS5608526 489 + 0.419223
NA plu2200 chromosome CDS2587792 1344 + 0.424107
NA plu2385 chromosome CDS2800483 450 + 0.413333
NA plu3932 chromosome CDS4614368 921 + 0.409338
NA plu4265 chromosome CDS4989752 1494 + 0.362784
NA plu4197 chromosome CDS4911020 495 - 0.507071
NA plu1266 chromosome CDS1466407 363 - 0.360882
NA plu1512 chromosome CDS1811675 933 + 0.46731
NA plu4042 chromosome CDS4731412 288 + 0.409722
NA plu2644 chromosome CDS3096679 1800 + 0.405
NA plu2452 chromosome CDS2878920 933 - 0.500536
NA plu2936 chromosome CDS3449821 684 + 0.396199
NA plu0951 chromosome CDS1093367 366 + 0.486339
NA plu2054 chromosome CDS2425992 1092 - 0.482601
NA plu1584 chromosome CDS1890645 1134 + 0.435626
NA plu1458 chromosome CDS1751484 852 - 0.420188
NA plu0255 chromosome CDS271784 291 + 0.388316
NA plu3981 chromosome CDS4669337 324 + 0.37963
NA plu3285 chromosome CDS3899480 726 - 0.453168
NA plu3063 chromosome CDS3566206 537 - 0.284916
NA plu2105 chromosome CDS2489450 291 + 0.42268
alaS plu1250 alanyl-tRNA synthetase (alanine--tRNA ligase)chromosome CDS1445660 2631 + 0.429875
ansA plu2554 L-asparaginase I (L-asparagine amidohydrolase I) (L-asnase I)chromosome CDS2998855 1020 + 0.439216
ansB plu1616 L-asparaginase II precursor (L-asparagine amidohydrolase II) (L-asnase II) (colaspase)chromosome CDS1932051 1044 + 0.464559
argS plu2092 Arginyl-tRNA synthetase (Arginine-tRNA ligase)chromosome CDS2478472 1731 - 0.470826
asnS plu1753 asparaginyl-tRNA synthetasechromosome CDS2091255 1401 - 0.480371
aspS plu2107 aspartyl-tRNA synthetase (aspartate--tRNA ligase) (asprs)chromosome CDS2490539 1773 + 0.473209
cafA plu4067 ribonuclease G (RNase G) (cytoplasmic axial filament protein)chromosome CDS4752198 1470 - 0.432653
cca plu3972 tRNA nucleotidyltransferase (tRNA adenylyltransferase) (tRNA CCA-pyrophosphorylase) (CCA-adding enzyme)chromosome CDS4658672 1251 + 0.463629
cysS plu3804 cysteinyl-tRNA synthetase (cysteine--tRNA ligase) (CysRS)chromosome CDS4470836 1386 - 0.457431
deaD plu4523 inducible ATP-independent RNA helicasechromosome CDS5281393 1935 - 0.483204
def plu4695 polypeptide deformylase (PDF) (formylmethionine deformylase)chromosome CDS5479412 513 + 0.405458
dtd plu0242 D-Tyr-tRNATyr deacylasechromosome CDS257806 438 + 0.481735
efp plu4130 elongation factor P (EF-P)chromosome CDS4818449 567 - 0.426808
fmt plu4696 methionyl-tRNA formyltransferasechromosome CDS5479949 948 + 0.412447
frr plu0675 ribosome releasing factorchromosome CDS775085 558 + 0.444444
fusA plu0431 translation elongation factor EF-Gchromosome CDS456977 2109 + 0.471788
genX plu4121 Putative lysyl-tRNA synthetase (Lysine--tRNA ligase)chromosome CDS4809126 978 - 0.445808
glnS plu1319 glutaminyl-tRNA synthetase precursor (glutamine--tRNA ligase)chromosome CDS1531273 1668 + 0.444245
gltX plu1401 glutamyl-tRNA synthetase, catalytic subunitchromosome CDS1682226 1419 - 0.459478
glyQ plu0293 glycyl-tRNA synthetase alpha chain (glycine--tRNA ligase alpha chain) (GlyRS)chromosome CDS310052 915 + 0.477596
glyS plu0294 glycyl-tRNA synthetase beta chain (glycine--TRNA ligase beta chain) (GlyRS)chromosome CDS310976 2070 + 0.474879
gshB plu1184 glutathione synthase (glutathione synthase) (GSH synthetase) (GSH-S)chromosome CDS1366819 951 - 0.457413
hemK plu2071 Protein methyltranferase HemK (Protein-glutamine N-methyltransferase)chromosome CDS2453247 849 + 0.451119
hisS plu1377 histidine-tRNA ligasechromosome CDS1656438 1278 + 0.472613
hslR plu0098 Heat shock protein 15 (HSP15)chromosome CDS94864 417 + 0.441247
ileS plu0591 isoleucine tRNA synthetasechromosome CDS671962 2814 + 0.471571
infA plu1595 translation initiation factor IF-1chromosome CDS1902666 219 - 0.456621
infB plu4529 translation initiation factor IF-2chromosome CDS5288806 2730 - 0.461538
infC plu2668 translation initiation factor IF-3chromosome CDS3121722 426 - 0.457746
ksgA plu0609 S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferasechromosome CDS691139 819 - 0.454212
leuS plu1303 leucine-tRNA synthetase (leucine--tRNA ligase) (LEURS)chromosome CDS1510833 2583 - 0.466899
lysS plu3548 Lysyl-tRNA synthetase (Lysine--tRNA ligase)chromosome CDS4181518 1515 - 0.462706
map plu0671 methionine aminopeptidasechromosome CDS771127 798 - 0.444862
miaA plu4582 tRNA delta(2)-isopentenylpyrophosphate transferase (IPP transferase) (Isopentenyl-diphosphate:tRNA isopentenyltransferase) (IPTase) (IPPT)chromosome CDS5347517 942 - 0.451168
miaB plu1312 tRNA-methylthiotransferase MiaB proteinchromosome CDS1521327 1431 - 0.45283
miaE plu0721 tRNA-(MS[2]IO[6]A)-hydroxylasechromosome CDS830155 762 - 0.400262
pbgP3 plu2658 PbgP3 proteinchromosome CDS3110950 1983 - 0.411498
pcnB plu0874 Poly(A) polymerase (PAP) (Plasmid copy number protein)chromosome CDS1000434 1566 - 0.458493
pheS plu2665 phenylalanyl-tRNA synthetase alpha chain (phenylalanine--tRNA ligase alpha chain)chromosome CDS3119774 984 - 0.441057
pnp plu4525 polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) (PNPase) (CAP87K)chromosome CDS5284616 2130 - 0.450704
prfA plu2070 Peptide chain release factor 1 (RF-1)chromosome CDS2452165 1083 + 0.486611
prfB plu3549 Peptide chain release factor 2 (RF-2)chromosome CDS4183042 933 - 0.442658
prfC plu4249 peptide chain release factor 3 (RF-3)chromosome CDS4971601 1590 - 0.460377
prmA plu4087 ribosomal protein L11 methyltransferasechromosome CDS4774540 891 + 0.464646
proS plu0692 prolyl-tRNA synthetasechromosome CDS795163 1719 - 0.456079
pth plu2055 peptidyl-tRNA hydrolasechromosome CDS2427225 591 - 0.450085
queA plu3905 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (queuosine biosynthesis protein QueA)chromosome CDS4577112 1068 - 0.455056
rbfA plu4528 ribosome-binding factor A (fragment)chromosome CDS5288330 411 - 0.43309
rhlB plu4665 ATP-dependent RNA helicase RhlBchromosome CDS5438290 1287 + 0.466977
rhlE plu1511 ATP-dependent RNA helicase RhlEchromosome CDS1810367 1305 + 0.465134
rimJ plu2090 Ribosomal-protein-alanine acetyltransferase (Acetylating enzyme for N-terminal of ribosomal protein S5)chromosome CDS2474591 585 + 0.420513
rimM plu1258 16S rRNA processing proteinchromosome CDS1456325 558 + 0.426523
rluA plu0614 ribosomal large subunit pseudouridine synthase A (pseudouridylate synthase) (uracil hydrolyase)chromosome CDS698009 651 - 0.473118
rluC plu2840 ribosomal large subunit pseudouridine synthase C (pseudouridylate synthase) (uracil hydrolyase)chromosome CDS3368433 960 - 0.434375
rluD plu1268 ribosomal large subunit pseudouridine synthase D (pseudouridylate synthase) (uracil hydrolyase)chromosome CDS1467927 978 + 0.449898
rmf plu1769 ribosome modulation factor (protein E)chromosome CDS2113137 168 + 0.488095
rnd plu2135 Ribonuclease D (RNase D)chromosome CDS2519651 1128 + 0.447695
rne plu2841 ribonuclease E (RNase E)chromosome CDS3369952 3105 + 0.463446
rnpA plu4908 ribonuclease P protein component (RNaseP protein) (RNase P protein) (Protein C5)chromosome CDS5688016 360 - 0.494444
rph plu4870 ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)chromosome CDS5643409 729 - 0.478738
rplA plu0436 50S ribosomal subunit protein L1chromosome CDS462141 702 + 0.472934
rplB plu4723 50S ribosomal protein L2chromosome CDS5495812 825 - 0.466667
rplC plu4726 50S ribosomal protein L3chromosome CDS5497577 630 - 0.465079
rplD plu4725 50S ribosomal protein Lchromosome CDS5496955 606 - 0.457096
rplE plu4714 50S ribosomal protein L5chromosome CDS5492155 540 - 0.468519
rplF plu4711 50S ribosomal protein L6chromosome CDS5490863 534 - 0.47191
rplI plu4570 50S ribosomal protein L9chromosome CDS5336224 453 - 0.463576
rplJ plu0437 50S ribosomal subunit protein L10chromosome CDS463159 507 + 0.493097
rplK plu0435 ribosomal protein L11chromosome CDS461709 429 + 0.473193
rplL plu0438 50S ribosomal protein L7/L12 (L8)chromosome CDS463729 372 + 0.462366
rplM plu4015 50S ribosomal protein L13chromosome CDS4704752 429 - 0.480186
rplN plu4716 50S ribosomal protein L14chromosome CDS5493034 372 - 0.489247
rplO plu4707 50S ribosomal protein L15chromosome CDS5489362 435 - 0.478161
rplP plu4719 50S ribosomal protein L16chromosome CDS5494030 411 - 0.491484
rplQ plu4701 50S ribosomal protein L17chromosome CDS5484857 393 - 0.521628
rplR plu4710 50S ribosomal protein L18chromosome CDS5490500 354 - 0.49435
rplS plu1260 50S ribosomal subunit protein L19chromosome CDS1457739 354 + 0.468927
rplT plu2666 50S ribosomal protein L20chromosome CDS3121029 357 - 0.490196
rplU plu4542 50S ribosomal protein L21chromosome CDS5303975 309 - 0.478964
rplV plu4721 50S ribosomal protein L22chromosome CDS5495172 333 - 0.48048
rplW plu4724 50S ribosomal protein L23chromosome CDS5496656 303 - 0.468647
rplX plu4715 50S ribosomal protein L24chromosome CDS5492709 315 - 0.419048
rplY plu2869 ribosomal protein L25chromosome CDS3405583 285 + 0.445614
rpmA plu4541 50S ribosomal protein L27chromosome CDS5303698 258 - 0.468992
rpmB plu4864 50S ribosomal protein L28chromosome CDS5638763 237 - 0.485232
rpmC plu4718 50S ribosomal protein L29chromosome CDS5493839 192 - 0.46875
rpmD plu4708 50S ribosomal protein L30chromosome CDS5489800 180 - 0.427778
rpmE plu4758 50S ribosomal protein L31chromosome CDS5539633 216 - 0.449074
rpmE plu0036 50S ribosomal protein L31chromosome CDS30574 255 - 0.407843
rpmF plu2837 50S ribosomal protein L32chromosome CDS3366996 171 - 0.450292
rpmG plu4863 50S ribosomal protein L33chromosome CDS5638584 168 - 0.369048
rpmH plu4909 50S ribosomal protein L34chromosome CDS5688392 141 - 0.510638
rpmI plu2667 50S ribosomal protein L35chromosome CDS3121427 198 - 0.469697
rpmJ plu0035 50S ribosomal protein L36chromosome CDS30414 141 - 0.390071
rpsA plu1622 30S ribosomal protein S1chromosome CDS1938005 1674 + 0.457587
rpsB plu0672 30S ribosomal subunit protein S2chromosome CDS772356 726 + 0.438017
rpsC plu4720 30S ribosomal protein S3chromosome CDS5494453 702 - 0.464387
rpsD plu4703 30S ribosomal protein S4chromosome CDS5486305 621 - 0.483092
rpsE plu4709 30S ribosomal protein S5chromosome CDS5489985 501 - 0.493014
rpsF plu4573 30S ribosomal protein S6chromosome CDS5337270 396 - 0.487374
rpsG plu0430 30S ribosomal subunit protein S7chromosome CDS456426 471 + 0.469214
rpsH plu4712 30S ribosomal protein S14chromosome CDS5491411 393 - 0.470738
rpsI plu4014 30S ribosomal protein S9chromosome CDS4704344 393 - 0.491094
rpsJ plu4727 30S ribosomal protein S10chromosome CDS5498239 312 - 0.49359
rpsK plu4704 30S ribosomal protein S11chromosome CDS5486963 390 - 0.494872
rpsL plu0429 ribosomal protein S12chromosome CDS455954 375 + 0.490667
rpsM plu4705 30S ribosomal protein S13chromosome CDS5487368 357 - 0.492997
rpsN plu4713 30S ribosomal protein S14chromosome CDS5491837 306 - 0.473856
rpsO plu4526 30S ribosomal protein S15chromosome CDS5286991 270 - 0.451852
rpsP plu1257 ribosomal protein S16chromosome CDS1456067 249 + 0.477912
rpsQ plu4717 30S ribosomal protein S17chromosome CDS5493585 255 - 0.407843
rpsR plu4571 30S ribosomal protein S18chromosome CDS5336715 228 - 0.495614
rpsS plu4722 30S ribosomal protein S19chromosome CDS5495519 279 - 0.469534
rpsT plu0589 ribosomal protein S20chromosome CDS670379 264 - 0.435606
rpsU plu3977 30S ribosomal subunit protein S21chromosome CDS4663462 216 + 0.472222
rrmJ plu4536 Ribosomal RNA large subunit methyltransferase J (rRNA (uridine-2'-O-)-methyltransferase) (23S rRNA m2U2552 methyltransferase) (Cell division protein Fchromosome CDS5298821 630 - 0.45873
rsmB plu4697 RsmB protein (SUN/FMU protein), 16S RNA m5C967 methyltransferasechromosome CDS5480967 1290 + 0.404651
rsmC plu4252 ribosomal RNA small subunit methyltransferase C (rRNA (guanine-N2-)-methyltransferase) (16S rRNA m2G1207 methyltransferase)chromosome CDS4974306 1017 + 0.457227
rsuA plu2867 ribosomal small subunit pseudouridine synthase A (16S pseudouridylate 516 synthase) (16S pseudouridine 516 synthase) (uracil hydrolyase)chromosome CDS3402676 702 - 0.448718
rumA plu0909 23S rRNA (Uracil-5-)-methyltransferase rumA (23S rRNA(M-5-U1939)-methyltransferase)chromosome CDS1045574 1317 + 0.454822
selB plu4898 selenocysteine-specific elongation factor (SelB translation factor)chromosome CDS5674296 1860 + 0.46828
serS plu1604 seryl-tRNA synthetase (serine--tRNA ligase) (SERRS)chromosome CDS1915325 1290 + 0.449612
smpA plu3375 Small protein A precursorchromosome CDS4004248 348 + 0.439655
speG plu2762 spermidine N1-acetyltransferase (diamine acetyltransferase)chromosome CDS3272370 567 + 0.428571
srmB plu3349 ATP-dependent RNA helicasechromosome CDS3976851 1338 + 0.46562
tgt plu3904 Queuine tRNA-ribosyltransferase (tRNA-guanine transglycosylase) (Guanine insertion enzyme)chromosome CDS4575837 1125 - 0.449778
thrS plu2669 threonyl-tRNA synthetase (threonine--tRNA ligase)chromosome CDS3122265 1929 - 0.439088
trmA plu4736 tRNA (Uracil-5-)-methyltransferasechromosome CDS5514156 1101 + 0.404178
trmD plu1259 tRNA (guanine-N1-)-methyltransferase (M1G-methyltransferase)chromosome CDS1456922 753 + 0.486056
trmU plu2804 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS3329111 1104 + 0.455616
trpS plu0084 tryptophanyl-tRNA synthetase (tryptophan--tRNA ligase) (TRPRS)chromosome CDS79372 1038 - 0.45183
truA plu3173 tRNA pseudouridine synthase A (Pseudouridylate synthase I) (Pseudouridine synthase I) (Uracil hydrolyase) (PSU-I)chromosome CDS3733092 840 - 0.458333
truB plu4527 tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase) (Psi55 synthase) (pseudouridylate synthase) (uracil hydrolyase) (P35 protein)chromosome CDS5287383 948 - 0.42827
tsf plu0673 elongation factor EF-Tschromosome CDS773232 852 + 0.448357
tufA plu4730 elongation factor Tu (EF-Tu)chromosome CDS5500355 1185 - 0.511392
tufB plu0432 translation elongation factor EF-Tu.Bchromosome CDS459158 1185 + 0.511392
tyrS plu2596 tyrosine-tRNA synthetase (tyrosine--tRNA ligase) (TYRRS)chromosome CDS3038923 1275 - 0.443922
valS plu4483 valyl-tRNA synthetase (valine--tRNA ligase) (VALRS)chromosome CDS5235451 2898 + 0.461353
wblY plu4824 WblY proteinchromosome CDS5601139 678 + 0.30531