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2024-05-17 05:19:59

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Mycoplasma mycoides subsp. mycoides SC str. PG1, PG1

Number of genes found: 115

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Mycoplasma mycoides subsp. mycoides SC str. PG1, PG1
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA MSC_0068 Transcriptional regulator (involved in nitrogen regulation; NifR3 familyRecName: Full=tRNA-dihydrouridine synthase; EC=1.-.-.-; chromosome CDS77429 975 + 0.285128
NA MSC_0795 translation initiation inhibitorSubName: Full=Translation initiation inhibitor; chromosome CDS896181 402 + 0.251244
NA MSC_0350 Conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS399265 300 - 0.22
NA MSC_0561 Conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS635940 315 - 0.228571
NA MSC_0807 translation initiation inhibitorSubName: Full=Translation initiation inhibitor; chromosome CDS912120 402 + 0.251244
NA MSC_0539 Conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS613195 1827 + 0.229338
NA MSC_0574 Conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS646625 717 - 0.292887
NA MSC_0153 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS177091 501 + 0.195609
NA MSC_0914 GTP-BINDING PROTEINRecName: Full=Ribosome-binding ATPase YchF; chromosome CDS1037875 1095 + 0.268493
NA MSC_1034 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1177878 363 + 0.236915
alaS MSC_0178 alanine-tRNA ligaseRecName: Full=Alanine--tRNA ligase; EC=6.1.1.7; AltName: Full=Alanyl-tRNA synthetase; Short=AlaRS; chromosome CDS207226 2691 - 0.242289
argS MSC_0599 arginine-tRNA ligaseRecName: Full=Arginine--tRNA ligase; EC=6.1.1.19; AltName: Full=Arginyl-tRNA synthetase; Short=ArgRS; chromosome CDS679945 1665 - 0.236637
asnS MSC_0080 asparagine-tRNA ligaseRecName: Full=Asparagine--tRNA ligase; EC=6.1.1.22; AltName: Full=Asparaginyl-tRNA synthetase; Short=AsnRS; chromosome CDS98313 1359 - 0.281825
aspS MSC_0432 Aspartate-tRNA ligaseSubName: Full=Aspartate-tRNA ligase; EC=6.1.1.12; chromosome CDS486528 303 - 0.280528
aspS MSC_0333 aspartate-tRNA ligaseRecName: Full=Aspartate--tRNA ligase; EC=6.1.1.12; AltName: Full=Aspartyl-tRNA synthetase; Short=AspRS; chromosome CDS381862 1725 - 0.242899
codA MSC_0049 CYTOSINE DEAMINASESubName: Full=CYTOSINE DEAMINASE; EC=3.5.4.1; chromosome CDS59379 468 - 0.205128
cysS MSC_0959 cysteine-tRNA ligaseRecName: Full=Cysteine--tRNA ligase; EC=6.1.1.16; AltName: Full=Cysteinyl-tRNA synthetase; Short=CysRS; chromosome CDS1087858 1326 + 0.20362
deaD MSC_0469 ATP-dependent RNA helicaseSubName: Full=ATP-dependent RNA helicase; chromosome CDS531597 1362 + 0.202643
efp MSC_0451 Elongation factor PRecName: Full=Elongation factor P; Short=EF-P; chromosome CDS506544 555 + 0.299099
fmt MSC_0450 methionyl-tRNA formyltransferaseRecName: Full=Methionyl-tRNA formyltransferase; EC=2.1.2.9; chromosome CDS505504 954 + 0.234801
frr MSC_0600 ribosome recycling factorRecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor; chromosome CDS681611 549 - 0.256831
fusA MSC_0159 Translation elongation factor GRecName: Full=Elongation factor G; Short=EF-G; chromosome CDS182205 2070 + 0.32029
gatA MSC_0762 glutamyl-tRNA (Gln) amidotransferase subunit ASubName: Full=Glutamyl-tRNA (Gln) amidotransferase subunit A; EC=6.3.5.-; chromosome CDS857654 1458 - 0.262689
gatB MSC_0761 glutamyl-tRNA (Gln) amidotransferase subunit BRecName: Full=Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Short=Asp/Glu-ADT subunit B; EC=6.3.5.-; chromosome CDS856213 1473 - 0.232858
gatC MSC_0763 Glutamyl-tRNA (Gln) amidotransferase, subunit CSubName: Full=Glutamyl-tRNA (Gln) amidotransferase, subunit C; EC=6.3.5.-; chromosome CDS859111 297 - 0.259259
gid MSC_0494 glucose inhibited division proteinRecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO 2; EC=2.1.1.74; AltName: Full=Folate-dependent tRNA (uracil-5-)-methyltransferase 2; AltName: Full=Folate-dependent tRNA(M-5-U54)-methyltransferase 2; chromosome CDS559984 1317 + 0.247532
gidA MSC_0375 glucose-inhibited division proteinRecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO 1; EC=2.1.1.74; AltName: Full=Folate-dependent tRNA (uracil-5-)-methyltransferase 1; AltName: Full=Folate-dependent tRNA(M-5-U54)-methyltransferase 1; chromosome CDS426682 1275 - 0.192941
gltX MSC_0131 glutamate-tRNA ligaseRecName: Full=Glutamate--tRNA ligase; EC=6.1.1.17; AltName: Full=Glutamyl-tRNA synthetase; Short=GluRS; chromosome CDS153850 1452 + 0.232094
glyS MSC_0464 glycine-tRNA ligaseRecName: Full=Glycine--tRNA ligase; EC=6.1.1.14; AltName: Full=Glycyl-tRNA synthetase; Short=GlyRS; chromosome CDS525382 1371 + 0.2531
hemK MSC_0151 protoporphyrinogen oxidaseRecName: Full=Release factor glutamine methyltransferase; Short=RF MTase; EC=2.1.1.297; AltName: Full=N5-glutamine methyltransferase PrmC; AltName: Full=Protein-(glutamine-N5) MTase PrmC; AltName: Full=Protein-glutamine N-methyltransferase PrmC; chromosome CDS174753 849 + 0.183746
hisS MSC_0334 histidine-tRNA ligaseRecName: Full=Histidine--tRNA ligase; EC=6.1.1.21; AltName: Full=Histidyl-tRNA synthetase; Short=HisRS; chromosome CDS383595 1245 - 0.226506
hlyA MSC_0099 hemolysin ASubName: Full=Hemolysin A; chromosome CDS119428 450 - 0.235556
ileS MSC_0585 isoleucine-tRNA ligaseRecName: Full=Isoleucine--tRNA ligase; EC=6.1.1.5; AltName: Full=Isoleucyl-tRNA synthetase; Short=IleRS; chromosome CDS656716 2748 - 0.235808
infB MSC_0349 translation initiation factor IF-2RecName: Full=Translation initiation factor IF-2; chromosome CDS397381 1863 - 0.275899
infC MSC_0221 translation initiation factor IF-3RecName: Full=Translation initiation factor IF-3; chromosome CDS254049 546 + 0.267399
ksgA MSC_0004 Dimethyladenosine transferase KsgARecName: Full=Ribosomal RNA small subunit methyltransferase A; EC=2.1.1.182; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N, N-adenosyl(rRNA) dimethyltransferase; chromosome CDS3299 801 + 0.207241
leuS MSC_0709 leucine-tRNA ligaseRecName: Full=Leucine--tRNA ligase; EC=6.1.1.4; AltName: Full=Leucyl-tRNA synthetase; Short=LeuRS; chromosome CDS811724 2433 - 0.261406
lpp MSC_1058 Putative variable prolipoproteinSubName: Full=Putative variable prolipoprotein; chromosome CDS1201579 426 + 0.253521
lysS MSC_0069 Lysine-tRNA ligaseRecName: Full=Lysine--tRNA ligase; EC=6.1.1.6; AltName: Full=Lysyl-tRNA synthetase; Short=LysRS; chromosome CDS78406 1503 + 0.273453
map MSC_0724 methionyl aminopeptidaseRecName: Full=Methionine aminopeptidase; Short=MAP; Short=MetAP; EC=3.4.11.18; AltName: Full=Peptidase M; chromosome CDS831160 756 - 0.292328
metS MSC_0012 Methionine-tRNA ligaseRecName: Full=Methionine--tRNA ligase; EC=6.1.1.10; AltName: Full=Methionyl-tRNA synthetase; chromosome CDS17078 1530 - 0.232026
pdf MSC_0220 Peptide deformylaseRecName: Full=Peptide deformylase; Short=PDF; EC=3.5.1.88; AltName: Full=Polypeptide deformylase; chromosome CDS253257 603 + 0.232172
pheS MSC_0596 Phenylalanine-tRNA ligase alpha subunitRecName: Full=Phenylalanine--tRNA ligase alpha subunit; EC=6.1.1.20; AltName: Full=Phenylalanyl-tRNA synthetase alpha subunit; Short=PheRS; chromosome CDS668635 1053 - 0.220323
prfA MSC_0150 peptide chain release factor 1RecName: Full=Peptide chain release factor 1; Short=RF-1; chromosome CDS173666 1095 + 0.287671
proS MSC_0327 proline-tRNA ligaseRecName: Full=Proline--tRNA ligase; EC=6.1.1.15; AltName: Full=Prolyl-tRNA synthetase; Short=ProRS; chromosome CDS374354 1425 + 0.244912
pth MSC_0954 Peptidyl-tRNA hydrolaseRecName: Full=Peptidyl-tRNA hydrolase; Short=PTH; EC=3.1.1.29; chromosome CDS1082969 561 + 0.196078
rbfA MSC_0335 Ribosome-binding factor ASubName: Full=Ribosome-binding factor A; chromosome CDS385024 354 + 0.223164
rimM MSC_0426 16S RRNA PROCESSING PROTEIN RIMMRecName: Full=Ribosome maturation factor RimM; chromosome CDS481354 489 + 0.177914
rluB MSC_0387 Ribosomal large subunit pseudouridine synthase BSubName: Full=Ribosomal large subunit pseudouridine synthase B; EC=4.2.1.70; chromosome CDS439673 342 + 0.233918
rluC MSC_0766 RNA pseudouridylate synthaseSubName: Full=RNA pseudouridylate synthase; EC=4.2.1.70; chromosome CDS863443 909 - 0.190319
rluD MSC_0583 ribosomal large subunit pseudouridylate synthase DRecName: Full=Pseudouridine synthase; EC=5.4.99.-; chromosome CDS655204 933 - 0.239014
rnpA MSC_1067 Ribonuclease P (protein C5)RecName: Full=Ribonuclease P protein component; Short=RNase P protein; Short=RNaseP protein; EC=3.1.26.5; AltName: Full=Protein C5; chromosome CDS1211028 330 - 0.178788
rplA MSC_0995 50S ribosomal protein L1RecName: Full=50S ribosomal protein L1; chromosome CDS1133962 681 + 0.286344
rplB MSC_0742 50S RIBOSOMAL PROTEIN L2RecName: Full=50S ribosomal protein L2; chromosome CDS840656 849 - 0.328622
rplC MSC_0745 50S RIBOSOMAL PROTEIN L3RecName: Full=50S ribosomal protein L3; chromosome CDS842482 672 - 0.316964
rplD MSC_0744 50S RIBOSOMAL PROTEIN L4RecName: Full=50S ribosomal protein L4; chromosome CDS841843 627 - 0.298246
rplE MSC_0732 50S RIBOSOMAL PROTEIN L5RecName: Full=50S ribosomal protein L5; chromosome CDS836916 543 - 0.27256
rplF MSC_0730 50S RIBOSOMAL PROTEIN L6RecName: Full=50S ribosomal protein L6; chromosome CDS835747 543 - 0.28361
rplI MSC_0955 50S ribosomal protein L9RecName: Full=50S ribosomal protein L9; chromosome CDS1083641 471 + 0.225053
rplJ MSC_1006 50S RIBOSOMAL PROTEIN L10RecName: Full=50S ribosomal protein L10; chromosome CDS1144562 498 + 0.309237
rplK MSC_0994 50S Ribosomal protein L11RecName: Full=50S ribosomal protein L11; chromosome CDS1133534 429 + 0.321678
rplL MSC_1007 50S ribosomal protein L7/L12RecName: Full=50S ribosomal protein L7/L12; chromosome CDS1145128 369 + 0.336043
rplM MSC_0713 50S RIBOSOMAL PROTEIN L13RecName: Full=50S ribosomal protein L13; chromosome CDS817786 456 - 0.296053
rplN MSC_0735 50S RIBOSOMAL PROTEIN L14RecName: Full=50S ribosomal protein L14; chromosome CDS837817 369 - 0.330623
rplO MSC_0727 50S RIBOSOMAL PROTEIN L15RecName: Full=50S ribosomal protein L15; chromosome CDS834132 438 - 0.305936
rplP MSC_0738 50S RIBOSOMAL PROTEIN L16RecName: Full=50S ribosomal protein L16; chromosome CDS838874 414 - 0.335749
rplQ MSC_0720 50S ribosomal protein L17RecName: Full=50S ribosomal protein L17; chromosome CDS828589 360 - 0.297222
rplR MSC_0729 50S RIBOSOMAL PROTEIN L18RecName: Full=50S ribosomal protein L18; chromosome CDS835371 351 - 0.279202
rplS MSC_0428 50S RIBOSOMAL PROTEIN L19RecName: Full=50S ribosomal protein L19; chromosome CDS482568 393 + 0.272265
rplT MSC_0223 50S ribosomal protein L20RecName: Full=50S ribosomal protein L20; chromosome CDS254830 366 + 0.270492
rplU MSC_0562 50S ribosomal protein L21RecName: Full=50S ribosomal protein L21; chromosome CDS636257 303 - 0.264026
rplV MSC_0740 50S RIBOSOMAL PROTEIN L22RecName: Full=50S ribosomal protein L22; chromosome CDS840009 336 - 0.28869
rplW MSC_0743 50S RIBOSOMAL PROTEIN L23RecName: Full=50S ribosomal protein L23; chromosome CDS841559 285 - 0.25614
rplX MSC_0734 50S RIBOSOMAL PROTEIN L24RecName: Full=50S ribosomal protein L24; chromosome CDS837477 327 - 0.281346
rpmA MSC_0560 50S RIBOSOMAL PROTEI L27RecName: Full=50S ribosomal protein L27; chromosome CDS635657 282 - 0.312057
rpmB MSC_0483 50S RIBOSOMAL PROTEIN L28RecName: Full=50S ribosomal protein L28; chromosome CDS549831 207 + 0.289855
rpmC MSC_0737 50S RIBOSOMAL PROTEIN L29SubName: Full=50S RIBOSOMAL PROTEIN L29; chromosome CDS838458 417 - 0.294964
rpmF MSC_0593 50S ribosomal protein L32RecName: Full=50S ribosomal protein L32; chromosome CDS665530 180 - 0.316667
rpmH MSC_1068 50S RIBOSOMAL PROTEIN L34RecName: Full=50S ribosomal protein L34; chromosome CDS1211364 171 - 0.327485
rpmI MSC_0222 50S ribosomal protein L35RecName: Full=50S ribosomal protein L35; chromosome CDS254620 192 + 0.296875
rpme MSC_0146 50S ribosomal protein L31RecName: Full=50S ribosomal protein L31; chromosome CDS169823 279 + 0.301075
rpsB MSC_0608 30S ribosomal protein S2SubName: Full=30S ribosomal protein S2; chromosome CDS690847 387 - 0.245478
rpsC MSC_0739 30S RIBOSOMAL PROTEIN S3RecName: Full=30S ribosomal protein S3; chromosome CDS839290 702 - 0.293447
rpsD MSC_0278 30S ribosomal protein S4RecName: Full=30S ribosomal protein S4; chromosome CDS316961 627 - 0.266348
rpsE MSC_0728 30S ribosomal protein S5RecName: Full=30S ribosomal protein S5; chromosome CDS834588 765 - 0.303268
rpsF MSC_0027 30S ribosomal protein S6RecName: Full=30S ribosomal protein S6; chromosome CDS30877 414 - 0.246377
rpsG MSC_0158 30S ribosomal protein S7RecName: Full=30S ribosomal protein S7; chromosome CDS181713 468 + 0.273504
rpsH MSC_0731 Ribosomal protein S8RecName: Full=30S ribosomal protein S8; chromosome CDS836303 486 - 0.304527
rpsI MSC_0712 30S RIBOSOMAL PROTEIN S9RecName: Full=30S ribosomal protein S9; chromosome CDS817388 399 - 0.325815
rpsJ MSC_0746 30S RIBOSOMAL PROTEIN S10RecName: Full=30S ribosomal protein S10; chromosome CDS843229 309 - 0.320388
rpsK MSC_0722 30S RIBOSOMAL PROTEIN S11RecName: Full=30S ribosomal protein S11; chromosome CDS829925 390 - 0.364103
rpsL MSC_0157 30S ribosomal protein S12RecName: Full=30S ribosomal protein S12; chromosome CDS181189 438 + 0.351598
rpsM MSC_0723 30S RIBOSOMAL PROTEIN S13RecName: Full=30S ribosomal protein S13; chromosome CDS830340 366 - 0.295082
rpsO MSC_0347 30S ribosomal protein S15RecName: Full=30S ribosomal protein S15; chromosome CDS396220 267 + 0.250936
rpsP MSC_0425 30S RIBOSOMAL PROTEIN S16RecName: Full=30S ribosomal protein S16; chromosome CDS481010 327 + 0.253823
rpsQ MSC_0736 30S RIBOSOMAL PROTEIN S17RecName: Full=30S ribosomal protein S17; chromosome CDS838201 258 - 0.25969
rpsR MSC_0025 30S ribosomal protein S18RecName: Full=30S ribosomal protein S18; chromosome CDS30178 228 - 0.25
rpsS MSC_0741 30S RIBOSOMAL PROTEIN S19RecName: Full=30S ribosomal protein S19; chromosome CDS840368 267 - 0.310861
rpsT MSC_0086 30S ribosomal protein S20RecName: Full=30S ribosomal protein S20; chromosome CDS104566 300 - 0.25
rpsU MSC_0541 30S ribosomal protein S21SubName: Full=30S ribosomal protein S21; chromosome CDS615870 183 + 0.295082
serS MSC_0066 Serine-tRNA ligaseRecName: Full=Serine--tRNA ligase; EC=6.1.1.11; AltName: Full=Seryl-tRNA synthetase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec) synthetase; chromosome CDS75743 1269 + 0.256107
spoU MSC_0615 rRNA Methylase (Spou-family)RecName: Full=Putative tRNA (cytidine(34)-2-O)-methyltransferase; EC=2.1.1.207; AltName: Full=tRNA (cytidine/uridine-2-O-)-methyltransferase; chromosome CDS699253 546 - 0.250916
spoU MSC_0960 rRNA MethylaseSubName: Full=rRNA Methylase; EC=2.1.1.-; chromosome CDS1089185 735 + 0.209524
spoU MSC_0508 rRNA methylaseSubName: Full=rRNA methylase; EC=2.1.1.-; chromosome CDS576339 768 + 0.25651
sun MSC_0217 Sun family proteinSubName: Full=Sun family protein; EC=2.1.1.-; chromosome CDS250469 1299 - 0.197075
thrS MSC_0262 threonine-tRNA ligaseRecName: Full=Threonine--tRNA ligase; EC=6.1.1.3; AltName: Full=Threonyl-tRNA synthetase; chromosome CDS298293 1920 + 0.238542
trmD MSC_0427 tRNA (guanine-N1)-methyltransferaseRecName: Full=tRNA (guanine-N(1)-)-methyltransferase; EC=2.1.1.228; AltName: Full=M1G-methyltransferase; AltName: Full=tRNA [GM37] methyltransferase; chromosome CDS481844 723 + 0.24343
trmU MSC_0447 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferaseRecName: Full=tRNA-specific 2-thiouridylase MnmA; EC=2.8.1.-; chromosome CDS501506 1128 + 0.230496
trpS MSC_0358 tryptophan-tRNA ligaseRecName: Full=Tryptophan--tRNA ligase; EC=6.1.1.2; AltName: Full=Tryptophanyl-tRNA synthetase; chromosome CDS409750 1011 + 0.248269
truA MSC_0715 pseudouridylate synthase IRecName: Full=tRNA pseudouridine synthase A; EC=5.4.99.12; AltName: Full=tRNA pseudouridine(38-40) synthase; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I; chromosome CDS822611 756 - 0.21164
truB MSC_0336 tRNA pseudouridine synthase BRecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.25; AltName: Full=tRNA pseudouridine(55) synthase; Short=Psi55 synthase; AltName: Full=tRNA pseudouridylate synthase; AltName: Full=tRNA-uridine isomerase; chromosome CDS385427 879 + 0.201365
tsf MSC_0607 Elongation factor TSRecName: Full=Elongation factor Ts; Short=EF-Ts; chromosome CDS689457 888 - 0.268018
tufA MSC_0160 translation elongation factor TuRecName: Full=Elongation factor Tu; Short=EF-Tu; chromosome CDS184406 1188 + 0.357744
tyrS MSC_0686 tyrosine-tRNA ligaseRecName: Full=Tyrosine--tRNA ligase; EC=6.1.1.1; AltName: Full=Tyrosyl-tRNA synthetase; Short=TyrRS; chromosome CDS789488 1245 - 0.234538
valS MSC_0303 valine-tRNA ligaseRecName: Full=Valine--tRNA ligase; EC=6.1.1.9; AltName: Full=Valyl-tRNA synthetase; Short=ValRS; chromosome CDS344889 2619 - 0.221077