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2024-05-09 03:09:36

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Vibrio cholerae O1 biovar eltor str. N16961, N16961

Number of genes found: 192

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Vibrio cholerae O1 biovar eltor str. N16961, N16961
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
VC0006 ribonuclease P protein componentchromosome I CDS4123 357 - 0.448179
VC0007 ribosomal protein L34chromosome I CDS4492 138 - 0.5
VC0020 glycyl-tRNA synthetase, beta chainchromosome I CDS16869 2067 - 0.520561
VC0021 glycyl-tRNA synthetase, alpha chainchromosome I CDS18950 993 - 0.499496
VC0044 sun proteinchromosome I CDS41998 1305 - 0.544061
VC0045 methionyl-tRNA formyltransferasechromosome I CDS43334 948 - 0.514768
VC0046 polypeptide deformylasechromosome I CDS44299 510 - 0.480392
VC0054 Sua5/YciO/YrdC family proteinchromosome I CDS50104 567 + 0.536155
VC0154 tRNA (uracil-5-)-methyltransferasechromosome I CDS143863 1110 - 0.478378
VC0210 ribonuclease PHchromosome I CDS217531 774 + 0.52584
VC0218 ribosomal protein L28chromosome I CDS226229 237 + 0.447257
VC0219 ribosomal protein L33chromosome I CDS226479 168 + 0.428571
VC0264 conserved hypothetical proteinchromosome I CDS269068 1368 + 0.551901
VC0291 NifR3/Smm1 family proteinchromosome I CDS300209 996 - 0.498996
VC0293 ribosomal protein L11 methyltransferasechromosome I CDS301317 888 - 0.536036
VC0305 ATP-dependent RNA helicase RhlBchromosome I CDS316344 1317 - 0.509491
VC0321 elongation factor Tuchromosome I CDS335326 1185 + 0.490295
VC0324 ribosomal protein L11chromosome I CDS337809 429 + 0.475524
VC0325 ribosomal protein L1chromosome I CDS338242 702 + 0.480057
VC0326 ribosomal protein L10chromosome I CDS339213 489 + 0.480573
VC0327 ribosomal protein L7/L12chromosome I CDS339768 366 + 0.45082
VC0346 tRNA delta(2)-isopentenylpyrophosphate transferasechromosome I CDS369030 948 + 0.488397
VC0359 ribosomal protein S12chromosome I CDS378505 375 + 0.464
VC0360 ribosomal protein S7chromosome I CDS378995 471 + 0.462845
VC0361 elongation factor Gchromosome I CDS379541 2097 + 0.477349
VC0362 elongation factor TUchromosome I CDS381760 1185 + 0.491139
VC0366 ribosomal protein S6chromosome I CDS384193 369 + 0.468835
VC0368 ribosomal protein S18chromosome I CDS384887 228 + 0.451754
VC0369 ribosomal protein L9chromosome I CDS385148 450 + 0.46
VC0379 NifR3/Smm1 family proteinchromosome I CDS394329 984 + 0.505081
VC0419 cytoplasmic axial filament proteinchromosome I CDS445206 1470 + 0.493878
VC0435 ribosomal protein L21chromosome I CDS466449 312 + 0.435897
VC0436 ribosomal protein L27chromosome I CDS466781 261 + 0.444444
VC0443 dimethyladenosine transferasechromosome I CDS471723 849 - 0.477032
VC0465 tyrosyl-tRNA synthetasechromosome I CDS494454 1305 + 0.508812
VC0468 glutathione synthetasechromosome I CDS496898 957 - 0.493208
VC0520 ribosomal protein S21chromosome I CDS554708 216 - 0.50463
VC0545 alanyl-tRNA synthetasechromosome I CDS576524 2583 + 0.506001
VC0561 ribosomal protein S16chromosome I CDS596286 249 + 0.493976
VC0562 16S rRNA processing protein RimMchromosome I CDS596562 555 + 0.443243
VC0563 tRNA (guanine-N1)-methyltransferasechromosome I CDS597144 744 + 0.495968
VC0564 ribosomal protein L19chromosome I CDS597929 354 + 0.466102
VC0570 ribosomal protein L13chromosome I CDS603055 429 + 0.456876
VC0571 ribosomal protein S9chromosome I CDS603499 393 + 0.486005
VC0594 polyA polymerasechromosome I CDS620872 1374 - 0.518195
VC0595 glutamyl-tRNA synthetase-related proteinchromosome I CDS622336 915 - 0.504918
VC0623 conserved hypothetical proteinchromosome I CDS661831 1023 - 0.478983
VC0631 tyrosyl-tRNA synthetasechromosome I CDS672030 1188 + 0.475589
VC0635 conserved hypothetical proteinchromosome I CDS676958 297 - 0.434343
VC0636 cell division protein FtsJchromosome I CDS677374 630 + 0.449206
VC0643 initiation factor IF-2chromosome I CDS685337 2697 + 0.493511
VC0644 ribosome-binding factor Achromosome I CDS688123 411 + 0.486618
VC0645 tRNA pseudouridine 55 synthasechromosome I CDS688533 939 + 0.518637
VC0646 ribosomal protein S15chromosome I CDS689613 270 + 0.477778
VC0647 polyribonucleotide nucleotidyltransferasechromosome I CDS690245 2130 + 0.497653
VC0659 peptide chain release factor 3chromosome I CDS703870 1596 + 0.50188
VC0660 ATP-dependent RNA helicase SrmBchromosome I CDS705587 1272 - 0.516509
VC0664 lysyl-tRNA synthetase, heat induciblechromosome I CDS710583 1539 + 0.497076
VC0679 ribosomal protein S20chromosome I CDS725539 261 - 0.475096
VC0682 isoleucyl-tRNA synthetasechromosome I CDS728687 2850 + 0.503158
VC0706 sigma-54 modulation protein, putativechromosome I CDS756243 327 - 0.431193
VC0709 ribosomal large subunit pseudouridine synthase Dchromosome I CDS757851 975 + 0.50359
VC0739 S-adenosylmethionine:tRNAribosyltransferase-isom erasechromosome I CDS792954 1059 + 0.500472
VC0741 queuine tRNA-ribosyltransferasechromosome I CDS794241 1140 + 0.475439
VC0746 RNA methyltransferase, TrmH familychromosome I CDS799804 735 + 0.508844
VC0760 histidyl-tRNA synthetasechromosome I CDS812244 1269 + 0.496454
VC0803 RNA methyltransferase, TrmH familychromosome I CDS859267 774 + 0.523256
VC0851 small protein Achromosome I CDS916215 411 - 0.450122
VC0864 yfhC proteinchromosome I CDS929010 582 + 0.487972
VC0875 prolyl-tRNA synthetasechromosome I CDS937854 1716 - 0.509907
VC0878 ribosomal protein, L31P familychromosome I CDS940625 258 + 0.453488
VC0879 ribosomal protein L36, putativechromosome I CDS940879 126 + 0.460317
VC0884 acetyltransferase-related proteinchromosome I CDS944367 624 + 0.480769
VC0888 pseudouridine synthase Rlu family proteinchromosome I CDS946691 735 + 0.504762
VC0956 leucyl-tRNA synthetasechromosome I CDS1018821 2685 - 0.49162
VC0962 conserved hypothetical proteinchromosome I CDS1026188 1425 - 0.500351
VC0997 glutaminyl-tRNA synthetasechromosome I CDS1063143 1671 + 0.465589
VC0999 tRNA pseudouridine synthase Achromosome I CDS1069965 795 + 0.508176
VC1036 methionyl-tRNA synthetasechromosome I CDS1102361 2196 - 0.488616
VC1079 conserved hypothetical proteinchromosome I CDS1146259 990 - 0.541414
VC1105 conserved hypothetical proteinchromosome I CDS1175203 972 - 0.509259
VC1110 seryl-tRNA synthetasechromosome I CDS1179130 1308 + 0.494648
VC1128 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome I CDS1195435 1119 - 0.476318
VC1140 pseudouridine synthase family 1 proteinchromosome I CDS1208619 873 - 0.476518
VC1160 hypothetical proteinchromosome I CDS1231651 990 - 0.511111
VC1166 aspartyl-tRNA synthetasechromosome I CDS1238124 1776 + 0.501689
VC1178 conserved hypothetical proteinchromosome I CDS1250109 621 + 0.504026
VC1179 pseudouridine synthase family 1 proteinchromosome I CDS1250862 966 + 0.518634
VC1209 elongation factor P family proteinchromosome I CDS1284104 600 - 0.441667
VC1219 phenylalanyl-tRNA synthetase, alpha chainchromosome I CDS1296440 984 + 0.502033
VC1297 asparaginyl-tRNA synthetasechromosome I CDS1375995 1446 - 0.493776
VC1309 ribosomal-protein-alanine acetyltransferasechromosome I CDS1391516 576 + 0.453125
VC1407 ATP-dependent RNA helicase RhlEchromosome I CDS1499666 1194 + 0.48995
VC1484 ribosome modulation factorchromosome I CDS1589026 174 - 0.454023
VC1556 conserved hypothetical proteinchromosome I CDS1667625 363 - 0.520661
VC1635 ribosomal small subunit pseudouridine synthase Achromosome I CDS1760983 696 - 0.479885
VC1640 ribosomal protein L25chromosome I CDS1766460 279 + 0.480287
VC1668 pseudouridine synthase Rlu family proteinchromosome I CDS1799619 708 - 0.480226
VC1711 conserved hypothetical proteinchromosome I CDS1845545 2370 + 0.508017
VC1737 initiation factor IF-1chromosome I CDS1873592 219 + 0.438356
VC1848 cysteinyl-tRNA synthetasechromosome I CDS1987276 1380 - 0.465942
VC1889 ribosomal-protein-serine acetyltransferase, putativechromosome I CDS2037545 537 + 0.463687
VC1910 tRNA-(MS[2]IO[6]A)-hydroxylasechromosome I CDS2060044 777 + 0.431145
VC1915 ribosomal protein S1chromosome I CDS2063813 1671 - 0.464393
VC1984 ribonuclease Dchromosome I CDS2135870 1146 - 0.500873
VC1995 L-asparaginase Ichromosome I CDS2149035 1014 + 0.495069
VC2005 hypothetical proteinchromosome I CDS2157848 357 + 0.478992
VC2025 ribosomal protein L32chromosome I CDS2178326 171 - 0.48538
VC2028 ribosomal large subunit pseudouridine synthase Cchromosome I CDS2179885 948 - 0.489451
VC2030 ribonuclease Echromosome I CDS2181444 3159 + 0.502058
VC2074 arginyl-tRNA synthetasechromosome I CDS2230919 1800 + 0.486667
VC2118 adenine-specific methylase, putativechromosome I CDS2273537 945 - 0.493122
VC2178 hemK proteinchromosome I CDS2322906 861 - 0.519164
VC2179 peptide chain release factor 1chromosome I CDS2323770 1089 - 0.503214
VC2184 peptidyl-tRNA hydrolasechromosome I CDS2328936 591 + 0.482233
VC2185 GTP-binding proteinchromosome I CDS2329477 1152 + 0.481771
VC2214 glutamyl-tRNA synthetasechromosome I CDS2366554 1530 - 0.484967
VC2223 pseudouridine synthase family 1 proteinchromosome I CDS2376860 1023 + 0.474096
VC2257 ribosome recycling factorchromosome I CDS2412887 558 - 0.473118
VC2259 elongation factor Tschromosome I CDS2414417 843 - 0.481613
VC2260 ribosomal protein S2chromosome I CDS2415391 729 - 0.473251
VC2261 methionine aminopeptidasechromosome I CDS2416460 843 + 0.468565
VC2281 ribosomal protein S6 modification proteinchromosome I CDS2436201 906 + 0.502208
VC2297 conserved hypothetical proteinchromosome I CDS2451622 1251 + 0.453237
VC2333 ribosomal protein S6 modification protein-related proteinchromosome I CDS2482789 1452 + 0.491047
VC2342 elongation factor Gchromosome I CDS2495396 2088 - 0.471264
VC2446 tRNA nucleotidyltransferasechromosome I CDS2625303 1212 + 0.542904
VC2452 TrmA family RNA methyltransferase, putativechromosome I CDS2633103 1323 - 0.504157
VC2503 valyl-tRNA synthetasechromosome I CDS2688698 2862 + 0.507687
VC2505 ribosomal large subunit pseudouridine synthase Achromosome I CDS2692654 738 - 0.49729
VC2512 conserved hypothetical proteinchromosome I CDS2701112 390 + 0.505128
VC2530 sigma-54 modulation protein, putativechromosome I CDS2713398 288 + 0.409722
VC2564 ATP-dependent RNA helicase DbpAchromosome I CDS2746119 1383 - 0.505423
VC2570 ribosomal protein L17chromosome I CDS2751112 387 - 0.490956
VC2572 ribosomal protein S4chromosome I CDS2752542 621 - 0.465378
VC2573 ribosomal protein S11chromosome I CDS2753190 390 - 0.502564
VC2574 ribosomal protein S13chromosome I CDS2753599 357 - 0.473389
VC2575 ribosomal protein L36chromosome I CDS2754105 114 - 0.45614
VC2577 ribosomal protein L15chromosome I CDS2755612 435 - 0.468966
VC2578 ribosomal protein L30chromosome I CDS2756052 177 - 0.412429
VC2579 ribosomal protein S5chromosome I CDS2756235 504 - 0.462302
VC2580 ribosomal protein L18chromosome I CDS2756753 354 - 0.5
VC2581 ribosomal protein L6chromosome I CDS2757116 534 - 0.477528
VC2582 ribosomal protein S8chromosome I CDS2757664 393 - 0.46056
VC2583 ribosomal protein S14chromosome I CDS2758086 306 - 0.46732
VC2584 ribosomal protein L5chromosome I CDS2758409 540 - 0.477778
VC2585 ribosomal protein L24chromosome I CDS2758973 318 - 0.41195
VC2586 ribosomal protein L14chromosome I CDS2759303 372 - 0.473118
VC2587 ribosomal protein S17chromosome I CDS2759837 255 - 0.439216
VC2588 ribosomal protein L29chromosome I CDS2760091 192 - 0.463542
VC2589 ribosomal protein L16chromosome I CDS2760282 411 - 0.476886
VC2590 ribosomal protein S3chromosome I CDS2760704 702 - 0.5
VC2591 ribosomal protein L22chromosome I CDS2761425 333 - 0.471471
VC2592 ribosomal protein S19chromosome I CDS2761768 279 - 0.451613
VC2593 ribosomal protein L2chromosome I CDS2762067 825 - 0.513939
VC2594 ribosomal protein L23chromosome I CDS2762908 303 - 0.435644
VC2595 ribosomal protein L4chromosome I CDS2763207 603 - 0.466003
VC2596 ribosomal protein L3chromosome I CDS2763826 630 - 0.471429
VC2597 ribosomal protein S10chromosome I CDS2764470 312 - 0.467949
VC2598 RNA methyltransferase, TrmH familychromosome I CDS2765252 744 - 0.524194
VC2620 conserved hypothetical proteinchromosome I CDS2788972 1413 + 0.505308
VC2623 tryptophanyl-tRNA synthetasechromosome I CDS2794267 1098 - 0.48816
VC2655 lysyl-tRNA synthetase-related proteinchromosome I CDS2825469 1050 - 0.486667
VC2660 elongation factor Pchromosome I CDS2830191 567 - 0.474427
VC2679 ribosomal protein L31chromosome I CDS2847810 219 + 0.47032
VC2695 rRNA methylase, SpoU familychromosome I CDS2862688 477 + 0.51782
VC2735 conserved hypothetical proteinchromosome I CDS2908386 384 + 0.505208
VC2741 conserved hypothetical proteinchromosome I CDS2914757 435 - 0.510345
VCA0028 hypothetical proteinchromosome II CDS35606 255 - 0.45098
VCA0061 ATP-dependent RNA helicase, DEAD box familychromosome II CDS67304 1359 + 0.479765
VCA0104 ribosomal large subunit pseudouridine synthase Achromosome II CDS112691 666 - 0.474474
VCA0150 polypeptide deformylasechromosome II CDS167987 507 + 0.487179
VCA0204 ATP-dependent RNA helicase RhlEchromosome II CDS220767 1356 - 0.488938
VCA0287 threonyl-tRNA synthetasechromosome II CDS306492 1929 + 0.456713
VCA0289 ribosomal protein L35chromosome II CDS309079 195 + 0.451282
VCA0290 ribosomal protein L20chromosome II CDS309315 354 + 0.460452
VCA0316 acetyltransferase, putativechromosome II CDS324552 537 + 0.430168
VCA0417 acetyltransferase, putativechromosome II CDS383932 537 + 0.430168
VCA0442 acetyltransferase, putativechromosome II CDS398032 477 + 0.396226
VCA0444 relE proteinchromosome II CDS399296 291 - 0.412371
VCA0468 hypothetical proteinchromosome II CDS414949 333 + 0.408408
VCA0474 acetyltransferase, putativechromosome II CDS418092 693 + 0.401154
VCA0478 conserved hypothetical proteinchromosome II CDS420238 291 + 0.429553
VCA0570 Sui1 family proteinchromosome II CDS508285 312 - 0.419872
VCA0627 rRNA methylase, putativechromosome II CDS562843 513 + 0.508772
VCA0768 ATP-dependent RNA helicase, DEAD box familychromosome II CDS711450 1269 - 0.499606
VCA0804 ATP-dependent RNA helicase DeaDchromosome II CDS746491 1992 - 0.506526
VCA0929 TrmA family RNA methyltransferase, putativechromosome II CDS882048 1128 - 0.514184
VCA0947 spermidine n1-acetyltransferasechromosome II CDS899206 522 + 0.417625
VCA0990 ATP-dependent RNA helicase, DEAD box familychromosome II CDS944006 1287 - 0.508936
VCA1016 hypothetical proteinchromosome II CDS965198 402 - 0.460199
VCA1070 hypothetical proteinchromosome II CDS1020875 222 - 0.477477