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2024-05-03 11:04:18

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Bradyrhizobium japonicum USDA 110, USDA110

Number of genes found: 237

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Bradyrhizobium japonicum USDA 110, USDA110
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
alaS alanyl-tRNA synthetasechromosome CDS6315732 2685 - 0.673371
amiC chromosome CDS8013463 1458 + 0.670096
bam indoleacetamide hydrolasechromosome CDS242527 1575 - 0.668571
bll0198 amidasechromosome CDS193060 1515 - 0.635644
bll0254 chromosome CDS251201 408 - 0.605392
bll0476 chromosome CDS515845 1254 - 0.673046
bll0648 chromosome CDS695174 486 - 0.676955
bll0710 translation initiation factor IF-3chromosome CDS759202 540 - 0.592593
bll0784 chromosome CDS842439 684 - 0.640351
bll0795 chromosome CDS853999 1398 - 0.653791
bll0957 chromosome CDS1046792 981 - 0.668705
bll1044 glutamyl-tRNA(Gln) amidotransferasechromosome CDS1154442 1809 - 0.680486
bll1127 chromosome CDS1240452 351 - 0.638177
bll1145 chromosome CDS1258005 1038 - 0.671484
bll1153 chromosome CDS1268040 771 - 0.654994
bll1287 chromosome CDS1397664 348 - 0.701149
bll1462 chromosome CDS1593581 360 - 0.591667
bll1930 chromosome CDS2087750 2511 - 0.617284
bll2093 chromosome CDS2264015 318 - 0.566038
bll2184 chromosome CDS2359095 444 - 0.581081
bll2484 tRNA/rRNA methyltransferasechromosome CDS2707248 459 - 0.671024
bll2495 chromosome CDS2719655 984 - 0.694106
bll2570 chromosome CDS2811669 990 - 0.716162
bll2648 RNA methyltransferasechromosome CDS2894110 1248 - 0.705929
bll2649 chromosome CDS2895350 738 - 0.673442
bll2914 chromosome CDS3206927 1239 - 0.663438
bll3115 chromosome CDS3438994 1596 - 0.680451
bll3281 chromosome CDS3638354 1368 - 0.700292
bll3378 chromosome CDS3742809 456 - 0.638158
bll3507 chromosome CDS3877265 372 - 0.647849
bll3646 chromosome CDS4030642 1131 - 0.62069
bll3874 chromosome CDS4295373 1497 - 0.678023
bll3976 chromosome CDS4415865 345 - 0.634783
bll4303 chromosome CDS4745206 1497 - 0.693387
bll4305 ribonuclease Echromosome CDS4747660 3099 - 0.680542
bll4678 chromosome CDS5181427 399 - 0.689223
bll4756 chromosome CDS5265952 678 - 0.620944
bll4757 arginyl-tRNA synthetasechromosome CDS5266493 1251 - 0.656275
bll4780 chromosome CDS5296449 453 - 0.615894
bll4861 30S ribosomal protein S2chromosome CDS5385374 996 - 0.65261
bll4888 chromosome CDS5419991 501 - 0.632735
bll4950 chromosome CDS5493533 1140 - 0.64386
bll5103 malonamidase E2chromosome CDS5660060 1245 - 0.693976
bll5130 chromosome CDS5687160 657 - 0.64688
bll5366 chromosome CDS5911825 1218 - 0.665025
bll5457 chromosome CDS5999792 402 - 0.644279
bll5806 chromosome CDS6369606 1386 - 0.652958
bll5980 glucose-1-phosphate cytidylyltransferasechromosome CDS6578364 771 - 0.612192
bll6075 chromosome CDS6692057 459 - 0.671024
bll6187 chromosome CDS6809438 570 - 0.636842
bll6282 chromosome CDS6912472 1005 - 0.648756
bll6504 tRNA delta(2)-isopentenylpyrophosphatechromosome CDS7162182 957 - 0.695925
bll6609 chromosome CDS7284041 393 - 0.661578
bll6696 chromosome CDS7365937 699 - 0.632332
bll6733 chromosome CDS7417595 1401 - 0.688794
bll7189 chromosome CDS7913165 348 - 0.632184
bll7414 chromosome CDS8152884 2049 - 0.667643
bll7439 GTP-binding proteinchromosome CDS8178520 1098 - 0.653916
bll7495 chromosome CDS8230448 2091 - 0.702535
bll7917 chromosome CDS8679802 1416 - 0.679379
blr0101 chromosome CDS97367 930 + 0.675269
blr0422 chromosome CDS454879 615 + 0.678049
blr0474 chromosome CDS513743 657 + 0.680365
blr0719 chromosome CDS768465 615 + 0.674797
blr0724 sigma-54 modulation proteinchromosome CDS773756 612 + 0.651961
blr0866 chromosome CDS932292 3576 + 0.597036
blr0961 chromosome CDS1050850 1107 + 0.6757
blr1015 chromosome CDS1120042 498 + 0.658635
blr1041 glutamyl-tRNA(Gln) amidotransferasechromosome CDS1151834 1377 + 0.679012
blr1191 chromosome CDS1305827 555 + 0.681081
blr1241 chromosome CDS1356349 384 + 0.653646
blr1563 chromosome CDS1703427 315 + 0.498413
blr1656 chromosome CDS1814084 807 + 0.555143
blr1935 chromosome CDS2099298 1068 + 0.65824
blr1970 chromosome CDS2127626 333 + 0.600601
blr2135 chromosome CDS2309012 1578 + 0.581115
blr2300 chromosome CDS2493249 2598 + 0.598537
blr2865 chromosome CDS3154701 747 + 0.646586
blr2960 glutamyl-tRNA(Gln) amidotransferase subunitchromosome CDS3263958 1350 + 0.682222
blr3229 chromosome CDS3567022 1428 + 0.689776
blr3288 chromosome CDS3645212 1380 + 0.686957
blr3406 chromosome CDS3774330 486 + 0.557613
blr3438 chromosome CDS3807393 441 + 0.648526
blr3734 chromosome CDS4143354 996 + 0.663655
blr3985 Sun proteinchromosome CDS4422745 1302 + 0.689708
blr4143 aspartyl-tRNA synthetasechromosome CDS4580678 1773 + 0.640722
blr4387 lysyl-tRNA synthetasechromosome CDS4850419 1065 + 0.665728
blr4467 chromosome CDS4944188 384 + 0.658854
blr4575 chromosome CDS5067100 1320 + 0.661364
blr4676 chromosome CDS5179774 588 + 0.668367
blr4727 glucose inhibited division proteinchromosome CDS5234614 1428 + 0.667367
blr5024 chromosome CDS5569853 558 + 0.646953
blr5113 chromosome CDS5671165 441 + 0.641723
blr5132 chromosome CDS5688835 582 + 0.690722
blr5236 chromosome CDS5786531 465 + 0.576344
blr5253 chromosome CDS5802789 1311 + 0.681922
blr5499 tRNA/rRNA metyltransferasechromosome CDS6060059 927 + 0.677454
blr5705 chromosome CDS6270432 768 + 0.690104
blr5969 chromosome CDS6566430 1434 + 0.693863
blr5988 chromosome CDS6586873 1224 + 0.648693
blr6153 chromosome CDS6769329 480 + 0.7
blr6526 chromosome CDS7182269 408 + 0.622549
blr6667 chromosome CDS7341545 384 + 0.674479
blr7336 chromosome CDS8073469 1008 + 0.684524
blr7351 chromosome CDS8090129 564 + 0.679078
blr7466 ribonucleasechromosome CDS8201728 711 + 0.661041
blr7474 hypothetical adenine-specific methylasechromosome CDS8208355 960 + 0.661458
blr7486 chromosome CDS8223206 417 + 0.673861
blr7496 nitrogen fixation proteinchromosome CDS8232646 459 + 0.642702
blr7761 chromosome CDS8510787 390 + 0.641026
blr7896 chromosome CDS8658031 1473 + 0.669382
bsl0158 chromosome CDS154108 231 - 0.670996
bsl0348 chromosome CDS366565 300 - 0.503333
bsl6528 chromosome CDS7183398 183 - 0.650273
bsl8076 chromosome CDS8856860 267 - 0.621723
bsr8096 ribosomal protein L34chromosome CDS8889769 135 + 0.703704
cysS cysteinyl-tRNA synthetasechromosome CDS4200568 1383 + 0.647867
deaD cold-shock dead-box protein Achromosome CDS6121063 1953 - 0.672299
def polypeptide deformylasechromosome CDS8901637 525 - 0.620952
def polypeptide deformylasechromosome CDS4443044 513 - 0.664717
efp elongation factor Pchromosome CDS4849690 531 - 0.625235
fmt methionyl-tRNA formyl transferasechromosome CDS8900558 936 - 0.685897
ftsJ cell division proteinchromosome CDS4407635 687 + 0.6623
fusA translation elongation factor Gchromosome CDS5938219 2073 - 0.623734
galF nucleotidyltransferase family proteinchromosome CDS806148 723 - 0.666667
gatA glutamyl-tRNA amidotransferase subunit Achromosome CDS6163563 1422 + 0.685654
gatA glutamyl-tRNA amidotransferase subunit Achromosome CDS5645187 1476 - 0.678862
gatB glutamyl-tRNA amidotransferase subunit Bchromosome CDS5643419 1479 - 0.634212
gatC glutamyl-tRNA-Gln-amidotransferase chain Cchromosome CDS5646890 288 - 0.645833
glnS glutaminyl-tRNA synthetasechromosome CDS5359135 1677 - 0.636852
gltX glutamyl-tRNA Synthetasechromosome CDS1488874 906 + 0.683223
gltX glutamyl-tRNA synthetasechromosome CDS5360966 1428 + 0.662465
glyQ glycyl-tRNA synthetase, alpha subunitchromosome CDS2769929 936 + 0.650641
glyS glycyl-tRNA synthetase beta chainchromosome CDS2770864 2100 + 0.651905
gshB glutathione synthetasechromosome CDS714107 945 - 0.660317
hemK protoporphyrinogen oxidasechromosome CDS216158 894 + 0.681208
hisS histidyl-tRNA synthetasechromosome CDS8193476 1521 - 0.656147
hisZ chromosome CDS8257318 1152 + 0.689236
hoxX chromosome CDS7622821 1701 - 0.673133
ileS isoleucyl-tRNA synthetasechromosome CDS8215632 3009 + 0.643403
infA translation initiation factor IF-1chromosome CDS1577070 291 - 0.656357
infB translation initiation factor IF-2chromosome CDS839659 2709 - 0.685493
ksgA rRNA-adenine N6,N6-dimethyltransferasechromosome CDS4532853 855 - 0.669006
leuS leucyl-tRNA synthetasechromosome CDS671621 2625 + 0.642667
ligT 2'-5' RNA ligasechromosome CDS496737 537 - 0.635009
lysS lysyl-tRNA synthetasechromosome CDS1246626 1644 + 0.641119
map methionin aminopeptidasechromosome CDS5400775 750 - 0.641333
map methionine aminopeptidasechromosome CDS8971633 819 + 0.652015
metG methionyl-tRNA synthetasechromosome CDS5002713 1977 - 0.645928
mgpS ATP-dependent helicasechromosome CDS154387 3372 - 0.686536
nifR nitrogen regulation proteinchromosome CDS4967026 1116 + 0.667563
papS poly(A) polymerasechromosome CDS2693546 1257 + 0.705648
pheS phenylalanyl-tRNA synthetase alpha chainchromosome CDS756139 1083 - 0.652816
pnpA polyribonucleotide nucleotidyltransferasechromosome CDS835059 2163 - 0.649561
prfA peptide chain release factor 1chromosome CDS215076 1086 + 0.665746
prfB peptide chain release factor 2chromosome CDS4755806 969 + 0.662539
prfC peptide chain release factor 3chromosome CDS4473912 1623 + 0.644486
prmA ribosomal protein L11 methyltransferasechromosome CDS7253701 888 + 0.684685
proS prolyl-tRNA synthetasechromosome CDS5407208 1320 - 0.644697
pth peptidyl-tRNA hydrolasechromosome CDS8179623 606 - 0.645214
queA S-adenosylmethionine tRNA ribosyltransferasechromosome CDS5193245 1101 - 0.682107
rbfA ribosome-binding factor Achromosome CDS839071 435 - 0.613793
rhlE dead-box ATP-dependent RNA helicasechromosome CDS1577384 1593 - 0.674827
rhlE ATP-dependent RNA helicasechromosome CDS4804544 1503 - 0.679308
rimJ ribosomal-protein-alanine N-acetyltransferasechromosome CDS1301274 588 + 0.67517
rimM 16S rRNA processing proteinchromosome CDS523326 522 + 0.67433
rnd ribonuclease Dchromosome CDS4571210 1149 - 0.666667
rnpA ribonuclease P protein componentchromosome CDS8889931 399 + 0.649123
rph Ribonuclease PHchromosome CDS719929 714 - 0.677871
rplA 50S ribosomal protein L1chromosome CDS5958973 693 - 0.65368
rplB 50S ribosomal protein L2chromosome CDS5934062 834 - 0.640288
rplC 50S ribosomal protein L3chromosome CDS5935829 717 - 0.656904
rplD 50S ribosomal protein L4chromosome CDS5935207 663 - 0.653092
rplE 50S ribosomal protein L5chromosome CDS5930392 558 - 0.629032
rplF 50S ribosomal protein L6chromosome CDS5929077 534 - 0.625468
rplI 50S ribosomal protein L9chromosome CDS4510458 606 - 0.660066
rplJ 50S ribosomal Protein L10chromosome CDS5956812 546 - 0.619048
rplK 50S ribosomal Protein L11chromosome CDS5959672 429 - 0.606061
rplL 50S ribosomal protein L7/L12chromosome CDS5956380 378 - 0.637566
rplM 50S ribosomal protein L13chromosome CDS5504828 465 - 0.636559
rplN 50S ribosomal protein L14chromosome CDS5931256 369 - 0.631436
rplO 50S ribosomal protein L15chromosome CDS5927285 486 - 0.674897
rplP 50S ribosomal protein L16chromosome CDS5932183 411 - 0.676399
rplQ 50S ribosomal protein L17chromosome CDS5921813 417 - 0.64988
rplR 50S ribosomal protein L18chromosome CDS5928703 363 - 0.658402
rplS 50S ribosomal protein L19chromosome CDS527044 381 + 0.627297
rplT 50S ribosomal protein L20chromosome CDS757818 360 - 0.655556
rplU 50S ribosomal protein L21chromosome CDS454016 390 + 0.646154
rplV 50S ribosomal protein L22chromosome CDS5933371 390 - 0.630769
rplW 50S ribosomal protein L23chromosome CDS5934908 303 - 0.594059
rplX 50S ribosomal protein L24chromosome CDS5930942 315 - 0.631746
rplY 50S ribosomal protein L25chromosome CDS8180291 717 - 0.670851
rpmA 50S ribosomal protein L27chromosome CDS454503 270 + 0.6
rpmB 50S ribosomal protein L28chromosome CDS159877 309 + 0.660194
rpmC 50S ribosomal protein L29chromosome CDS5931971 207 - 0.647343
rpmD 50S ribosomal protein L30chromosome CDS5927846 195 - 0.625641
rpmE 50S ribosomal protein L31chromosome CDS1642176 228 - 0.587719
rpmF 50S ribosomal protein L32chromosome CDS1035828 183 + 0.606557
rpmG 50S ribosomal protein L33chromosome CDS5674682 168 + 0.565476
rpmI 50S ribosomal protein L35chromosome CDS758258 201 - 0.587065
rpmJ 50S ribosomal protein L36chromosome CDS8283697 126 - 0.634921
rps21 30S ribosomal protein S21chromosome CDS389916 321 + 0.629283
rpsA 30S ribosomal protein S1chromosome CDS788093 1749 + 0.627787
rpsC 30S ribosomal protein S3chromosome CDS5932627 726 - 0.65427
rpsD 30S ribosomal protein S4chromosome CDS6271505 618 + 0.63754
rpsE 30s ribosomal protein S5chromosome CDS5928065 594 - 0.688552
rpsF 30S ribosomal protein S6chromosome CDS4512465 501 - 0.656687
rpsG 30S ribosomal protein S7chromosome CDS5940325 471 - 0.624204
rpsH 30S ribosomal protein S8chromosome CDS5929627 399 - 0.626566
rpsI 30S ribosomal protein S9chromosome CDS5504347 480 - 0.660417
rpsJ 30S ribosomal protein S10chromosome CDS5936598 309 - 0.605178
rpsK 30S ribosomal protein S11chromosome CDS5923565 390 - 0.674359
rpsL 30S ribosomal protein S12chromosome CDS5940811 372 - 0.63172
rpsM 30S ribosomal protein S13chromosome CDS5924078 369 - 0.626016
rpsN 30S ribosomal protein S14chromosome CDS5930040 306 - 0.630719
rpsO 30S ribosomal protein S15chromosome CDS837684 270 - 0.581481
rpsP 30S ribosomal protein S16chromosome CDS522984 333 + 0.672673
rpsQ 30S ribosomal protein S17chromosome CDS5931709 249 - 0.574297
rpsR 30S ribosomal protein S18chromosome CDS4512220 240 - 0.633333
rpsS 30S ribosomal protein S19chromosome CDS5933771 279 - 0.605735
rpsT 30S ribosomal protein S20chromosome CDS896406 267 - 0.662921
rpsU 30S ribosomal protein S21chromosome CDS7834171 297 + 0.659933
rrf ribosome recycling factorchromosome CDS5382907 567 - 0.643739
serS seryl-tRNA synthetasechromosome CDS5258186 1332 - 0.651652
sun SUN proteinchromosome CDS621965 1347 + 0.701559
tgt queuine tRNA-ribosyltransferasechromosome CDS5186220 1218 - 0.667488
thrS threonyl-tRNA synthetasechromosome CDS6094949 2172 + 0.635819
tms2 indole acetamide hydrolasechromosome CDS7060169 1416 - 0.617938
trmD tRNA (guanine-N1)-methyltransferasechromosome CDS526166 768 + 0.700521
trmU tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS7702895 1182 - 0.683587
trpS tryptophan-tRNA ligasechromosome CDS859551 1053 - 0.641975
truA tRNA pseudouridine synthase Ichromosome CDS8899700 759 - 0.666667
truB tRNA pseudouridine 55 synthasechromosome CDS837956 1038 - 0.668593
tsf translation elongation factor Tschromosome CDS5384317 924 - 0.646104
tuf elongation factor TUchromosome CDS5936988 1191 - 0.645676
tyrS tyrosyl-tRNA synthetasechromosome CDS4787647 1254 - 0.640351
valS valyl-tRNA synthetasechromosome CDS4954238 2877 + 0.656587