TitleGenColors Logo
spacer
Home spacerGenomes
spacerMethods
spacerDocumentation spacerContactspacer spacerLeibniz FLI
spacer
QuickSearch
2024-05-03 10:25:28

Gene list

Applied filters:

COG category: Translation, ribosomal structure and biogenesis
Organism: Vibrio parahaemolyticus RIMD 2210633, O3:K6

Number of genes found: 207

Free access
Sort by:

 

Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Vibrio parahaemolyticus RIMD 2210633, O3:K6
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
VP0004 ribonuclease P protein componentchromosome 1 CDS4238 357 - 0.442577
VP0005 ribosomal protein L34chromosome 1 CDS4608 135 - 0.488889
VP0021 glycyl-tRNA synthetase, beta chainchromosome 1 CDS19368 2067 - 0.481374
VP0022 glycyl-tRNA synthetase, alpha chainchromosome 1 CDS21448 918 - 0.474946
VP0024 NADH dehydrogenase subunit II-related proteinchromosome 1 CDS23608 261 + 0.448276
VP0126 conserved hypothetical proteinchromosome 1 CDS135486 435 + 0.485057
VP0131 conserved hypothetical proteinchromosome 1 CDS142054 387 - 0.470284
VP0158 tRNA methyltransferasechromosome 1 CDS170735 684 - 0.475146
VP0177 ribonuclease PHchromosome 1 CDS190844 717 + 0.51325
VP0185 ribosomal protein L28chromosome 1 CDS198223 237 + 0.451477
VP0186 ribosomal protein L33chromosome 1 CDS198473 171 + 0.403509
VP0238 conserved hypothetical proteinchromosome 1 CDS251930 1350 - 0.459259
VP0255 ribosomal protein L31chromosome 1 CDS266766 222 + 0.45045
VP0256 ribosomal protein S10chromosome 1 CDS267445 312 + 0.464744
VP0257 ribosomal protein L3chromosome 1 CDS267771 630 + 0.461905
VP0258 ribosomal protein L4chromosome 1 CDS268418 603 + 0.451078
VP0259 ribosomal protein L23chromosome 1 CDS269017 303 + 0.419142
VP0260 ribosomal protein L2chromosome 1 CDS269335 825 + 0.487273
VP0261 ribosomal protein S19chromosome 1 CDS270181 279 + 0.46595
VP0262 ribosomal protein L22chromosome 1 CDS270470 333 + 0.447447
VP0263 ribosomal protein S3chromosome 1 CDS270821 699 + 0.483548
VP0264 ribosomal protein L16chromosome 1 CDS271531 411 + 0.467153
VP0265 ribosomal protein L29chromosome 1 CDS271941 192 + 0.453125
VP0266 ribosomal protein S17chromosome 1 CDS272132 255 + 0.427451
VP0267 ribosomal protein L14chromosome 1 CDS272549 372 + 0.478495
VP0268 ribosomal protein L24chromosome 1 CDS272934 318 + 0.421384
VP0269 ribosomal protein L5chromosome 1 CDS273275 540 + 0.464815
VP0270 ribosomal protein S14chromosome 1 CDS273832 306 + 0.46732
VP0271 ribosomal protein S8chromosome 1 CDS274167 393 + 0.437659
VP0272 ribosomal protein L6chromosome 1 CDS274572 534 + 0.453184
VP0273 ribosomal protein L18chromosome 1 CDS275115 354 + 0.502825
VP0274 ribosomal protein S5chromosome 1 CDS275483 504 + 0.468254
VP0275 ribosomal protein L30chromosome 1 CDS275994 177 + 0.412429
VP0276 ribosomal protein L15chromosome 1 CDS276176 435 + 0.462069
VP0278 ribosomal protein L36chromosome 1 CDS278004 114 + 0.447368
VP0279 ribosomal protein S13chromosome 1 CDS278267 357 + 0.478992
VP0280 ribosomal protein S11chromosome 1 CDS278642 390 + 0.494872
VP0281 ribosomal protein S4chromosome 1 CDS279059 621 + 0.455717
VP0283 ribosomal protein L17chromosome 1 CDS280723 381 + 0.467192
VP0288 ATP-dependent RNA helicase DbpAchromosome 1 CDS283987 1380 + 0.480435
VP0328 ribosomal protein L21chromosome 1 CDS323305 312 + 0.435897
VP0329 ribosomal protein L27chromosome 1 CDS323637 258 + 0.449612
VP0336 dimethyladenosine transferasechromosome 1 CDS328585 810 - 0.474074
VP0360 hypothetical proteinchromosome 1 CDS358105 441 + 0.433107
VP0407 ribosomal protein S21chromosome 1 CDS408328 216 - 0.49537
VP0414 tRNA nucleotidyltransferasechromosome 1 CDS413355 1221 - 0.471744
VP0438 ribosomal protein L13chromosome 1 CDS442155 429 + 0.445221
VP0439 ribosomal protein S9chromosome 1 CDS442599 393 + 0.478372
VP0505 ATP-dependent RNA helicase SrmBchromosome 1 CDS520166 1224 - 0.490196
VP0512 peptide chain release factor 2chromosome 1 CDS528678 783 + 0.481481
VP0513 lysyl-tRNA synthetase, heat induciblechromosome 1 CDS529495 1518 + 0.464427
VP0531 ribosomal protein S20chromosome 1 CDS546383 261 - 0.455939
VP0534 isoleucyl-tRNA synthetasechromosome 1 CDS549571 2829 + 0.474726
VP0556 putative sigma-54 modulation proteinchromosome 1 CDS573552 327 - 0.415902
VP0559 ribosomal large subunit pseudouridine synthase Dchromosome 1 CDS576690 978 + 0.486708
VP0587 S-adenosylmethionine:tRNAribosyltransferase-isom erasechromosome 1 CDS614087 1053 + 0.45679
VP0588 queuine tRNA-ribosyltransferasechromosome 1 CDS615288 1134 + 0.472663
VP0594 RNA methyltransferase, TrmH familychromosome 1 CDS621014 720 + 0.45
VP0609 histidyl-tRNA synthetasechromosome 1 CDS633305 1269 + 0.477541
VP0647 small protein Achromosome 1 CDS676321 360 - 0.422222
VP0663 YfhC proteinchromosome 1 CDS692635 486 + 0.485597
VP0727 leucyl-tRNA synthetasechromosome 1 CDS761473 2574 - 0.470085
VP0733 conserved hypothetical proteinchromosome 1 CDS768970 1425 - 0.466667
VP0737 GTP-binding proteinchromosome 1 CDS774802 1152 - 0.457465
VP0738 peptidyl-tRNA hydrolasechromosome 1 CDS775904 591 - 0.475465
VP0743 peptide chain release factor 1chromosome 1 CDS780547 1089 + 0.488522
VP0744 HemK proteinchromosome 1 CDS781639 858 + 0.490676
VP0750 pseudouridine synthase family 1 proteinchromosome 1 CDS787187 1116 - 0.473118
VP0762 glutamyl-tRNA synthetasechromosome 1 CDS800876 1425 + 0.469474
VP0832 glutaminyl-tRNA synthetasechromosome 1 CDS863620 1671 + 0.449431
VP0861 arginyl-tRNA synthetasechromosome 1 CDS894392 1734 - 0.476932
VP0871 ribonuclease Dchromosome 1 CDS904382 1167 + 0.450728
VP0903 RhlEchromosome 1 CDS935077 1236 + 0.487864
VP0954 RNA methyltransferase, TrmH familychromosome 1 CDS995935 735 + 0.465306
VP0973 putative ribosomal-protein-serine acetyltransferasechromosome 1 CDS1013311 549 - 0.437158
VP1010 pseudouridine synthase family 1 proteinchromosome 1 CDS1057244 717 - 0.458856
VP1016 initiation factor IF-1chromosome 1 CDS1065426 219 - 0.465753
VP1040 hypothetical proteinchromosome 1 CDS1090875 969 - 0.498452
VP1047 aspartyl-tRNA synthetasechromosome 1 CDS1097436 1779 + 0.477797
VP1096 putative tryptophanyl-tRNA synthetasechromosome 1 CDS1152769 1023 + 0.458456
VP1099 tRNA-(MS[2]IO[6]A)-hydroxylasechromosome 1 CDS1156396 771 - 0.439689
VP1102 hypothetical proteinchromosome 1 CDS1159401 1197 + 0.446115
VP1108 seryl-tRNA synthetasechromosome 1 CDS1167853 1308 + 0.465596
VP1130 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome 1 CDS1186587 1089 - 0.459137
VP1150 cysteinyl-tRNA synthetasechromosome 1 CDS1207408 1383 + 0.467101
VP1186 pseudouridine synthase Rlu family proteinchromosome 1 CDS1247114 693 + 0.47619
VP1210 ribosomal protein L25chromosome 1 CDS1270604 279 - 0.462366
VP1215 ribosomal small subunit pseudouridine synthase Achromosome 1 CDS1275615 702 + 0.460114
VP1264 hypothetical proteinchromosome 1 CDS1338890 393 - 0.430025
VP1280 threonyl-tRNA synthetasechromosome 1 CDS1357203 1929 + 0.440643
VP1281 large subunit ribosomal protein L35chromosome 1 CDS1359806 195 + 0.430769
VP1282 large subunit ribosomal protein L20chromosome 1 CDS1360041 354 + 0.454802
VP1290 phenylalanyl-tRNA synthetase, alpha chainchromosome 1 CDS1369542 984 + 0.469512
VP1593 ribosome modulation factorchromosome 1 CDS1684182 174 - 0.454023
VP1797 hypothetical proteinchromosome 1 CDS1907308 372 - 0.413978
VP1805 hypothetical proteinchromosome 1 CDS1913371 789 - 0.375158
VP1832 conserved hypothetical proteinchromosome 1 CDS1929820 477 - 0.404612
VP1848 hypothetical proteinchromosome 1 CDS1938305 675 - 0.376296
VP1868 ribosomal-protein-alanine acetyltransferasechromosome 1 CDS1950370 585 - 0.442735
VP1893 asparaginyl-tRNA synthetasechromosome 1 CDS1978207 1401 + 0.488223
VP1897 hypothetical proteinchromosome 1 CDS1981590 234 + 0.474359
VP1948 elongation factor P family proteinchromosome 1 CDS2041926 567 + 0.43739
VP1951 pseudouridine synthase family 1 proteinchromosome 1 CDS2042966 939 - 0.476038
VP1953 putative translation factorchromosome 1 CDS2045055 621 - 0.462158
VP2000 putative ribosomal-protein-alanine N-acetyltransferasechromosome 1 CDS2095900 561 - 0.449198
VP2030 ribosomal protein S1chromosome 1 CDS2127169 1671 - 0.447636
VP2058 ribosomal protein L32chromosome 1 CDS2158265 171 - 0.473684
VP2061 23S rRNA ribosomal pseudouridine synthasechromosome 1 CDS2159845 948 - 0.441983
VP2062 ribonuclease Echromosome 1 CDS2161432 3072 + 0.474935
VP2075 putative regulator proteinchromosome 1 CDS2179754 969 + 0.480908
VP2132 hypothetical proteinchromosome 1 CDS2241337 384 + 0.372396
VP2153 L-asparaginase Ichromosome 1 CDS2265954 1014 + 0.464497
VP2174 putative regulatory proteinchromosome 1 CDS2284522 381 - 0.417323
VP2190 tRNA pseudouridine synthase Achromosome 1 CDS2299597 795 - 0.455346
VP2203 putative adenine-specific methylasechromosome 1 CDS2314736 933 - 0.472669
VP2315 ribosome recycling factorchromosome 1 CDS2427676 558 - 0.433692
VP2317 elongation factor Tschromosome 1 CDS2429210 846 - 0.456265
VP2318 ribosomal protein S2chromosome 1 CDS2430187 729 - 0.44856
VP2319 methionine aminopeptidasechromosome 1 CDS2431313 879 + 0.442548
VP2321 conserved hypothetical proteinchromosome 1 CDS2435072 384 + 0.401042
VP2322 pseudouridine synthase Rlu family proteinchromosome 1 CDS2435538 741 - 0.475034
VP2326 acetyltransferase-related proteinchromosome 1 CDS2438015 507 - 0.428008
VP2331 ribosomal protein, L31P familychromosome 1 CDS2442470 261 - 0.444444
VP2333 prolyl-tRNA synthetasechromosome 1 CDS2443660 1716 + 0.479604
VP2353 putative methyltransferasechromosome 1 CDS2464459 1158 + 0.419689
VP2370 hypothetical proteinchromosome 1 CDS2478859 456 - 0.464912
VP2428 elongation factor EF-Gchromosome 1 CDS2545955 2091 - 0.452415
VP2440 peptide chain release factor RF-3chromosome 1 CDS2561397 1590 - 0.466038
VP2452 polyribonucleotide nucleotidyltransferasechromosome 1 CDS2573146 2136 - 0.465356
VP2453 ribosomal protein S15chromosome 1 CDS2575634 270 - 0.462963
VP2454 tRNA pseudouridine 55 synthasechromosome 1 CDS2576054 945 - 0.466667
VP2455 ribosome-binding factor Achromosome 1 CDS2576998 396 - 0.459596
VP2456 initiation factor IF-2chromosome 1 CDS2577508 2718 - 0.457689
VP2464 cell division protein FtsJchromosome 1 CDS2587579 630 - 0.422222
VP2465 putative RNA-binding protein containing KH domainchromosome 1 CDS2588347 297 + 0.417508
VP2470 tyrosyl-tRNA synthetasechromosome 1 CDS2593611 1188 - 0.462121
VP2477 putative 16S rRNA m2G 1207 methyltransferasechromosome 1 CDS2604002 1026 + 0.446394
VP2502 glutamyl-tRNA synthetase-related proteinchromosome 1 CDS2642066 885 + 0.459887
VP2504 polyA polymerasechromosome 1 CDS2643038 1362 + 0.491924
VP2530 ribosomal protein L19chromosome 1 CDS2669585 354 - 0.457627
VP2531 tRNA (guanine-N1)-methyltransferasechromosome 1 CDS2669980 744 - 0.454301
VP2532 16S rRNA processing protein RimMchromosome 1 CDS2670751 549 - 0.420765
VP2533 ribosomal protein S16chromosome 1 CDS2671328 249 - 0.493976
VP2548 alanyl-tRNA synthetasechromosome 1 CDS2689993 2583 - 0.477352
VP2566 putative TrmA family RNA methyltransferasechromosome 1 CDS2710979 1320 - 0.462879
VP2611 glutathione synthetasechromosome 1 CDS2754992 951 + 0.472135
VP2646 valyl-tRNA synthetasechromosome 1 CDS2798087 2859 + 0.478489
VP2656 conserved hypothetical proteinchromosome 1 CDS2808762 390 + 0.44359
VP2671 putative sigma-54 modulation proteinchromosome 1 CDS2820427 288 + 0.381944
VP2679 ribosomal large subunit pseudouridine synthase Achromosome 1 CDS2827022 753 - 0.484728
VP2687 cytoplasmic axial filament proteinchromosome 1 CDS2840564 1470 - 0.470748
VP2727 NifR3/Smm1 family proteinchromosome 1 CDS2893697 981 - 0.48318
VP2737 ribosomal protein L9chromosome 1 CDS2903296 453 - 0.461369
VP2738 ribosomal protein S18chromosome 1 CDS2903782 228 - 0.45614
VP2740 ribosomal protein S6chromosome 1 CDS2904337 390 - 0.466667
VP2770 elongation factor TUchromosome 1 CDS2938514 1185 - 0.473418
VP2771 elongation factor Gchromosome 1 CDS2939852 2100 - 0.466667
VP2772 ribosomal protein S7chromosome 1 CDS2942090 471 - 0.454352
VP2773 ribosomal protein S12chromosome 1 CDS2942662 375 - 0.469333
VP2804 tryptophanyl-tRNA synthetasechromosome 1 CDS2967521 1017 - 0.476893
VP2806 RNA methyltransferase, TrmH familychromosome 1 CDS2969442 744 - 0.489247
VP2818 tRNA delta(2)-isopentenylpyrophosphate transferasechromosome 1 CDS2981363 933 - 0.456592
VP2838 lysyl-tRNA synthetase-related proteinchromosome 1 CDS3006533 972 - 0.490741
VP2845 elongation factor Pchromosome 1 CDS3013031 567 - 0.426808
VP2861 rRNA methylase, SpoU familychromosome 1 CDS3027846 480 + 0.483333
VP2883 ribosomal protein L11 methyltransferasechromosome 1 CDS3054385 888 + 0.483108
VP2884 NifR3/Smm1 family proteinchromosome 1 CDS3055385 996 + 0.4749
VP2923 ribosomal protein L7/L12chromosome 1 CDS3117174 369 - 0.460705
VP2924 ribosomal protein L10chromosome 1 CDS3117603 489 - 0.478528
VP2925 ribosomal protein L1chromosome 1 CDS3118384 702 - 0.457265
VP2926 ribosomal protein L11chromosome 1 CDS3119090 429 - 0.470862
VP2930 elongation factor TUchromosome 1 CDS3120892 1185 - 0.468354
VP2939 tRNA (uracil-5-)-methyltransferasechromosome 1 CDS3143338 1110 + 0.461261
VP3002 ATP-dependent RNA helicase RhlBchromosome 1 CDS3204822 1314 + 0.493912
VP3035 Sua5/YciO/YrdC family proteinchromosome 1 CDS3242972 558 - 0.478495
VP3042 polypeptide deformylasechromosome 1 CDS3248875 519 + 0.475915
VP3043 methionyl-tRNA formyltransferasechromosome 1 CDS3249427 948 + 0.513713
VP3044 Sun proteinchromosome 1 CDS3250455 1284 + 0.502336
VPA0001 conserved hypothetical proteinchromosome 2 CDS1150 1971 + 0.465753
VPA0062 putative ribosomal large chain pseudouridine synthase Achromosome 2 CDS53424 1680 - 0.492262
VPA0094 hypothetical proteinchromosome 2 CDS86518 312 - 0.477564
VPA0126 putative acetyltransferasechromosome 2 CDS116948 516 - 0.478682
VPA0173 ribosomal protein S6 modification proteinchromosome 2 CDS169104 906 - 0.460265
VPA0294 hypothetical proteinchromosome 2 CDS292928 1443 - 0.480942
VPA0328 putative translation elongation factor Gchromosome 2 CDS321293 2025 - 0.478519
VPA0368 tyrosyl-tRNA synthetasechromosome 2 CDS363834 1260 - 0.483333
VPA0374 periplasmic L-asparaginase IIchromosome 2 CDS370709 1065 - 0.480751
VPA0377 hypothetical proteinchromosome 2 CDS374422 393 + 0.473282
VPA0390 ATP-dependent RNA helicase RhlEchromosome 2 CDS386830 1569 - 0.490121
VPA0474 spermidine n1-acetyltransferasechromosome 2 CDS474254 531 - 0.423729
VPA0583 putative ATP-dependent RNA helicasechromosome 2 CDS581065 1251 + 0.464428
VPA0590 putative ATP-dependent RNA helicasechromosome 2 CDS587620 1293 + 0.469451
VPA0605 hypothetical proteinchromosome 2 CDS607199 399 + 0.438596
VPA0608 ATP-dependent RNA helicase DeaDchromosome 2 CDS610863 1932 + 0.489648
VPA0760 putative ribosomal-protein-serine N-acetyltransferasechromosome 2 CDS790025 561 + 0.475936
VPA0784 polypeptide deformylasechromosome 2 CDS813501 507 + 0.445759
VPA0845 ATP-dependent RNA helicase, DEAD box familychromosome 2 CDS881054 1266 + 0.457346
VPA0888 Sui1 family proteinchromosome 2 CDS932955 312 + 0.455128
VPA0924 hypothetical proteinchromosome 2 CDS957566 369 - 0.417344
VPA0977 putative acetyltransferasechromosome 2 CDS1022809 510 - 0.431373
VPA1188 conserved hypothetical proteinchromosome 2 CDS1257778 414 + 0.425121
VPA1303 hypothetical proteinchromosome 2 CDS1381959 591 - 0.414552
VPA1468 ATP-dependent RNA helicase, DEAD box familychromosome 2 CDS1567503 1347 - 0.460282
VPA1547 hypothetical protein (LafA 5' region)chromosome 2 CDS1648906 798 + 0.43609
VPA1699 ATP-dependent RNA helicase, DEAD box familychromosome 2 CDS1817201 1239 - 0.479419
VPA1720 putative acetyltransferasechromosome 2 CDS1838110 534 + 0.485019
VPA1723 putative ribosomal protein N-acetyltransferasechromosome 2 CDS1839536 570 + 0.478947